rna4807, rna4807 (mRNA) Nannochloropsis gaditana

Overview
Namerna4807
Unique Namerna4807
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length336
Alignment locationCM002464.1:416219..417457 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g17.5564.mrna
Orig protein idgnl|cribi|Naga_100054g17.5564
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:416219..417457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g17gene4643Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25872.1cds4795Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4807rna4807-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4807 ID=rna4807|Name=rna4807|organism=Nannochloropsis gaditana|type=mRNA|length=336bp
ATGCGATCGGTGCATGACTGCGGGCAGAGAGCGGTGCAAGTCCGTCACAA
GCATGTCGGGAGCTGCAGCCCATCGAGGGAGGATAGGGTGGAACGTAAAG
GAAAACTCATGAGGGTGTGCATGGATGCGAAGTGCTGGCTATCTACGTAT
GCTTTCATCCTACGCCAAAAAGCACTGAAGAATCTAAAAGGAAGAGAAAT
TTGTGGCTTTTTTTCTTTCCTGGTTCTTTTTTTCGGTTCAAGTTCTGCTG
TAGGCTATGCATTTACATCTCTTCTTAGAGGTGTTTCCCCGACGTTATGT
GATCAGGATGTGTGGGGAGCGGCAAGGCTTACTTGA
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protein sequence of rna4807

>rna4807-protein ID=rna4807-protein|Name=rna4807|organism=Nannochloropsis gaditana|type=polypeptide|length=229bp
MTATSQHLLCTAAGTIVLLTAFRFLGAGYFRNLIRWRKMAPWSPRRQKLV
PDSSEREDLSRVIAGKMALVDDSEDRKFLKRLYEKVQCLETKILANQVAM
EELTDTLEDALSRHQQQTAVTLTPLQNDVLQLKESLAALAALLDTSKTAS
AIPERSSELSEQKRAKEQGDDGGSGIFGTGAMETQFSHLTTVATALGIKP
RFMEGGRSGCAEGSFPSYIISDWSELSTR
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mRNA from alignment at CM002464.1:416219..417457-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4807 ID=rna4807|Name=rna4807|organism=Nannochloropsis gaditana|type=mRNA|length=1239bp|location=Sequence derived from alignment at CM002464.1:416219..417457- (Nannochloropsis gaditana)
AGGACCGCGTTTTTCCAGTTTGCTATTACTCAAAAATTATCCGCCCGCTG
CTCGATGTGGAAACTGGAGCGCTTTTTTCAAAATGTGCTACACTACAGAA
CGAAAGATGCCCGAGTTTATGAGCTAACGACTCCTATGCTTTCCCCTCGA
AATTCATATTCCTGCCCGCCTGACCGTACAAGTGAGAGTGACGCCACTTC
AAGTCGTGGACCCTCCAGCCCCCGCAAGTTTCTTCACAGATGACCGCAAC
GTCACAGCACCTTCTATGCACGGCTGCTGGCACGATAGTATTACTTACGG
CCTTCAGATTCCTCGGGGCTGGCTACTTTCGGAATCTGATTAGGTGGCGG
AAAATGGCTCCGTGGTCCCCAAGACGGCAAAAGCTAGTGCCCGACAGCTC
GGAACGAGAGGACCTGAGCAGAGTAATAGCAGGAAAAATGGCACTCGTGG
ACGATTCTGAAGATAGAAAGTTTTTGAAAAGGCTTTATGAGAAAGTGCAG
TGCCTGGAAACGAAAATTCTGGCAAATCAGGTTGCCATGGAGGAATTGAC
TGACACTTTAGAGGATGCCCTCAGTCGACATCAGCAACAGACGGCTGTCA
CGCTTACGCCCCTTCAAAATGACGTGCTGCAGCTGAAAGAATCTTTGGCT
GCACTTGCAGCTCTGCTAGATACGTCTAAAACCGCCAGTGCAATCCCAGA
AAGGAGCTCTGAGCTGTCCGAGCAAAAGCGAGCCAAGGAGCAAGGCGATG
ACGGAGGAAGTGGAATATTCGGGACAGGAGCCATGGAGACTCAGTTCTCT
CATCTCACAACCGTTGCGACGGCTCTTGGTATCAAACCAAGATTTATGGA
GGGAGGAAGGAGCGGTTGTGCCGAGGGAAGCTTCCCATCTTACATTATTT
CAGACTGGTCCGAGCTATCCACTAGGTAGCGTGCACATGATAGAATCACT
TGGGCAGTATTATACAGCAGTCTTTTGGCTCCTTGAAAACAGCAAAGCGT
ATAAGACAGTTGTTGAAAAATTGAAAAACTAGTGAATGAGACGGGAATCT
ATCGCCATGCTTCGCAGCATCCTTGAAATCGGAACCCCCCCCTCAAGTAA
GCCTTGCCGCTCCCCACACATCCTGATCACATAACGTCGGGGAAACACCT
CTAAGAAGAGATGTAAATGCATAGCCTACAGCAGAACTTGAACCGAAAAA
AAGAACCAGGAAAGAAAAAAAGCCACAAATTTCTCTTCC
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Coding sequence (CDS) from alignment at CM002464.1:416219..417457-

>rna4807 ID=rna4807|Name=rna4807|organism=Nannochloropsis gaditana|type=CDS|length=690bp|location=Sequence derived from alignment at CM002464.1:416219..417457- (Nannochloropsis gaditana)
ATGACCGCAACGTCACAGCACCTTCTATGCACGGCTGCTGGCACGATAGT
ATTACTTACGGCCTTCAGATTCCTCGGGGCTGGCTACTTTCGGAATCTGA
TTAGGTGGCGGAAAATGGCTCCGTGGTCCCCAAGACGGCAAAAGCTAGTG
CCCGACAGCTCGGAACGAGAGGACCTGAGCAGAGTAATAGCAGGAAAAAT
GGCACTCGTGGACGATTCTGAAGATAGAAAGTTTTTGAAAAGGCTTTATG
AGAAAGTGCAGTGCCTGGAAACGAAAATTCTGGCAAATCAGGTTGCCATG
GAGGAATTGACTGACACTTTAGAGGATGCCCTCAGTCGACATCAGCAACA
GACGGCTGTCACGCTTACGCCCCTTCAAAATGACGTGCTGCAGCTGAAAG
AATCTTTGGCTGCACTTGCAGCTCTGCTAGATACGTCTAAAACCGCCAGT
GCAATCCCAGAAAGGAGCTCTGAGCTGTCCGAGCAAAAGCGAGCCAAGGA
GCAAGGCGATGACGGAGGAAGTGGAATATTCGGGACAGGAGCCATGGAGA
CTCAGTTCTCTCATCTCACAACCGTTGCGACGGCTCTTGGTATCAAACCA
AGATTTATGGAGGGAGGAAGGAGCGGTTGTGCCGAGGGAAGCTTCCCATC
TTACATTATTTCAGACTGGTCCGAGCTATCCACTAGGTAG
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Synonyms
Publications