rna4808, rna4808 (mRNA) Nannochloropsis gaditana

Overview
Namerna4808
Unique Namerna4808
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1239
Alignment locationCM002464.1:417474..418955 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g18.5579.mrna
Orig protein idgnl|cribi|Naga_100054g18.5579
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:417474..418955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g18gene4644Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4808rna4808-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25887.1cds4796Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4808 ID=rna4808|Name=rna4808|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp
AGGACCGCGTTTTTCCAGTTTGCTATTACTCAAAAATTATCCGCCCGCTG
CTCGATGTGGAAACTGGAGCGCTTTTTTCAAAATGTGCTACACTACAGAA
CGAAAGATGCCCGAGTTTATGAGCTAACGACTCCTATGCTTTCCCCTCGA
AATTCATATTCCTGCCCGCCTGACCGTACAAGTGAGAGTGACGCCACTTC
AAGTCGTGGACCCTCCAGCCCCCGCAAGTTTCTTCACAGATGACCGCAAC
GTCACAGCACCTTCTATGCACGGCTGCTGGCACGATAGTATTACTTACGG
CCTTCAGATTCCTCGGGGCTGGCTACTTTCGGAATCTGATTAGGTGGCGG
AAAATGGCTCCGTGGTCCCCAAGACGGCAAAAGCTAGTGCCCGACAGCTC
GGAACGAGAGGACCTGAGCAGAGTAATAGCAGGAAAAATGGCACTCGTGG
ACGATTCTGAAGATAGAAAGTTTTTGAAAAGGCTTTATGAGAAAGTGCAG
TGCCTGGAAACGAAAATTCTGGCAAATCAGGTTGCCATGGAGGAATTGAC
TGACACTTTAGAGGATGCCCTCAGTCGACATCAGCAACAGACGGCTGTCA
CGCTTACGCCCCTTCAAAATGACGTGCTGCAGCTGAAAGAATCTTTGGCT
GCACTTGCAGCTCTGCTAGATACGTCTAAAACCGCCAGTGCAATCCCAGA
AAGGAGCTCTGAGCTGTCCGAGCAAAAGCGAGCCAAGGAGCAAGGCGATG
ACGGAGGAAGTGGAATATTCGGGACAGGAGCCATGGAGACTCAGTTCTCT
CATCTCACAACCGTTGCGACGGCTCTTGGTATCAAACCAAGATTTATGGA
GGGAGGAAGGAGCGGTTGTGCCGAGGGAAGCTTCCCATCTTACATTATTT
CAGACTGGTCCGAGCTATCCACTAGGTAGCGTGCACATGATAGAATCACT
TGGGCAGTATTATACAGCAGTCTTTTGGCTCCTTGAAAACAGCAAAGCGT
ATAAGACAGTTGTTGAAAAATTGAAAAACTAGTGAATGAGACGGGAATCT
ATCGCCATGCTTCGCAGCATCCTTGAAATCGGAACCCCCCCCTCAAGTAA
GCCTTGCCGCTCCCCACACATCCTGATCACATAACGTCGGGGAAACACCT
CTAAGAAGAGATGTAAATGCATAGCCTACAGCAGAACTTGAACCGAAAAA
AAGAACCAGGAAAGAAAAAAAGCCACAAATTTCTCTTCC
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protein sequence of rna4808

>rna4808-protein ID=rna4808-protein|Name=rna4808|organism=Nannochloropsis gaditana|type=polypeptide|length=331bp
MTGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSN
DAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIE
RHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQ
YEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENF
RLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATR
STALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRR
LIEKDLLLEIETLETLSVMTSKLSDFEISEK
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mRNA from alignment at CM002464.1:417474..418955+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4808 ID=rna4808|Name=rna4808|organism=Nannochloropsis gaditana|type=mRNA|length=1482bp|location=Sequence derived from alignment at CM002464.1:417474..418955+ (Nannochloropsis gaditana)
caGAGACCTGCAAGTTGTCGCTGCAATCGCCCATCTCTTAGCGCCACCAG
CTCGATTGACTGCTGAAGGCACTTATATAAGCATGACAGGAGCTACAAGC
CAAGAATGTGAACGTGAAGATAGGCGGTCTCGGCTACGTCCTCGGCCTCG
ATCCACGGCAGCTTGTCCGACAGGCTCTTCTTCGTCGAAGAGTGATTTTC
CTGTCGACTCTCCAGGACATCCATCTTCAAACGACGCGCAAGACATCGTG
GACAACTACCGGTGTGTGTGTCAGCAACTAAGAGCTTTTCGAGGGCGGGT
ATTGAATCATGAGGAAAaggccatggtggaggagataggAGCGGAGGCTC
GGGCCACGGCCCTGGGGAACCGTGCGATCGAACGCCATCAACATGACGAG
CAAGAAGACACGATGCGATCGCGCTTAAGAGCCAAAGATGGAGACATACG
AGAGAGGGCGCAATTCTCCCCGTGTAAAGAACAAGACGACGTGATGGATC
GATTTTTGCGTcggcaggaagaagaacatCAATACGAAAAGGCACGATTG
GAGACGTACTGTGGCAAACTCCAACGCCAGGCGCGTCAAGCCCTTCAGGC
AGCAAAAAGTGCACAGGTAAATATTATGTGCTAAGGCATGCATTCATAGT
ATTTTGCCAGACAGTAGCTCATTACATCCaactccttcctctcttccgca
CCTTAGCGCCAAGCCCTGATTGCCGAGACAGACCTGGAGCACGAATGCAA
CAGCTCGCGCCAAGAAAATTTTCGGTTGCAACAACAGATCGAGGAACTGG
CTCGAGGTTTGCAAGCTCAACGACGTGTAACGGCAGAACGTGACGCGGAA
ATTATCTCACTGCGAGAGCGTCTTTCAATGGCCCAAGCTCGGGAAGAAGC
GCTGGCTCAACAAGCGACTCGCAGCACGgctttgaaggaggaggttgaat
CTTTGCGAAAATGCCTGGAGCAGGCGAATGGAATGGTGCTATTTAAAAAA
AGCGGGGTgtcagaggaggcagagcgggCGAAAGTTGAAGCCAGGAGGCG
ACATTTGAGAGAGCAAAGGCGGCTGATAGAAAAGGACTTATTGCTGGAAA
TCGAAACGTTAGAAACTCTCTCTGTAATGACATCAAAGCTCTCAGATTTT
GAGATCTCGGAAAAGTAACGAAGAACTCAGTTGAACTGCTACATCGCCTA
TTCAGCATGCGTGTTTCGTGTTCATTTTCAAGCGCCTTCGTAACCTGAAA
GCAGAGATTGCCGTCAGATGTTTGTTCAGACCTAAGTCAGCTTTCTTACC
AGAAGTACAGAGTCTGGCAGCCCAGCGAAACCCCTAGGGTGTCGCAATTT
GCAAAGAGCGATGAATTAAATGCGTCCATTTCGATGTCGGAATTTCACAA
GGGGTCACGTTTTACTGTTCAAAAATTACTGTAACTGTTAATAGAATACC
GTCTACAGTTTCGAAACAAGAAAACTCTTTCC
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Coding sequence (CDS) from alignment at CM002464.1:417474..418955+

>rna4808 ID=rna4808|Name=rna4808|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at CM002464.1:417474..418955+ (Nannochloropsis gaditana)
ATGACAGGAGCTACAAGCCAAGAATGTGAACGTGAAGATAGGCGGTCTCG
GCTACGTCCTCGGCCTCGATCCACGGCAGCTTGTCCGACAGGCTCTTCTT
CGTCGAAGAGTGATTTTCCTGTCGACTCTCCAGGACATCCATCTTCAAAC
GACGCGCAAGACATCGTGGACAACTACCGGTGTGTGTGTCAGCAACTAAG
AGCTTTTCGAGGGCGGGTATTGAATCATGAGGAAAaggccatggtggagg
agataggAGCGGAGGCTCGGGCCACGGCCCTGGGGAACCGTGCGATCGAA
CGCCATCAACATGACGAGCAAGAAGACACGATGCGATCGCGCTTAAGAGC
CAAAGATGGAGACATACGAGAGAGGGCGCAATTCTCCCCGTGTAAAGAAC
AAGACGACGTGATGGATCGATTTTTGCGTcggcaggaagaagaacatCAA
TACGAAAAGGCACGATTGGAGACGTACTGTGGCAAACTCCAACGCCAGGC
GCGTCAAGCCCTTCAGGCAGCAAAAAGTGCACAGCGCCAAGCCCTGATTG
CCGAGACAGACCTGGAGCACGAATGCAACAGCTCGCGCCAAGAAAATTTT
CGGTTGCAACAACAGATCGAGGAACTGGCTCGAGGTTTGCAAGCTCAACG
ACGTGTAACGGCAGAACGTGACGCGGAAATTATCTCACTGCGAGAGCGTC
TTTCAATGGCCCAAGCTCGGGAAGAAGCGCTGGCTCAACAAGCGACTCGC
AGCACGgctttgaaggaggaggttgaatCTTTGCGAAAATGCCTGGAGCA
GGCGAATGGAATGGTGCTATTTAAAAAAAGCGGGGTgtcagaggaggcag
agcgggCGAAAGTTGAAGCCAGGAGGCGACATTTGAGAGAGCAAAGGCGG
CTGATAGAAAAGGACTTATTGCTGGAAATCGAAACGTTAGAAACTCTCTC
TGTAATGACATCAAAGCTCTCAGATTTTGAGATCTCGGAAAAGTAAATGA
CAGGAGCTACAAGCCAAGAATGTGAACGTGAAGATAGGCGGTCTCGGCTA
CGTCCTCGGCCTCGATCCACGGCAGCTTGTCCGACAGGCTCTTCTTCGTC
GAAGAGTGATTTTCCTGTCGACTCTCCAGGACATCCATCTTCAAACGACG
CGCAAGACATCGTGGACAACTACCGGTGTGTGTGTCAGCAACTAAGAGCT
TTTCGAGGGCGGGTATTGAATCATGAGGAAAaggccatggtggaggagat
aggAGCGGAGGCTCGGGCCACGGCCCTGGGGAACCGTGCGATCGAACGCC
ATCAACATGACGAGCAAGAAGACACGATGCGATCGCGCTTAAGAGCCAAA
GATGGAGACATACGAGAGAGGGCGCAATTCTCCCCGTGTAAAGAACAAGA
CGACGTGATGGATCGATTTTTGCGTcggcaggaagaagaacatCAATACG
AAAAGGCACGATTGGAGACGTACTGTGGCAAACTCCAACGCCAGGCGCGT
CAAGCCCTTCAGGCAGCAAAAAGTGCACAGCGCCAAGCCCTGATTGCCGA
GACAGACCTGGAGCACGAATGCAACAGCTCGCGCCAAGAAAATTTTCGGT
TGCAACAACAGATCGAGGAACTGGCTCGAGGTTTGCAAGCTCAACGACGT
GTAACGGCAGAACGTGACGCGGAAATTATCTCACTGCGAGAGCGTCTTTC
AATGGCCCAAGCTCGGGAAGAAGCGCTGGCTCAACAAGCGACTCGCAGCA
CGgctttgaaggaggaggttgaatCTTTGCGAAAATGCCTGGAGCAGGCG
AATGGAATGGTGCTATTTAAAAAAAGCGGGGTgtcagaggaggcagagcg
ggCGAAAGTTGAAGCCAGGAGGCGACATTTGAGAGAGCAAAGGCGGCTGA
TAGAAAAGGACTTATTGCTGGAAATCGAAACGTTAGAAACTCTCTCTGTA
ATGACATCAAAGCTCTCAGATTTTGAGATCTCGGAAAAGTAA
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Synonyms
Publications