EWM25887.1, cds4796 (CDS) Nannochloropsis gaditana

Overview
NameEWM25887.1
Unique Namecds4796
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:417556..418089 +
Alignment locationCM002464.1:418180..418641 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25887.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g18.5579.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:417556..418089 +
CM002464.1supercontigCM002464.1:418180..418641 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM25887.1 vs. NCBI_GenBank
Match: gi|585107755|gb|EWM25887.1| (hypothetical protein Naga_100054g18 [Nannochloropsis gaditana])

HSP 1 Score: 663.3 bits (1710), Expect = 0.000e+0
Identity = 331/331 (100.00%), Postives = 331/331 (100.00%), Query Frame = 0 
Query:    1 MTGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK 331
            MTGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK
Sbjct:    1 MTGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK 331
[Close]
BLAST of EWM25887.1 vs. NCBI_GenBank
Match: gi|553195245|ref|XP_005856110.1| (hypothetical protein NGA_0333000, partial [Nannochloropsis gaditana CCMP526] >gi|422292945|gb|EKU20246.1| hypothetical protein NGA_0333000, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 660.988 bits (1704), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0 
Query:    2 TGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK 331
            TGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK
Sbjct:    1 TGATSQECEREDRRSRLRPRPRSTAACPTGSSSSKSDFPVDSPGHPSSNDAQDIVDNYRCVCQQLRAFRGRVLNHEEKAMVEEIGAEARATALGNRAIERHQHDEQEDTMRSRLRAKDGDIRERAQFSPCKEQDDVMDRFLRRQEEEHQYEKARLETYCGKLQRQARQALQAAKSAQRQALIAETDLEHECNSSRQENFRLQQQIEELARGLQAQRRVTAERDAEIISLRERLSMAQAREEALAQQATRSTALKEEVESLRKCLEQANGMVLFKKSGVSEEAERAKVEARRRHLREQRRLIEKDLLLEIETLETLSVMTSKLSDFEISEK 330
The following BLAST results are available for this feature:
BLAST of EWM25887.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107755|gb|EWM25887.1|0.000e+0100.00hypothetical protein Naga_100054g18 [Nannochlorops... [more]
gi|553195245|ref|XP_005856110.1|0.000e+0100.00hypothetical protein NGA_0333000, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4808rna4808Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications