|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100440g3.2723.mrna |
| Orig protein id | gnl|cribi|Naga_100440g3.2723 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:141990..144876 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna48 ID=rna48|Name=rna48|organism=Nannochloropsis gaditana|type=mRNA|length=1839bp
CTCATGTAGTTATGCAATCTCGGGAATTTCCCAGATTTGCGAGCACGATG
AGCTTATCGTAGGCACATCGGAAAGACCACAAGTTCATGAAACGAGACTG
CAATGCGGACAATCTAGGACGAGGATGGACTGCGGCGACGTTTTTTCATG
CTATTTCTTTCGACCTGGTAGCTGGGAAATACTATACACCCTTCCATTGT
ATTAGAAATATGCGTTCGAGCGTCTTTTTACGTTACATGGCTGCGCATAG
GCCTACCACTCTTTCCAACTCACCATGGACAACATTCCCATTCAATGCCC
CGACATCAGCCAGAAACAAAGCATACATTTGAAAAAGGAAACAGAATATT
ATGCGACCGCTGTCCTGGTGTCTATAAAATATGCCAGACAGACCCGAGTT
GCGGTCGTGCGGCTCAGTTCTATCGTTCGCGTCCCTCGCTTCCATGGCCT
CGGCAGTTTTTATCCCGAGATTGGCTTGGATCGGTCAAACAAAGCGCGTC
TTATTCTACGATGAGGAGGAGAATACTATCGAAATCACCAGCCGATTTGC
CTTTGGCTTCGCGTGGACCCGACAAAGCATCATTACGGATGTCGATCAAG
TTGTCTATCGGCAGGATTCCTACCACTGGTAAGCTGTCTTTTTCCTGTTC
CCCCATTGCCTTCCTTCCTTTCGTGGCCGCGGCACATGAATCCCTCCGTT
TCTACGGATCAAATGACGTGTGCAGCCCTACACTCTATCTAACTTCCTCC
GTCGTGTTTCATCTCCTCGGTGTCGCCGACAGCACATTTTGTCCGAGAAA
AGCGGGTACTGGCAATCTTCCCTCGTTGGTTGTCAGCAGTGCGTCCTGCA
TGCCGCCCTCCTCTCACAACGCCTCGCACTCATCCCCCCGTTCCCTTCCT
TCTAGGTGCGAAGGCGACAGCCAAGGCATACCTACCGATACGCAAAGGCA
ACTCTGCCACCTACAGCGTCGGGTTTTTGAGACTACCCTGACTTATTTAT
GCCTCGCATTTGCAGTTAGCTTGATGTTAATCTGTGTGAAACCCAAGAGG
AGAAGAAACGTCTGTCTGGTCCTCGGTGTGGTGGCAATCCTCTCCGTCGC
CCAAGTAGGCACAGGGTTGGCGATGGTGGGAACATGGGCTGCCCTCAAGA
ACGCTTTGGAACGGTTCTTTTCCGAAGCATACGTGGAGGTCAATAACTTG
AAGATGAGTATCCAATTGGGTGGATACCTGGCTCTTGCCTCAGGTCTGGC
GGCGGCAGCGGCGACTTTCCTCGCTTTCTGCATGATTGTCGAATCGAATC
GGCGGGAAATTGTCGGGACGCCAAGGACGGTAGCTCGGAAAAAAGGGGAT
GTCTTGCTGCGTCAAGACAGAGAAGTAGGAACCTACGTGGCGGAGCCCAG
GGGTGGAGTGGAAATGAATGCATACCCGGAGTTTTCCTCCCATCGAGGTG
ACAGACTCAGGGAACCTGGGATTTCGTGGGGCGTAAGCGAGACCTCTTCG
CCCACTTCGCCCGTGCGACGGTTACCTCGTGGGCATGGGACTTGATAAGC
ATTCATTACAAAGGAGAGAGAGGAATCACTAAAGGGTGCTGTATGCCCGG
GGGGAAAATTGCTGGGAATGTAGAGAGAGCATCTTCGAACTGTATAATAG
GCGGTTGCGACGTCACAGTTGCCAGACATGAGATTCGCTACCGTGAGAAT
GGGCAAAAGAAAAAGAAAAATGAAGCTGAGCACGCATCGAGGACACGCGT
GGCTTTTATTTTTCCCTGACGGTCGCGTACTGCTGCCTACGTTTTAACGC
GTTCAGCCTACCAAAATGCACAATTATCCTTTTCAACAC back to topprotein sequence of rna48 >rna48-protein ID=rna48-protein|Name=rna48|organism=Nannochloropsis gaditana|type=polypeptide|length=307bp
MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLP
WPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMS
IKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLT
SSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRS
LPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKP
KRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALERVRGRGGGGGG
GGRVWIK back to topmRNA from alignment at CM002455.1:141990..144876- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna48 ID=rna48|Name=rna48|organism=Nannochloropsis gaditana|type=mRNA|length=2887bp|location=Sequence derived from alignment at CM002455.1:141990..144876- (Nannochloropsis gaditana)
CTCATGTAGTTATGCAATCTCGGGAATTTCCCAGATTTGCGAGCACGATG
AGCTTATCGTAGGCACATCGGAAAGACCACAAGTTCATGAAACGAGACTG
CAATGCGGACAATCTAGGACGAGGATGGACTGCGGCGACGTTTTTTCATG
CTATTTCTTTCGACCTGGTAGCTGGGAAATACTATACACCCTTCCATTGT
ATTAGAAATATGCGTTCGAGCGTCTTTTTACGTTACATGGCTGCGCATAG
GCCTACCACTCTTTCCAACTCACCATGGACAACATTCCCATTCAATGCCC
CGACATCAGCCAGAAACAAAGCATACATTTGAAAAAGGAAACAGAATATT
ATGCGACCGCTGTCCTGGTGTCTATAAAATATGCCAGACAGACCCGAGTT
GCGGTCGTGCGGTGAGTTATGTCTTCCCTTGGATTTGTTATCGTCCACGT
TTTGTTCGACTGCATGCGGAATGAATGGGGGGCATGCTTATTCACGTATC
CTATATGCATAGACGTCGCGGCATGAATGAAAACCTTCTGTATGATAGTT
TGGGCCGGTGGTTTGATGCGCGATAATCCGACTTGTGGAAATAGATGTCT
TTGCGTATTGCCATCAGCTTCACTTACCCACGTCATCTTGTATAGGCTCA
GTTCTATCGTTCGCGTCCCTCGCTTCCATGGCCTCGGCAGTTTTTATCCC
GAGTAAGTGTGAGATAGAAAGTCAATGAAGGAAAGAAGTGCCTGGAGGCT
TGAGGGCGGTCTTGGGAGTTGTGGCCTCATATAAGTCAGCATAATCGTTC
CTGAAAAAATGAAGTAGTAAATTAAAATCCTCTAACCATCATAACTTATC
ATGCTCCGTCGTGCCCGCTTTCCTCCGTCTCCCTTTTCCCCATCCTGCCC
TCCTCTCCTGCAGGATTGGCTTGGATCGGTCAAACAAAGCGCGTCTTATT
CTACGATGAGGAGGAGAATACTATCGAAATCACCAGCCGATTTGCCTTTG
GCTTCGCGTGGACCCGACAAAGCATCATTACGGATGTCGATCAAGTTGTC
TATCGGCAGGATTCCTACCACTGGTAAGCTGTCTTTTTCCTGTTCCCCCA
TTGCCTTCCTTCCTTTCGTGGCCGCGGCACATGAATCCCTCCGTTTCTAC
GGATCAAATGACGTGTGCAGCCCTACACTCTATCTAACTTCCTCCGTCGT
GTTTCATCTCCTCGGTGTCGCCGACAGCACATTTTGTCCGAGAAAAGCGG
GTACTGGCAATCTTCCCTCGTTGGTTGTCAGCAGTGCGTCCTGCATGCCG
CCCTCCTCTCACAACGCCTCGCACTCATCCCCCCGTTCCCTTCCTTCTAG
GTGCGAAGGCGACAGCCAAGGCATACCTACCGATACGCAAAGGCAACTCT
GCCACCTACAGCGTCGGGTTTTTGAGACTACCCTGACTTATTTATGCCTC
GCATTTGCAGTTAGCTTGATGTTAATCTGTGTGAAACCCAAGAGGAGAAG
GTGCGCTGATTTGGTTTCCTCTGGGAAAATCCCAGATAGGCAAGGTGTCG
CTAAGCCTTCTCCCCTCCTTTGCATTTTCACGCATGCTCGAGCGTCCCTT
GCTACCCTGCTTTTCCTCCTGCCCTCTATCCTGCTTACTTCGCTCCCTCC
CGCCTCATCAGAAACGTCTGTCTGGTCCTCGGTGTGGTGGCAATCCTCTC
CGTCGCCCAAGTAGGCACAGGGTTGGCGATGGTGGGAACATGGGCTGCCC
TCAAGAACGCTTTGGAACGGGTAAGAGGAAGAGGAGGAGGAGGAGGAGGA
GGAGGAAGGGTATGGATAAAGTAGGTCGAAGAAAAAGAAAGAAAGGAGGG
CAGGCAGGCGGGACGTCCTCAAGTGCACCCCTGAGGCTTTTTCTCAGAGG
AAGGAAAAAAAAACAAGCCTGTGAAAGAGGGATTGATCATCATATTGAAA
GGGCGAACAGCGAGCAAGGCAAGGTTTTCTGCTCCCCTCCGTAGCGTCTC
CTGCTTTCCTCCGCAGCGTCTCCCTGCACCCCATTCACTCCTTTCTCTCT
CTCTAGTTCTTTTCCGAAGCATACGTGGAGGTCAATAACTTGAAGATGAG
TATCCAATTGGGTGGATACCTGGCTCTTGCCTCAGGTCTGGCGGCGGCAG
CGGCGACTTTCCTCGCTTTCTGCATGATTGTCGAATCGAATCGGCGGGAA
ATTGTCGGGACGCCAAGGACGGTAGCTCGGAAAAAAGGGGTGAGGGACCA
AGGGGGGGCAAGAAAAAGAAAAGACGTGCATAAAACTTCCGACGTGACGG
ACGAAACATATCCTCCCAGGCAACAATCAAGCCGCGGATGGCGTTCCGTG
TTTATACCTTGTCAACATCTCAATTATGTCCGTCTTTCCCAATAGGATGT
CTTGCTGCGTCAAGACAGAGAAGTAGGAACCTACGTGGCGGAGCCCAGGG
GTGGAGTGGAAATGAATGCATACCCGGAGTTTTCCTCCCATCGAGGTGAC
AGACTCAGGGAACCTGGGATTTCGTGGGGCGTAAGCGAGACCTCTTCGCC
CACTTCGCCCGTGCGACGGTTACCTCGTGGGCATGGGACTTGATAAGCAT
TCATTACAAAGGAGAGAGAGGAATCACTAAAGGGTGCTGTATGCCCGGGG
GGAAAATTGCTGGGAATGTAGAGAGAGCATCTTCGAACTGTATAATAGGC
GGTTGCGACGTCACAGTTGCCAGACATGAGATTCGCTACCGTGAGAATGG
GCAAAAGAAAAAGAAAAATGAAGCTGAGCACGCATCGAGGACACGCGTGG
CTTTTATTTTTCCCTGACGGTCGCGTACTGCTGCCTACGTTTTAACGCGT
TCAGCCTACCAAAATGCACAATTATCCTTTTCAACAC back to topCoding sequence (CDS) from alignment at CM002455.1:141990..144876- >rna48 ID=rna48|Name=rna48|organism=Nannochloropsis gaditana|type=CDS|length=3696bp|location=Sequence derived from alignment at CM002455.1:141990..144876- (Nannochloropsis gaditana)
AAACGTCTGTCTGGTCCTCGGTGTGGTGGCAATCCTCTCCGTCGCCCAAG
TAGGCACAGGGTTGGCGATGGTGGGAACATGGGCTGCCCTCAAGAACGCT
TTGGAACGGGTAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGT
ATGGATAAAGTAGGATTGGCTTGGATCGGTCAAACAAAGCGCGTCTTATT
CTACGATGAGGAGGAGAATACTATCGAAATCACCAGCCGATTTGCCTTTG
GCTTCGCGTGGACCCGACAAAGCATCATTACGGATGTCGATCAAGTTGTC
TATCGGCAGGATTCCTACCACTGGTAAGCTGTCTTTTTCCTGTTCCCCCA
TTGCCTTCCTTCCTTTCGTGGCCGCGGCACATGAATCCCTCCGTTTCTAC
GGATCAAATGACGTGTGCAGCCCTACACTCTATCTAACTTCCTCCGTCGT
GTTTCATCTCCTCGGTGTCGCCGACAGCACATTTTGTCCGAGAAAAGCGG
GTACTGGCAATCTTCCCTCGTTGGTTGTCAGCAGTGCGTCCTGCATGCCG
CCCTCCTCTCACAACGCCTCGCACTCATCCCCCCGTTCCCTTCCTTCTAG
GTGCGAAGGCGACAGCCAAGGCATACCTACCGATACGCAAAGGCAACTCT
GCCACCTACAGCGTCGGGTTTTTGAGACTACCCTGACTTATTTATGCCTC
GCATTTGCAGTTAGCTTGATGTTAATCTGTGTGAAACCCAAGAGGAGAAG
GCTCAGTTCTATCGTTCGCGTCCCTCGCTTCCATGGCCTCGGCAGTTTTT
ATCCCGAATGCCCCGACATCAGCCAGAAACAAAGCATACATTTGAAAAAG
GAAACAGAATATTATGCGACCGCTGTCCTGGTGTCTATAAAATATGCCAG
ACAGACCCGAGTTGCGGTCGTGCGAAACGTCTGTCTGGTCCTCGGTGTGG
TGGCAATCCTCTCCGTCGCCCAAGTAGGCACAGGGTTGGCGATGGTGGGA
ACATGGGCTGCCCTCAAGAACGCTTTGGAACGGGTAAGAGGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAAGGGTATGGATAAAGTAGGATTGGCTTGGAT
CGGTCAAACAAAGCGCGTCTTATTCTACGATGAGGAGGAGAATACTATCG
AAATCACCAGCCGATTTGCCTTTGGCTTCGCGTGGACCCGACAAAGCATC
ATTACGGATGTCGATCAAGTTGTCTATCGGCAGGATTCCTACCACTGGTA
AGCTGTCTTTTTCCTGTTCCCCCATTGCCTTCCTTCCTTTCGTGGCCGCG
GCACATGAATCCCTCCGTTTCTACGGATCAAATGACGTGTGCAGCCCTAC
ACTCTATCTAACTTCCTCCGTCGTGTTTCATCTCCTCGGTGTCGCCGACA
GCACATTTTGTCCGAGAAAAGCGGGTACTGGCAATCTTCCCTCGTTGGTT
GTCAGCAGTGCGTCCTGCATGCCGCCCTCCTCTCACAACGCCTCGCACTC
ATCCCCCCGTTCCCTTCCTTCTAGGTGCGAAGGCGACAGCCAAGGCATAC
CTACCGATACGCAAAGGCAACTCTGCCACCTACAGCGTCGGGTTTTTGAG
ACTACCCTGACTTATTTATGCCTCGCATTTGCAGTTAGCTTGATGTTAAT
CTGTGTGAAACCCAAGAGGAGAAGGCTCAGTTCTATCGTTCGCGTCCCTC
GCTTCCATGGCCTCGGCAGTTTTTATCCCGAATGCCCCGACATCAGCCAG
AAACAAAGCATACATTTGAAAAAGGAAACAGAATATTATGCGACCGCTGT
CCTGGTGTCTATAAAATATGCCAGACAGACCCGAGTTGCGGTCGTGCGAA
ACGTCTGTCTGGTCCTCGGTGTGGTGGCAATCCTCTCCGTCGCCCAAGTA
GGCACAGGGTTGGCGATGGTGGGAACATGGGCTGCCCTCAAGAACGCTTT
GGAACGGGTAAGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAAGGGTAT
GGATAAAGTAGGATTGGCTTGGATCGGTCAAACAAAGCGCGTCTTATTCT
ACGATGAGGAGGAGAATACTATCGAAATCACCAGCCGATTTGCCTTTGGC
TTCGCGTGGACCCGACAAAGCATCATTACGGATGTCGATCAAGTTGTCTA
TCGGCAGGATTCCTACCACTGGTAAGCTGTCTTTTTCCTGTTCCCCCATT
GCCTTCCTTCCTTTCGTGGCCGCGGCACATGAATCCCTCCGTTTCTACGG
ATCAAATGACGTGTGCAGCCCTACACTCTATCTAACTTCCTCCGTCGTGT
TTCATCTCCTCGGTGTCGCCGACAGCACATTTTGTCCGAGAAAAGCGGGT
ACTGGCAATCTTCCCTCGTTGGTTGTCAGCAGTGCGTCCTGCATGCCGCC
CTCCTCTCACAACGCCTCGCACTCATCCCCCCGTTCCCTTCCTTCTAGGT
GCGAAGGCGACAGCCAAGGCATACCTACCGATACGCAAAGGCAACTCTGC
CACCTACAGCGTCGGGTTTTTGAGACTACCCTGACTTATTTATGCCTCGC
ATTTGCAGTTAGCTTGATGTTAATCTGTGTGAAACCCAAGAGGAGAAGGC
TCAGTTCTATCGTTCGCGTCCCTCGCTTCCATGGCCTCGGCAGTTTTTAT
CCCGAATGCCCCGACATCAGCCAGAAACAAAGCATACATTTGAAAAAGGA
AACAGAATATTATGCGACCGCTGTCCTGGTGTCTATAAAATATGCCAGAC
AGACCCGAGTTGCGGTCGTGCGAAACGTCTGTCTGGTCCTCGGTGTGGTG
GCAATCCTCTCCGTCGCCCAAGTAGGCACAGGGTTGGCGATGGTGGGAAC
ATGGGCTGCCCTCAAGAACGCTTTGGAACGGGTAAGAGGAAGAGGAGGAG
GAGGAGGAGGAGGAGGAAGGGTATGGATAAAGTAGGATTGGCTTGGATCG
GTCAAACAAAGCGCGTCTTATTCTACGATGAGGAGGAGAATACTATCGAA
ATCACCAGCCGATTTGCCTTTGGCTTCGCGTGGACCCGACAAAGCATCAT
TACGGATGTCGATCAAGTTGTCTATCGGCAGGATTCCTACCACTGGTAAG
CTGTCTTTTTCCTGTTCCCCCATTGCCTTCCTTCCTTTCGTGGCCGCGGC
ACATGAATCCCTCCGTTTCTACGGATCAAATGACGTGTGCAGCCCTACAC
TCTATCTAACTTCCTCCGTCGTGTTTCATCTCCTCGGTGTCGCCGACAGC
ACATTTTGTCCGAGAAAAGCGGGTACTGGCAATCTTCCCTCGTTGGTTGT
CAGCAGTGCGTCCTGCATGCCGCCCTCCTCTCACAACGCCTCGCACTCAT
CCCCCCGTTCCCTTCCTTCTAGGTGCGAAGGCGACAGCCAAGGCATACCT
ACCGATACGCAAAGGCAACTCTGCCACCTACAGCGTCGGGTTTTTGAGAC
TACCCTGACTTATTTATGCCTCGCATTTGCAGTTAGCTTGATGTTAATCT
GTGTGAAACCCAAGAGGAGAAGGCTCAGTTCTATCGTTCGCGTCCCTCGC
TTCCATGGCCTCGGCAGTTTTTATCCCGAATGCCCCGACATCAGCCAGAA
ACAAAGCATACATTTGAAAAAGGAAACAGAATATTATGCGACCGCTGTCC
TGGTGTCTATAAAATATGCCAGACAGACCCGAGTTGCGGTCGTGCG back to top
|