EWM25874.1, cds4813 (CDS) Nannochloropsis gaditana

Overview
NameEWM25874.1
Unique Namecds4813
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:452840..452945 -
Alignment locationCM002464.1:452464..452549 -
Alignment locationCM002464.1:452248..452277 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25874.1
Productubiquitin-like protein 5
Orig transcript idgnl|cribi|Naga_100054g35.5566.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:452840..452945 -
CM002464.1supercontigCM002464.1:452464..452549 -
CM002464.1supercontigCM002464.1:452248..452277 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006464cellular protein modification process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR029071Ubiquitin-rel_dom
IPR000626Ubiquitin-like
Homology
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|585107742|gb|EWM25874.1| (ubiquitin-like protein 5 [Nannochloropsis gaditana])

HSP 1 Score: 150.214 bits (378), Expect = 4.774e-46
Identity = 73/73 (100.00%), Postives = 73/73 (100.00%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS
Sbjct:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|760448569|ref|XP_011401353.1| (Ubiquitin-like protein 5 [Auxenochlorella protothecoides] >gi|675355899|gb|KFM28339.1| Ubiquitin-like protein 5 [Auxenochlorella protothecoides])

HSP 1 Score: 141.739 bits (356), Expect = 9.037e-43
Identity = 65/73 (89.04%), Postives = 72/73 (98.63%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEK+RIQKWYTVYKDHITLADYE+ +GM+LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKLRIQKWYTVYKDHITLADYEVKDGMNLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|159478294|ref|XP_001697239.1| (hypothetical protein CHLREDRAFT_150548 [Chlamydomonas reinhardtii] >gi|158274713|gb|EDP00494.1| predicted protein [Chlamydomonas reinhardtii] >gi|1004143665|gb|KXZ51647.1| hypothetical protein GPECTOR_11g101 [Gonium pectorale])

HSP 1 Score: 141.739 bits (356), Expect = 9.867e-43
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|926788691|ref|XP_013902819.1| (Ubiquitin-like protein 5 [Monoraphidium neglectum] >gi|761973573|gb|KIZ03800.1| Ubiquitin-like protein 5 [Monoraphidium neglectum])

HSP 1 Score: 140.969 bits (354), Expect = 1.907e-42
Identity = 66/73 (90.41%), Postives = 71/73 (97.26%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEVILNDRLGKK+R+KCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITL+DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRIKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLSDYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|168063618|ref|XP_001783767.1| (predicted protein [Physcomitrella patens] >gi|162664710|gb|EDQ51419.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 140.584 bits (353), Expect = 2.863e-42
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL+DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLSDYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|545362946|ref|XP_005646670.1| (ubiquitin-like protein [Coccomyxa subellipsoidea C-169] >gi|384248643|gb|EIE22126.1| ubiquitin-like protein [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 140.584 bits (353), Expect = 3.161e-42
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWY +YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYNIYKDHITLADYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|971508701|dbj|GAQ89500.1| (Ubiquitin-like protein [Klebsormidium nitens])

HSP 1 Score: 140.584 bits (353), Expect = 3.231e-42
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|302829811|ref|XP_002946472.1| (hypothetical protein VOLCADRAFT_56004 [Volvox carteri f. nagariensis] >gi|300268218|gb|EFJ52399.1| hypothetical protein VOLCADRAFT_56004 [Volvox carteri f. nagariensis])

HSP 1 Score: 140.198 bits (352), Expect = 3.451e-42
Identity = 65/73 (89.04%), Postives = 71/73 (97.26%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRP+KIRIQKWYT+YKDHITLADYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPDKIRIQKWYTIYKDHITLADYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|255578145|ref|XP_002529942.1| (PREDICTED: ubiquitin-like protein 5 [Ricinus communis] >gi|223530572|gb|EEF32450.1| conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 140.198 bits (352), Expect = 4.206e-42
Identity = 66/73 (90.41%), Postives = 70/73 (95.89%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEVILNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVILNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLQDYEIHDGMGLELYYN 73          
BLAST of EWM25874.1 vs. NCBI_GenBank
Match: gi|357160979|ref|XP_003578938.1| (PREDICTED: ubiquitin-like protein 5 [Brachypodium distachyon] >gi|1149788458|ref|XP_020156054.1| ubiquitin-like protein 5 [Aegilops tauschii subsp. tauschii] >gi|475612009|gb|EMT28275.1| hypothetical protein F775_30675 [Aegilops tauschii] >gi|732811693|gb|AIZ94609.1| HUB1 [Lolium perenne] >gi|741985234|gb|AJA91631.1| ubiquitin-like protein 5 [Triticum aestivum] >gi|944056696|gb|KQJ92334.1| hypothetical protein BRADI_4g42980 [Brachypodium distachyon])

HSP 1 Score: 140.198 bits (352), Expect = 4.694e-42
Identity = 65/73 (89.04%), Postives = 70/73 (95.89%), Query Frame = 0
Query:    1 MIEVILNDRLGKKIRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTVYKDHITLADYEISEGMSLELYYS 73
            MIEV+LNDRLGKK+RVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYT+YKDHITL DYEI +GM LELYY+
Sbjct:    1 MIEVVLNDRLGKKVRVKCNEDDTIGDLKKLVAAQTGTRPEKIRIQKWYTIYKDHITLGDYEIHDGMGLELYYN 73          
The following BLAST results are available for this feature:
BLAST of EWM25874.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107742|gb|EWM25874.1|4.774e-46100.00ubiquitin-like protein 5 [Nannochloropsis gaditana... [more]
gi|760448569|ref|XP_011401353.1|9.037e-4389.04Ubiquitin-like protein 5 [Auxenochlorella protothe... [more]
gi|159478294|ref|XP_001697239.1|9.867e-4390.41hypothetical protein CHLREDRAFT_150548 [Chlamydomo... [more]
gi|926788691|ref|XP_013902819.1|1.907e-4290.41Ubiquitin-like protein 5 [Monoraphidium neglectum]... [more]
gi|168063618|ref|XP_001783767.1|2.863e-4289.04predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|545362946|ref|XP_005646670.1|3.161e-4290.41ubiquitin-like protein [Coccomyxa subellipsoidea C... [more]
gi|971508701|dbj|GAQ89500.1|3.231e-4290.41Ubiquitin-like protein [Klebsormidium nitens][more]
gi|302829811|ref|XP_002946472.1|3.451e-4289.04hypothetical protein VOLCADRAFT_56004 [Volvox cart... [more]
gi|255578145|ref|XP_002529942.1|4.206e-4290.41PREDICTED: ubiquitin-like protein 5 [Ricinus commu... [more]
gi|357160979|ref|XP_003578938.1|4.694e-4289.04PREDICTED: ubiquitin-like protein 5 [Brachypodium ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4825rna4825Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications