rna4804, rna4804 (mRNA) Nannochloropsis gaditana

Overview
Namerna4804
Unique Namerna4804
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length948
Alignment locationCM002464.1:411264..412227 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100054g14.5561.mrna
Orig protein idgnl|cribi|Naga_100054g14.5561
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:411264..412227 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100054g14gene4640Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4804rna4804-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25869.1cds4792Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4804 ID=rna4804|Name=rna4804|organism=Nannochloropsis gaditana|type=mRNA|length=948bp
ATGCCGCATGGAAGACCATGTTTCCTGCCAAGCACCATGATTGGGTCTGT
CCTTATGCTCCTTCTGGCCTCTGCCTCCTCGTTTTTCTTCAAGTCGCCGT
ATCCTGCTGCCACTGCCACCAGTGGAGCTTGCATGGCCCGACACCCGAAC
GGACGTTCTCGGGCAGTTTTGATGCCGTACGCTAATGATCAACAAGGCGA
TGGAATAGCTTCCAGCACAAACGAGTCACCTATCCGTGCAGCAGTGGTGA
CGGACAAGGCCAAAGCGGACTCTGAAGGATCAAGGAGCAAGCAGAGTCAA
AACGTCACTCTGCTTCAGGCATTGCGCCCAGGAATGCGTCTTCACGGGGG
AGTTGTAGGTGTAACAGAGTTTGCTGCATTTTTGGACGTTAAGGTCGTCC
GTGAGGGGCCAGGAGGGAAGTTGGTCCGCTGCAACGCCATGCTCCACCCG
CACGACGTCCCGGAAGGGATCAAGCTCCTGCGGGACTCGCATAACCAGCC
CTTGCCACTGGAGACTGACCCGAACGTAATCCGGCGAGGCATCCACGTGA
GCGTGTACGTGAAGGACGTGTTCCCCAACTCAGGGCGCTTCTCTGTGACC
CTCGACCCCTCCATCGACAAGGCCAAGGTGATTGCCGCGCGGAAGCAGAA
GCGGCTGCTGGGCAAGAAAAGAAACAAAGTGAAGAAGCTGGAGGGCGTGG
AGGAGGGTGCTGAGAAGCAGGCCCGGGTGGTCAAGCTCCTCCGGACGGCC
CTGTTGCTGGACATAGGAATGCCGGTGCCGGCATTTTTACCCCACAATTA
TATTCCTGATACGGTGCCTTTGGAGAGCATACGCCACCTGGGTGCTTTAT
TGAGGGTGCGAATAAAAGAGAGGACAGATAGACAAATTAAATGCGAGATG
ATCGAGGTGGAGCCGCCCTCAGACTGCGGTTCCGAGACTAAAGTATGA
back to top

protein sequence of rna4804

>rna4804-protein ID=rna4804-protein|Name=rna4804|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MKCIKLITSPGTALERSTSERRGLWLLLRPLACVFLGSWIGSIRIIPGRG
VPGDQLDFEYHRNLINEALIEEQ
back to top

mRNA from alignment at CM002464.1:411264..412227-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4804 ID=rna4804|Name=rna4804|organism=Nannochloropsis gaditana|type=mRNA|length=964bp|location=Sequence derived from alignment at CM002464.1:411264..412227- (Nannochloropsis gaditana)
ATGAAGTGTGTAATTGCCCCTTTCGCCTCCTTACACGGATTTTCTTACAT
GGATTTTCTAGCACCGACCTCCCTTCACTACAGATTTTTCAGCTTTTTGC
GGACAGCACAATACCTCGCACACTTTTGTCATTACGCAAGATAAAGCTTA
TCACATCTCCAGGTATAGGTATTTCAACTTGCATCTTTCGCGCTCTTAAG
CCGAGGATGCTAGCATTATCTCTAAGAGCTTTGCTTGCCATGACGTCTAG
CTCTTGGTCGCGCAGCGGGGTGGCCCGCGCGGCCACGTCATGGAGGATTC
CTTGCCAGCGATTAGAGAATGATACTTGTGAAGCGTGCTTTATCGCTCTC
CTCCCGCCTACTTCAGGGACAGCGCTAGAACGGTCGACTTCAGAGCGGAG
AGGACTGTGGTTGCTGCTGCGTCCATTAGCTTGCGTTTTTTTGGGGTCTT
GGATCGGGTTGGAAATAACTTCACATTTAGAAAACATTGGAGTAGACATT
TGCTTGTCTTTTTGCCCTTTCAGTCCATTTCTAGCGTCATATGCAAACGT
GTTTTTTTTACGAACTTGTCTTGCCATCATGAATAGTCCTCCGCAGATAA
AGAACGACAACCCACCAAGACAGGCGACTAAGAGAAAGACTATGGAAAAC
ATTGCATACTCGCTCATGTTGCGTACAATCAGCTGCCAAACAGCTGGGTA
TATATCCGGTGATTCCCCAGAAGCATCAGAATAATCCCAGGTAGAGGTGT
TCCCGGCGACCAGCTGGATTTCGAGTACCACAGGAACTTGATAAACGAAG
CCTTGATTGAGGTAAGAATAGGATTGAGAGAATAAATAAATAATGCATGA
AATGTTTTATGGGAATGGAGGCAGCGATGTTGATCCCTTAAGAAGAGAAA
AGCGCTTGCAGAGTACAATTCCCGTCGTGATTGTACTTTCTTTTCTTACC
TGAAGGAACAATAG
back to top

Coding sequence (CDS) from alignment at CM002464.1:411264..412227-

>rna4804 ID=rna4804|Name=rna4804|organism=Nannochloropsis gaditana|type=CDS|length=1110bp|location=Sequence derived from alignment at CM002464.1:411264..412227- (Nannochloropsis gaditana)
GAACAATAGAAGCATCAGAATAATCCCAGGTAGAGGTGTTCCCGGCGACC
AGCTGGATTTCGAGTACCACAGGAACTTGATAAACGAAGCCTTGATTGAG
GGACAGCGCTAGAACGGTCGACTTCAGAGCGGAGAGGACTGTGGTTGCTG
CTGCGTCCATTAGCTTGCGTTTTTTTGGGGTCTTGGATCGGATAAAGCTT
ATCACATCTCCAGATGAAGTGTGAACAATAGAAGCATCAGAATAATCCCA
GGTAGAGGTGTTCCCGGCGACCAGCTGGATTTCGAGTACCACAGGAACTT
GATAAACGAAGCCTTGATTGAGGGACAGCGCTAGAACGGTCGACTTCAGA
GCGGAGAGGACTGTGGTTGCTGCTGCGTCCATTAGCTTGCGTTTTTTTGG
GGTCTTGGATCGGATAAAGCTTATCACATCTCCAGATGAAGTGTGAACAA
TAGAAGCATCAGAATAATCCCAGGTAGAGGTGTTCCCGGCGACCAGCTGG
ATTTCGAGTACCACAGGAACTTGATAAACGAAGCCTTGATTGAGGGACAG
CGCTAGAACGGTCGACTTCAGAGCGGAGAGGACTGTGGTTGCTGCTGCGT
CCATTAGCTTGCGTTTTTTTGGGGTCTTGGATCGGATAAAGCTTATCACA
TCTCCAGATGAAGTGTGAACAATAGAAGCATCAGAATAATCCCAGGTAGA
GGTGTTCCCGGCGACCAGCTGGATTTCGAGTACCACAGGAACTTGATAAA
CGAAGCCTTGATTGAGGGACAGCGCTAGAACGGTCGACTTCAGAGCGGAG
AGGACTGTGGTTGCTGCTGCGTCCATTAGCTTGCGTTTTTTTGGGGTCTT
GGATCGGATAAAGCTTATCACATCTCCAGATGAAGTGTGAACAATAGAAG
CATCAGAATAATCCCAGGTAGAGGTGTTCCCGGCGACCAGCTGGATTTCG
AGTACCACAGGAACTTGATAAACGAAGCCTTGATTGAGGGACAGCGCTAG
AACGGTCGACTTCAGAGCGGAGAGGACTGTGGTTGCTGCTGCGTCCATTA
GCTTGCGTTTTTTTGGGGTCTTGGATCGGATAAAGCTTATCACATCTCCA
GATGAAGTGT
back to top
Synonyms
Publications