rna4794, rna4794 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4794
Unique Name	rna4794
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1791
Alignment location	CM002464.1:378136..380278 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100054g1.5556.mrna
Orig protein id	gnl\|cribi\|Naga_100054g1.5556
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:378136..380278 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100054g1	gene4631	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4794	rna4794-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25864.1	cds4782	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:378136..380278+
coding sequence from alignment at CM002464.1:378136..380278+

mRNA sequence

>rna4794 ID=rna4794|Name=rna4794|organism=Nannochloropsis gaditana|type=mRNA|length=1791bp
ATGCGGGTCTCTGTCAAAAGCTTGACCTTGGGTATAGGCAGTTACTTAGG
CATTCTCGGTGGGGGGTATTATTGGGCATTGAGCCAACGGGAAGCAGCAG
CAAAAAAAGCGCTTGCAGAGAAAGCGGAGGATGCAGCGGGCAAGCCGAAG
CGTTTCTCGGAGACAGATCGATTGGCCATTTTTGGGGAGGGGGCTTCGAA
GTACGATAAAGAAATCGGGACGGATGAGATCGTGATGGGCCTGAACTTGT
TGCGGTGGTGGTTGTTGCGGCAGGCTCGGGGGAAGATTTTGGAGGTGGCG
GGAGGCACCGGACGAAACCTGGACTACTTCCCCAAGGGGGCCAATCTCAC
AATTATCGATTTGTGTGATAGGATGATGGCCGAAACAGAGCGGAAGCTAA
GAAAAAGTCGCCGGGGCGATGTGCTTTTCGGGAAAATGGACGTGAGCCAA
ATGAGTTTTCCCGATCGCACATTTGACACGGTTTGTGATACCTTCGGACT
CTGTTCCTTCGAGGATCCGAAGGTGGCTCTGCAAGAAATGGAGCGAGTTT
GCAAGGACGATGGGCAAATTTTGCTCCTTGAGCACGGTCGGAGCACGTAC
GACTGGTTGAACGAGATATTGGATAAAAATAGCCATCGGCACACGGCTCG
CTGGGGATGTGTGTGGAATCGGGACATCGAAAGCCTTTGCCATGATGCAG
GTCTGGAGGTAACGAGCATTTCGCGATGGCATTTTGGGACCACTTACATG
ATCCATGCCAAGCCCGGACGAAGAGAAGCAGATAGAAGGAAAGGACCAGT
GACTACAGGAAAGCACGCCCAAGACATGTCCAAAAACAACAAGAAGGTGG
TACTGATCACGGGCGGAACCGGCTTGGTTGGGAAAGGGATCGAGGACTTC
ATCTCTAGCGACCCGATTGCACAAGAGTCGGAAAGCTACGTTTTCCTCAG
CTCCAAGGACGGAGACCTCCGGGACAAAGCTCAGACCTACGCCATCTTCG
AGAAGCACCGACCGGCCTATGTGGTGCATTTAGCGGCCTTGGTGGGGGGC
CTCTTTCGCAACATGGCCCAGAAAGTGGAGTTCTACCGCGAGAACATGCT
GATCAACGACAACGTGATGGAGGCCTGCAAGGACTTCAAAGTGGAGAAGC
TGGTCTCCTGCCTCTCCACCTGCATCTTCCCCGACAAGACCACCTACCCC
ATCGACGAAACCATGATCCATAACGGACCCCCTCACGCCTCCAACGAAGG
CTACGCATACGCCAAGCGCATGCTTGACGTCATGTCTCGGTGTTACAAGG
AGGAGTACGGCTGCAACTTCACCTCCATTATTCCCACGAACATCTACGGG
CCTCACGACAACTTCAACATTCAGGATGGTCATGTTATCCCTGGACTGGT
CCACAAGTGCTACCTGGCCGAGCAGGCCGGCACTGACTTTACGATCTGGG
GGTCTGGCAAGCCATTGCGGCAATTTATCTACTCGCGGGATCTGGCTGAG
CTGATCATTTGGACCATGCGGGAATATCATTCCGCCGACCCGCTTATCCT
TTCTGTGGGAGAGGAGGATGAGGTTTCGATCGGTACGCTCGCCGAGACTG
TGGCCAAGGCCATGGAATTTAAGGGGAACGTTGTGTTTGACACCAGCAAG
GCGGACGGTCAATACAAGAAAACAGCCAGCAATTTAAAGCTCCGCTCTCT
CCGCCCCGATTTTCGCTTCACGTCAATTGAAGAGGGTTTGGAGAAGACTT
GCGCCTGGTTCAAGGAAAATTACGCGACTGCCCGGAAATGA

protein sequence of rna4794

>rna4794-protein ID=rna4794-protein|Name=rna4794|organism=Nannochloropsis gaditana|type=polypeptide|length=516bp
PSGGPSRPAPDPTPLDLPPFEARRLAEAPGGSERMEEGIDWLLNAGGPIM
ALDLCPVSSTDTTLAVVGTSCLAPAAGTASDVEVMEEAPGSPRLHVKGRP
TREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLG
ENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIPLQPVQE
LLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPA
LSPPPPRRLFPARRFYDAREAPLPSLSAVDAVAWHPTLPDLFVTGGHDCS
LRLWDLRKPFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPE
EALRVRFYRHEAPVYDGVTALDAVFDPAVEGAVVVSVGKDGKMAVMVVDK
EGLIPRRVGTAPTRTCLMTLMTLRGGDRAVPGKHADCEDAGGKETETRRL
TCDLTFAKAPVRGELVEVSPSGVPQVPVRVGLTAARVVMDGRGDPLVGVG
GFSGLGRFLGIRRFLT

mRNA from alignment at CM002464.1:378136..380278+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4794 ID=rna4794|Name=rna4794|organism=Nannochloropsis gaditana|type=mRNA|length=2143bp|location=Sequence derived from alignment at CM002464.1:378136..380278+ (Nannochloropsis gaditana)
CCTTCTGgcggcccctcccgcccagccccGGACCCCACCCCTCTCGACTT
GCCCCCCTTTGAGGCCCGGCGTCTGGCGGAGGCCCCgggcggatcggaac
ggatggaggagggaatcgaCTGGCTCCTGAACGCGGGGGGGCCGATCATG
GCGCTTGACCTGTGCccggtctcctccaccgacacgaccctggcggtggt
ggggacgAGCTGCTTGGCTCCGGCCGCGGGCACGGCctcggacgtggagg
tgatggaAGAGGCCCCGGGGAGCCCCCGGCTCCACGTCAAGGGGCGGCCG
ACAAGGGAGATGAACCTCCTGCAAATatgggccgtggaggggggcggggg
aggggcacagaagggaggaagcgcgacGCTTTTGTACGCGATCGAGCACG
CCTTTGGACCGGTCTGGGACGCCCGGTGGTTGCCAGCCGAGGTCCTGGGG
GAGAAcggggggacggaggacgtgatgggcTCCCTGGTGGCCGTCTTCGG
GGATGGTTCTGCGCGCGTCtacgtcctccccctgcccccccgcctccccg
gccccccttCGGCCCCGGGGCCCGTCATCCCGCTCCAGCCCGTGCAggag
ctcctcccccctcggggCACCTGCCTAACCaccgtccgtccctcccctca
cgACCCCAGCCAGCTCCTGTGCGGCGCCACCAACGGCATGGCCCTGCTCT
ACCGCCTGgagcttcctctcctctcctgccctttcccctcccttcccgcc
ctgtctccgcccccgccgcgccgtctcttccccgcccgccgcttTTACGA
CGCCCGCGAggcccctctgccctccctgagcgccgtggacgcggtggccT
GGCACCCCACGCTCCCCGACCTATTCGTTACCGGCGGGCACGACTGCAGC
CTGCGCCTGTGGGACCTGCGCAAGCCTTTCCGGCCCGTGGTGGAGCGGGG
AAGCTTCCGCCTGTGCCAGACCACGGCCTGGCTGCCAAACGGGGTCGGGT
GCCTGGCCGGGTTTGCGAACGGAGCCGTGCGGCTGCTGGGGCTGCCCGAG
GAGGCCCTCCGGGTCCGCTTCTACCGGCACGAGGCCCCTGTCTACGACGG
GGTGACGGCCCTGGACGCGGTCTTCGACCCGGCGGTtgagggggcggtgg
tggtgagtgtaggcaaggacgggaagatGGCGGTGATGGtcgtggacaag
gaaggctTGATTCCGCGCCGGGTCGGGACCGCGCCGACTCGGACCTGCCT
CATGACCCTCATGACCCTCCGGGGGGGCGACCGGGCGGTCCCTGGAAAGC
ATGCGGACTGCGAGGAtgctggggggaaggagacggagacaCGGCGCCTG
ACGTGCGATTTGACCTTCGCAAAGGCGCCCGTACGGGGGGAGTTGGTGGa
ggtctccccctccggcgtgCCGCAGGTGCCTGTGCGCGTGGGCTTGACGG
CCGCGCGAGTGGTGATGGACGGGAGAGGAGATCCTttggtgggggtgggg
gggttCTCGGGCCTCGGTCGTTTCCTGGGAATAAGGCGCTTCTTGACATA
AAGGGGtgggggccgtggggaacgagaaagcggagggtaCCAGAAacgga
aggcaggaggaagaaaacgcAGGGTGGTTGAGGGAAGAGGCTAAGGAAGG
GTAAGGTGAGGGATTTGTGGATATTTGTGCAGCATCGGAAGTGAGCTGGG
TGTCAACTCAGCGGTCTCCACGAGTGGGGGACTAGGCAGGTCGGCGAGAA
AGTGTCTACAGGGCCGCGGCGAGGCATGTGAGGTATTCGAGGGGGCAGGG
CAGAAGCAAGGATgccagagagagaggcggcgaCGACGCATTGGTCTGGC
AAGACACAAGCCCTTTTCAGTCCTTGATCACGTACAGGGCTTTTGAAGAT
TGCCATGGGGTCGACTGGCAACCTTGGGAGTCTCAAAGAAATGAGTTGGG
AGATATCCTTACGTTGTTGTACTTTCGGCCTAAGTGGAGCAGGCACTGCA
TTAGCTTCTGCGAGATTATGCATTATTCACATTTAAGAGTCGCACTCAAc
tcctttcatccctccGCGCTCATTTTCCTGCCCGTCCCCACCCGCAAGCG
CTTACATCCCGTCTCAAGGCGACATCTCGGTCCACATCTCCCC

Coding sequence (CDS) from alignment at CM002464.1:378136..380278+

>rna4794 ID=rna4794|Name=rna4794|organism=Nannochloropsis gaditana|type=CDS|length=1551bp|location=Sequence derived from alignment at CM002464.1:378136..380278+ (Nannochloropsis gaditana)
CCTTCTGgcggcccctcccgcccagccccGGACCCCACCCCTCTCGACTT
GCCCCCCTTTGAGGCCCGGCGTCTGGCGGAGGCCCCgggcggatcggaac
ggatggaggagggaatcgaCTGGCTCCTGAACGCGGGGGGGCCGATCATG
GCGCTTGACCTGTGCccggtctcctccaccgacacgaccctggcggtggt
ggggacgAGCTGCTTGGCTCCGGCCGCGGGCACGGCctcggacgtggagg
tgatggaAGAGGCCCCGGGGAGCCCCCGGCTCCACGTCAAGGGGCGGCCG
ACAAGGGAGATGAACCTCCTGCAAATatgggccgtggaggggggcggggg
aggggcacagaagggaggaagcgcgacGCTTTTGTACGCGATCGAGCACG
CCTTTGGACCGGTCTGGGACGCCCGGTGGTTGCCAGCCGAGGTCCTGGGG
GAGAAcggggggacggaggacgtgatgggcTCCCTGGTGGCCGTCTTCGG
GGATGGTTCTGCGCGCGTCtacgtcctccccctgcccccccgcctccccg
gccccccttCGGCCCCGGGGCCCGTCATCCCGCTCCAGCCCGTGCAggag
ctcctcccccctcggggCACCTGCCTAACCaccgtccgtccctcccctca
cgACCCCAGCCAGCTCCTGTGCGGCGCCACCAACGGCATGGCCCTGCTCT
ACCGCCTGgagcttcctctcctctcctgccctttcccctcccttcccgcc
ctgtctccgcccccgccgcgccgtctcttccccgcccgccgcttTTACGA
CGCCCGCGAggcccctctgccctccctgagcgccgtggacgcggtggccT
GGCACCCCACGCTCCCCGACCTATTCGTTACCGGCGGGCACGACTGCAGC
CTGCGCCTGTGGGACCTGCGCAAGCCTTTCCGGCCCGTGGTGGAGCGGGG
AAGCTTCCGCCTGTGCCAGACCACGGCCTGGCTGCCAAACGGGGTCGGGT
GCCTGGCCGGGTTTGCGAACGGAGCCGTGCGGCTGCTGGGGCTGCCCGAG
GAGGCCCTCCGGGTCCGCTTCTACCGGCACGAGGCCCCTGTCTACGACGG
GGTGACGGCCCTGGACGCGGTCTTCGACCCGGCGGTtgagggggcggtgg
tggtgagtgtaggcaaggacgggaagatGGCGGTGATGGtcgtggacaag
gaaggctTGATTCCGCGCCGGGTCGGGACCGCGCCGACTCGGACCTGCCT
CATGACCCTCATGACCCTCCGGGGGGGCGACCGGGCGGTCCCTGGAAAGC
ATGCGGACTGCGAGGAtgctggggggaaggagacggagacaCGGCGCCTG
ACGTGCGATTTGACCTTCGCAAAGGCGCCCGTACGGGGGGAGTTGGTGGa
ggtctccccctccggcgtgCCGCAGGTGCCTGTGCGCGTGGGCTTGACGG
CCGCGCGAGTGGTGATGGACGGGAGAGGAGATCCTttggtgggggtgggg
gggttCTCGGGCCTCGGTCGTTTCCTGGGAATAAGGCGCTTCTTGACATA
A

Synonyms

Publications