EWM25875.1, cds4810 (CDS) Nannochloropsis gaditana

Overview
NameEWM25875.1
Unique Namecds4810
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:448783..448927 +
Alignment locationCM002464.1:449042..449397 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25875.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g32.5567.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:448783..448927 +
CM002464.1supercontigCM002464.1:449042..449397 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0008199ferric iron binding
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR002908Frataxin/CyaY
Homology
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|585107743|gb|EWM25875.1| (hypothetical protein Naga_100054g32 [Nannochloropsis gaditana])

HSP 1 Score: 348.591 bits (893), Expect = 1.282e-121
Identity = 166/166 (100.00%), Postives = 166/166 (100.00%), Query Frame = 0
Query:    1 MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166
            MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL
Sbjct:    1 MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|553195204|ref|XP_005856100.1| (hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526] >gi|422292935|gb|EKU20236.1| hypothetical protein NGA_0332000 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 328.561 bits (841), Expect = 3.176e-113
Identity = 166/204 (81.37%), Postives = 166/204 (81.37%), Query Frame = 0
Query:    1 MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAG--------------------------------------QVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166
            MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAG                                      QVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL
Sbjct:    1 MWKRASTMNKAIVVTRCGKLHIFPVFFLTTRRSVSRSIKAFSSSSTSAGEQLRWGAIKSKGGTNNAGSGPFGSSAGGDSRFVRRKPGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 204          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|298708144|emb|CBJ30485.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 76.2554 bits (186), Expect = 7.707e-14
Identity = 41/128 (32.03%), Postives = 71/128 (55.47%), Query Frame = 0
Query:   39 KAFSSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCPEL 166
            K  S+ +  A +   E  + +  +A     D++EK +  M+  ND F V R+  +E+  +LGP  G + ++ D +  Q+  +SP SG ++Y +++   RW+  A DKHD  G+LTRD+I+   G P+ 
Sbjct:  110 KNMSAQAQKANKEFGELSREEIRKAGEEEVDKVEKALKAMEPFNDVFEVRREG-LEVFAELGPEVGTYWIKFDLSIYQICLMSPRSGPHRYIFDKGSGRWIGEA-DKHDFQGMLTRDIIQSACGIPDF 235          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|1072224671|gb|OEU09420.1| (hypothetical protein FRACYDRAFT_264140 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 70.8626 bits (172), Expect = 5.900e-12
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 0
Query:   42 SSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQELNDFFVVNRQNKVEL----VIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRM-CVGCPEL 166
            +SSST      P +   +F +A   L D++E  +  M+  NDFF   R +K +L     IDLGP KG +T++     +   Y SPVSG   Y       +W++I+ D H   G+L RDLIR  C+G P+L
Sbjct:  100 ASSSTLQRLHDPVSNSKEFCQAASELLDKLEVALEPMKSKNDFFETER-SKGDLGEIYKIDLGPIKGLYTIEISETEHVFEYGSPVSGTYMYCKSSITGQWINIS-DGHHFEGMLVRDLIRSDCLGLPKL 227          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|566029124|gb|ETI52035.1| (hypothetical protein F443_04751, partial [Phytophthora parasitica P1569] >gi|568054852|gb|ETM51625.1| hypothetical protein L914_04587, partial [Phytophthora parasitica])

HSP 1 Score: 66.2402 bits (160), Expect = 6.346e-11
Identity = 38/124 (30.65%), Postives = 61/124 (49.19%), Query Frame = 0
Query:   42 SSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQE-LNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            ++  T   ++ P+  +  F   +    DR++  V  +   +ND F + R    ELVI        F ++   +  Q+ +LSPVSG   Y++    +RW     D HD+ G+LTRDL+R C G P
Sbjct:    9 AAGGTRRRRLKPKLPKDKFTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTN--SKEFVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRW-EDETDSHDIEGLLTRDLMRFCAGIP 129          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|675186461|ref|XP_008902115.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|567966433|gb|ETK91880.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568024426|gb|ETL98461.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568097357|gb|ETN12099.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570332818|gb|ETO80766.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570992087|gb|ETP49685.1| hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 66.2402 bits (160), Expect = 8.374e-11
Identity = 38/124 (30.65%), Postives = 62/124 (50.00%), Query Frame = 0
Query:   42 SSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQE-LNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            ++  T   ++ P+  +  F   +    DR++  V  +   +ND F + R    ELVI     +  F ++   +  Q+ +LSPVSG   Y++    +RW     D HD+ G+LTRDL+R C G P
Sbjct:   30 AAGGTRRRRLKPKLPKDKFTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRW-EDETDSHDIEGLLTRDLMRFCAGIP 150          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|1173936545|gb|OQR87470.1| (hypothetical protein ACHHYP_08818 [Achlya hypogyna])

HSP 1 Score: 64.3142 bits (155), Expect = 3.585e-10
Identity = 40/129 (31.01%), Postives = 56/129 (43.41%), Query Frame = 0
Query:   37 SIKAFSSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQ-ELNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            S  A S  +T   Q A +     F     +  DR+E  +A +   +N  FVV R  K    + +      F L       ++ + SP+SG   Y Y     RW     D HD+ G+LTRDL+R C G P
Sbjct:    9 STHAVSIPTTHLKQHAKKLTPDKFKALATSFLDRVESAIAPLHAPVNTVFVVER-TKTPAKLTIQTATHLFELAVLTKAQKVEFTSPISGLRTYVYNSKTSRW-EDETDHHDVEGLLTRDLMRTCTGIP 135          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|970616308|gb|KUF64492.1| (hypothetical protein AM587_10017222 [Phytophthora nicotianae])

HSP 1 Score: 65.0846 bits (157), Expect = 2.303e-9
Identity = 37/116 (31.90%), Postives = 58/116 (50.00%), Query Frame = 0
Query:   50 QVAPETIQVDFGEATGALFDRIEKGVAGMQE-LNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            ++ P+  +  F   +    DR++  V  +   +ND F + R    ELVI        F ++   +  Q+ +LSPVSG   Y++    +RW     D HD+ G+LTRDL+R C G P
Sbjct:  305 RLKPKLPKDKFTTLSTEFLDRVQAAVEPLHPPINDDFQLQRDGNGELVIRTN--SKEFVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRW-EDETDSHDIEGLLTRDLMRFCAGIP 417          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|567995136|gb|ETL45279.1| (hypothetical protein, variant [Phytophthora parasitica] >gi|570956829|gb|ETP21808.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 62.3882 bits (150), Expect = 2.554e-9
Identity = 37/124 (29.84%), Postives = 61/124 (49.19%), Query Frame = 0
Query:   42 SSSSTSAGQVAPETIQVDFGEATGALFDRIEKGVAGMQE-LNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            ++  T   ++ P+  +  F   +    DR++  V  +   +ND F +      ELVI     +  F ++   +  Q+ +LSPVSG   Y++    +RW     D HD+ G+LTRDL+R C G P
Sbjct:   30 AAGGTRRRRLKPKLPKDKFTTLSTEFLDRVQAAVEPLHPPINDDFQLQCDGNGELVIRTNSKE--FVIKVLSSKQQIEFLSPVSGLRTYQWNLMTKRW-EDETDSHDIEGLLTRDLMRFCAGIP 150          
BLAST of EWM25875.1 vs. NCBI_GenBank
Match: gi|695437656|ref|XP_009532269.1| (hypothetical protein PHYSODRAFT_286902 [Phytophthora sojae] >gi|348672116|gb|EGZ11936.1| hypothetical protein PHYSODRAFT_286902 [Phytophthora sojae])

HSP 1 Score: 58.5362 bits (140), Expect = 2.415e-8
Identity = 31/84 (36.90%), Postives = 44/84 (52.38%), Query Frame = 0
Query:   81 LNDFFVVNRQNKVELVIDLGPGKGAFTLQRDWAHNQLVYLSPVSGCNKYEYEQAGRRWLSIAEDKHDLTGILTRDLIRMCVGCP 164
            +N+ F + R N  ELVI        F ++      Q+ + SPVSG   Y++    +RW     D HD+ G+LTRDL+R C G P
Sbjct:    8 VNEEFQLERDNNAELVI--RSNDKEFVIKVLSPKQQIEFTSPVSGLRTYQWNGMTKRW-EDETDSHDIEGLLTRDLMRFCAGIP 88          
The following BLAST results are available for this feature:
BLAST of EWM25875.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107743|gb|EWM25875.1|1.282e-121100.00hypothetical protein Naga_100054g32 [Nannochlorops... [more]
gi|553195204|ref|XP_005856100.1|3.176e-11381.37hypothetical protein NGA_0332000 [Nannochloropsis ... [more]
gi|298708144|emb|CBJ30485.1|7.707e-1432.03conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072224671|gb|OEU09420.1|5.900e-1236.92hypothetical protein FRACYDRAFT_264140 [Fragilario... [more]
gi|566029124|gb|ETI52035.1|6.346e-1130.65hypothetical protein F443_04751, partial [Phytopht... [more]
gi|675186461|ref|XP_008902115.1|8.374e-1130.65hypothetical protein, variant [Phytophthora parasi... [more]
gi|1173936545|gb|OQR87470.1|3.585e-1031.01hypothetical protein ACHHYP_08818 [Achlya hypogyna... [more]
gi|970616308|gb|KUF64492.1|2.303e-931.90hypothetical protein AM587_10017222 [Phytophthora ... [more]
gi|567995136|gb|ETL45279.1|2.554e-929.84hypothetical protein, variant [Phytophthora parasi... [more]
gi|695437656|ref|XP_009532269.1|2.415e-836.90hypothetical protein PHYSODRAFT_286902 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4822rna4822Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications