EWM30628.1, cds48 (CDS) Nannochloropsis gaditana

Overview
NameEWM30628.1
Unique Namecds48
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:144466..144582 -
Alignment locationCM002455.1:144175..144231 -
Alignment locationCM002455.1:143377..143963 -
Alignment locationCM002455.1:143053..143215 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30628.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100440g3.2723.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:144466..144582 -
CM002455.1supercontigCM002455.1:144175..144231 -
CM002455.1supercontigCM002455.1:143377..143963 -
CM002455.1supercontigCM002455.1:143053..143215 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
[Close]
BLAST of EWM30628.1 vs. NCBI_GenBank
Match: gi|585113306|gb|EWM30628.1| (hypothetical protein Naga_100440g3 [Nannochloropsis gaditana])

HSP 1 Score: 625.165 bits (1611), Expect = 0.000e+0
Identity = 307/307 (100.00%), Postives = 307/307 (100.00%), Query Frame = 0 
Query:    1 MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALERVRGRGGGGGGGGRVWIK 307
            MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALERVRGRGGGGGGGGRVWIK
Sbjct:    1 MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALERVRGRGGGGGGGGRVWIK 307
[Close]
BLAST of EWM30628.1 vs. NCBI_GenBank
Match: gi|585113305|gb|EWM30627.1| (hypothetical protein Naga_100440g3 [Nannochloropsis gaditana])

HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0
Identity = 290/290 (100.00%), Postives = 290/290 (100.00%), Query Frame = 0 
Query:    1 MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALER 290
            MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALER
Sbjct:    1 MPRHQPETKHTFEKGNRILCDRCPGVYKICQTDPSCGRAAQFYRSRPSLPWPRQFLSRDWLGSVKQSASYSTMRRRILSKSPADLPLASRGPDKASLRMSIKLSIGRIPTTGKLSFSCSPIAFLPFVAAAHESLRFYGSNDVCSPTLYLTSSVVFHLLGVADSTFCPRKAGTGNLPSLVVSSASCMPPSSHNASHSSPRSLPSRCEGDSQGIPTDTQRQLCHLQRRVFETTLTYLCLAFAVSLMLICVKPKRRRNVCLVLGVVAILSVAQVGTGLAMVGTWAALKNALER 290
The following BLAST results are available for this feature:
BLAST of EWM30628.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585113306|gb|EWM30628.1|0.000e+0100.00hypothetical protein Naga_100440g3 [Nannochloropsi... [more]
gi|585113305|gb|EWM30627.1|0.000e+0100.00hypothetical protein Naga_100440g3 [Nannochloropsi... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna48rna48Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications