rna4822, rna4822 (mRNA) Nannochloropsis gaditana

Overview
Namerna4822
Unique Namerna4822
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1823
Alignment locationCM002464.1:448708..449442 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g32.5567.mrna
Orig protein idgnl|cribi|Naga_100054g32.5567
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:448708..449442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g32gene4657Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4822rna4822-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25875.1cds4810Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4822 ID=rna4822|Name=rna4822|organism=Nannochloropsis gaditana|type=mRNA|length=1823bp
TACCAGCAGGTTTTATCTTTCAGCGCCTTGCTTGCCCTTGATTGCTCACG
CGGGAGTAGCCGCATTGGGGGGGAATGCGACAATATCTCGATACTTTCTC
ACTACTTCACCTTCTCATTTGTGAGCTCTTCTTGGCCCGAGGACATACGG
AGTCAACAAGCCTTAACTTCCTTTCGATCGGAGATCATGGCCTCCGTAAT
ATGGAGACAGAAGCCGTGGCGAGGCGAATGGCTCTTGAGAAAGAAGCAAT
AAACGCCTCGTTCGTGTTACTGGGTGGTGGTAAGTAGGCCCCCGCTTTTT
AGTACGTGACCAATTTTATCCGGATGGCGTGTCCAGTGTTGAAGACCCGC
TCTGGAACACAACATTCAGGGATCTTTTTACCCCCGAGGCATTTCCTGTT
CCTTTTTACCCCATCCGCGGCAATCACGACTACCACTCTAGCAACCCGGA
TGCCCAGCTCGAGTACTACGACACGCACGGCGTCGATGGTCGATGGATCT
TCCCCGCCGCCTACTACCTTCTGCATGAAGTTCTCGGCGACGGCACCACC
ATTGACTTCATATTTCTGGACACCCCGCTCCTGGTTCCCGAGGAAGCCGA
GACAGACGGCGCCCTCCACATGCCTCGTGAAACGACCAGGCGCCGCGCCC
AGCAATACGCCTGGCTCGAAAGCGCCCTGGCAAGGAGTCGGGCAGACTGG
CTCCTTGTCTTCGGACACCACCCTGTTTTCTCGACCGGAGAGCATGGCGA
CACGCCAGGGCTGGTGAGGCATCTCCTGCCCCTGCTCGGTAAGCATCGCG
TGGACATGTACATGTCTGGCCACGACCACAGCCTCCAGCACTTGCAGCAC
CACCCAGTGACCCCGACGCAGTTTTTTGTGAATGGCAACGGGGCCAAGCT
AGGAAGTGTGGGCCATGTGACGCAAGCGGCCCATGTCAAAGAGGCGGCTG
TGCGCCTGGGTTTCATGTCGCATCATATCACGAAATCGAAGCTGTGTACT
CGCGCCATTGACGCCCAGGGGAACGTTGTGTTTGAGCACACACAGGAAGC
GCAGAGGCGGCTCATCCTTCCCGCAGACACAATAGAGGACGATGAAATGG
GAAGGACGGGGGACTCAATGCAAAGCAAGAAGGGTCCGACCCGGAATTCA
AATGAGGAGTCGCTTGAGCCTCATCGAGGCCAGAAATCCTCTCGGGCGCG
GTCCCATGTTCGGCGAAGGCGTTATGACAACGTCGAGGTGACCACCTACA
GCAGGGAAGCTTATGTAACAGACCAGCGGGGTTCACTCGGGAGAAGCCAA
AACATAGCCCTGATCTTTTTAGGATTGATTGGCCTTATGTCATTGGTATT
GCTATTTGTTTACACCAGAAGACAGGCGGTTGCACCAAGTCACCGCGTCC
GCCGTACCCGGTCTCGATATTCACGCTTTATGGATACCGGATGTAGCATT
GGAGATAGATCAGATCCTCCAAGAAATTCGACATGATTGCCTGTGTCGTG
TACTCGTAGGATAAATTGTCTTGTCCGTCGACGAACAGGAAGCTCGTCCG
TTTCGCTCACAATTTCATCTAAATCGAGGAAATATCTCAAATCAAATTTG
TCAATTACAACTTAAGTAAATGTTGAAACAAGTGGGCCAAATAAAACATG
GTGTCTTGCTTCGTTTCGTAGACGAAAAATGTGTGTTCGGGAGGGTTCAC
TTCATGTCAACGAGAAGGAAGATGCCACCTCGACACACGCAATTTTGAGA
CTGTGATATCGTAAATGGAACAAAACGCTAATCGTGAAGCCTTTGGGAAT
TAAATTTCCCTGTCCTATTGAAA
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protein sequence of rna4822

>rna4822-protein ID=rna4822-protein|Name=rna4822|organism=Nannochloropsis gaditana|type=polypeptide|length=166bp
MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAGQ
VAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLG
PGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTG
ILTRDLIRMCVGCPEL
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mRNA from alignment at CM002464.1:448708..449442+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4822 ID=rna4822|Name=rna4822|organism=Nannochloropsis gaditana|type=mRNA|length=735bp|location=Sequence derived from alignment at CM002464.1:448708..449442+ (Nannochloropsis gaditana)
actcgtACGCTCTCTTCTCTTCACCTTGTGCTTCTACAGTCTCACGCCTC
CAGTGCGACTATCACAGGCCAAAGAATGTGGAAGCGCGCTTCAACGATGA
ATAAGGCCATCGTGGTGACCAGGTGCGGCAAACTTCATATTTTCCCAGTG
TTTTTCCTGACTACCAGGCGTAGTGTCTCGCGCAGCATCaaggctttttc
ctcctcatctacTTCTGCCGGTGAGCAGCTTAGATGGGGCGCCATAAAAT
CCAAAGGTGGCACAAATAACGCCGGCTCTGGTCCCTTTGGCTCAAGTGCT
GGTGGCGACTCACGCTTTGTGCGACGAAAACCAGGTCAGGTCGCGCCGGA
GACGATACAAGTTGACTTCGGTGAAGCAACAGGTGCCCTTTTTGATCGCA
TTGAAAAGGGCGTGGCAGGCATGCAAGAGCTCAACGACTTCTTTGTGGTA
AATCGACAAAATAAAGTCGAACTGGTGATTGACTTGGGTCCGGGCAAGGG
TGCTTTCACCTTGCAAAGAGACTGGGCTCACAATCAGCTGGTCTATCTCT
CGCCAGTGTCCGGATGCAACAAGTACGAGTACGAGCAAGCCGGAAGGAGG
TGGCTGAGCATTGCCGAGGATAAACACGATCTGACAGGCATTTTGACGCG
GGACTTGATCCGGATGTGTGTAGGCTGTCCAGAACTATAACGATCTTAAa
acaagaggaagcgaaagcGTTTTTAGTCGACATTC
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Coding sequence (CDS) from alignment at CM002464.1:448708..449442+

>rna4822 ID=rna4822|Name=rna4822|organism=Nannochloropsis gaditana|type=CDS|length=1002bp|location=Sequence derived from alignment at CM002464.1:448708..449442+ (Nannochloropsis gaditana)
ATGTGGAAGCGCGCTTCAACGATGAATAAGGCCATCGTGGTGACCAGGTG
CGGCAAACTTCATATTTTCCCAGTGTTTTTCCTGACTACCAGGCGTAGTG
TCTCGCGCAGCATCaaggctttttcctcctcatctacTTCTGCCGGTCAG
GTCGCGCCGGAGACGATACAAGTTGACTTCGGTGAAGCAACAGGTGCCCT
TTTTGATCGCATTGAAAAGGGCGTGGCAGGCATGCAAGAGCTCAACGACT
TCTTTGTGGTAAATCGACAAAATAAAGTCGAACTGGTGATTGACTTGGGT
CCGGGCAAGGGTGCTTTCACCTTGCAAAGAGACTGGGCTCACAATCAGCT
GGTCTATCTCTCGCCAGTGTCCGGATGCAACAAGTACGAGTACGAGCAAG
CCGGAAGGAGGTGGCTGAGCATTGCCGAGGATAAACACGATCTGACAGGC
ATTTTGACGCGGGACTTGATCCGGATGTGTGTAGGCTGTCCAGAACTATA
AATGTGGAAGCGCGCTTCAACGATGAATAAGGCCATCGTGGTGACCAGGT
GCGGCAAACTTCATATTTTCCCAGTGTTTTTCCTGACTACCAGGCGTAGT
GTCTCGCGCAGCATCaaggctttttcctcctcatctacTTCTGCCGGTCA
GGTCGCGCCGGAGACGATACAAGTTGACTTCGGTGAAGCAACAGGTGCCC
TTTTTGATCGCATTGAAAAGGGCGTGGCAGGCATGCAAGAGCTCAACGAC
TTCTTTGTGGTAAATCGACAAAATAAAGTCGAACTGGTGATTGACTTGGG
TCCGGGCAAGGGTGCTTTCACCTTGCAAAGAGACTGGGCTCACAATCAGC
TGGTCTATCTCTCGCCAGTGTCCGGATGCAACAAGTACGAGTACGAGCAA
GCCGGAAGGAGGTGGCTGAGCATTGCCGAGGATAAACACGATCTGACAGG
CATTTTGACGCGGGACTTGATCCGGATGTGTGTAGGCTGTCCAGAACTAT
AA
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Synonyms
Publications