rna4825, rna4825 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4825
Unique Name	rna4825
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1357
Alignment location	CM002464.1:452190..453099 -

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin-like protein 5
Orig transcript id	gnl\|cribi\|Naga_100054g35.5566.mrna
Orig protein id	gnl\|cribi\|Naga_100054g35.5566
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:452190..453099 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100054g35	gene4660	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4825	rna4825-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25874.1	cds4813	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:452190..453099-
coding sequence from alignment at CM002464.1:452190..453099-

mRNA sequence

>rna4825 ID=rna4825|Name=rna4825|organism=Nannochloropsis gaditana|type=mRNA|length=1357bp
GTCGAGATGGAGCGCTTTCAGGGCCGCCATAGTGACGCGAAGGCAATCAC
TTTGCACTCATGCGAGCTGCATGTCCCTGTTGTCAATATGATCGTCTTGA
CGTACGGTTTATTTGTGTGTCCGACGTGTCTGACGCGTGCACCTTTTTTG
AGAGGAAGCCGAGGAAGCAGTCAAAATTGTCGGTCTTCCTGTGTCCTTTT
CCGTAGTACCTTTTCCTCAAACTTTTGTCTCAATTTACATGGTATAGGTG
AAGCAATATGGAAACCGAGGTTTTTCAGGAAGTGGCCTCCCAGCAAATAT
TACAGCTTGCTCAAGAGGAAGAAGCGAAATTAGACAGGGAGATCCAGAAG
CTCGAGACTCTCGACGAGGATGACTTCGACAAACTTCGGCAGCGTCGTTT
GGAGAAGCTAAAAAAAGCGGAGCAGCAGAAGCACATCTACAAACAACTGG
GTCACGGGGAGTATGCTGAGCTGGCAAGTCAGCAAGAGTTTTTCGATGCA
GCGAAGCACAGTCCCCGCGTAGTCTGTCATTTCTACCGACCCACGGCCAA
GTACTGCCAAGTGGTAGACTTTCACATGGCACGACTTGCGGCCCGACACA
TCGAAACGCGATTCTGCAAAATAAATGCCGAGAAGAGCCCATATCTGGTC
GAGAAGCTGAATGTGTACATGATGCCCACGATTGTGTGCATCAAGGACCA
AAAAACGACGCACCACATCAAGGGATTGGACGAGCTGGGGGGCACGGACG
AGTTCTCCTCAGATATGTTCGCCTACGTACTCAGCTCCCACAACGTCTTG
AACTATGATGGTGGCCGGCCTGACAGCCCCACCCAGGCAGCGAAGAAGAA
AGGAGTAAATTCCATCCGCATGGCCATGACAGGCCCCGGGGGCCTCGCGC
CTGGTCGACGGGGAGGAACTAGCTCCATCCGGGATGGTCTGACCGAGACG
CAGTACGATAGTGACGGGAGTGCAGAGGACGACGTTTTTTAAGTAGCGTT
TTTCTCTTGTATGTGCATGTACGAGGATGTTCTGGGAAGCGTCCAGGTTT
AGAGGGAGGGGAAGATGGCGATGTGGCGCGGCGCATAGGAAATTGCAGTC
TGTAAGAAACATCAAATTAACCAAGGGAAAAAAAGCACTTGCACTTTTAA
GATGCGAAGGGTTTCTTCTTCACCATATATTTTATGTGCGTCGTAGGCTC
TAGGAATAGTAAAGTTCTAGAGACATGCCCTATATGGGATGTAGCGGGAA
AGGAGAAACGGAAGACAATGAGTGCTCTGTCGATCAGAAAATTCCAAGTC
CGTCAGCTTCTAAGTGTTCAACCACACTTTTCACAGATAATCCTTTTCAT
AGCCTCG

protein sequence of rna4825

>rna4825-protein ID=rna4825-protein|Name=rna4825|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTV
YKDHITLADYEISEGMSLELYYS

mRNA from alignment at CM002464.1:452190..453099-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4825 ID=rna4825|Name=rna4825|organism=Nannochloropsis gaditana|type=mRNA|length=910bp|location=Sequence derived from alignment at CM002464.1:452190..453099- (Nannochloropsis gaditana)
CATCTGAAGCGGCGCCTATAAGTAGGGATTCTTCTATACTATTTCTTTGG
AAGCCGAAGCACGCATTGGATGCTTGTCACCCTCTGTGCGCGTGCTCGAA
TTTGCCATCGATCCTCAATATGACCTCCCCACTCCAACCACACAGGTGGT
TACGATGATCGAGGTCATTCTGAATGATCGTCTGGGCAAAAAAATCAGGG
TCAAATGTAATGAGGACGATACAATTGGAGATCTTAAAAAGCTTGTTGCA
GCGCAAACAGGTACGAGCTGCTCGGATGCGTAGAGGGGCAAGAAAAGTCG
CCTGCTGTGCCGGAAGAATTGCAGGGAAAGAAGTGCAAAAGGCTCCGTCG
TTAATCTTGTCGTGTATCGTTCTCGACGCCATTCAAGAGTACGGTTGAGA
TTTTGTTCTGTACGGGCTTGTTGTTGGTGACGGCACGCAGCAAGTGAAGA
TTTTGCGTACTTGTACCCATTTGTCCGCTCGCTTACAAGCAAAAGCACTC
ACACTTACTCTTGTTTCTGCGTGCAATCTCTCACATTCGTCCACTTCTAG
GAACACGACCGGAAAAGATCCGTATCCAAAAATGGTACACGGTGTACAAA
GACCACATCACGTTGGCAGATTATGAAATAAGCGAGGCACGTTCTCTCTC
TCGATTTCTCTTTCCGTGTTTCCCAGAAATTTGAGCCCCTAAAACGAGGC
TATGAAAAGGATTATCTGTGAAAAGTGTGGTTGAACACTTAGAAGCTGAC
GGACTTGGAATTTTCTGATCGACAGAGCACTCATTGTCTTCCGTTTCTCC
TTTCCCGCTACATCCCATATAGGGCATGTCTCTAGAACTTTACTATTCCT
AGAGCCTACGACGCACATAAAATATATGGTGAAGAAGAAACCCTTCGCAT
CTTAAAAGTG

Coding sequence (CDS) from alignment at CM002464.1:452190..453099-

>rna4825 ID=rna4825|Name=rna4825|organism=Nannochloropsis gaditana|type=CDS|length=666bp|location=Sequence derived from alignment at CM002464.1:452190..453099- (Nannochloropsis gaditana)
GGCATGTCTCTAGAACTTTACTATTCCTAGGAACACGACCGGAAAAGATC
CGTATCCAAAAATGGTACACGGTGTACAAAGACCACATCACGTTGGCAGA
TTATGAAATAAGCGAGATGATCGAGGTCATTCTGAATGATCGTCTGGGCA
AAAAAATCAGGGTCAAATGTAATGAGGACGATACAATTGGAGATCTTAAA
AAGCTTGTTGCAGCGCAAACAGGGCATGTCTCTAGAACTTTACTATTCCT
AGGAACACGACCGGAAAAGATCCGTATCCAAAAATGGTACACGGTGTACA
AAGACCACATCACGTTGGCAGATTATGAAATAAGCGAGATGATCGAGGTC
ATTCTGAATGATCGTCTGGGCAAAAAAATCAGGGTCAAATGTAATGAGGA
CGATACAATTGGAGATCTTAAAAAGCTTGTTGCAGCGCAAACAGGGCATG
TCTCTAGAACTTTACTATTCCTAGGAACACGACCGGAAAAGATCCGTATC
CAAAAATGGTACACGGTGTACAAAGACCACATCACGTTGGCAGATTATGA
AATAAGCGAGATGATCGAGGTCATTCTGAATGATCGTCTGGGCAAAAAAA
TCAGGGTCAAATGTAATGAGGACGATACAATTGGAGATCTTAAAAAGCTT
GTTGCAGCGCAAACAG

Synonyms

Publications