EWM25864.1, cds4782 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|585107732|gb|EWM25864.1| (hypothetical protein Naga_100054g1, partial [Nannochloropsis gaditana]) HSP 1 Score: 1014.6 bits (2622), Expect = 0.000e+0 Identity = 516/516 (100.00%), Postives = 516/516 (100.00%), Query Frame = 0
Query: 1 PSGGPSRPAPDPTPLDLPPFEARRLAEAPGGSERMEEGIDWLLNAGGPIMALDLCPVSSTDTTLAVVGTSCLAPAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIPLQPVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDAREAPLPSLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKPFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRHEAPVYDGVTALDAVFDPAVEGAVVVSVGKDGKMAVMVVDKEGLIPRRVGTAPTRTCLMTLMTLRGGDRAVPGKHADCEDAGGKETETRRLTCDLTFAKAPVRGELVEVSPSGVPQVPVRVGLTAARVVMDGRGDPLVGVGGFSGLGRFLGIRRFLT 516
PSGGPSRPAPDPTPLDLPPFEARRLAEAPGGSERMEEGIDWLLNAGGPIMALDLCPVSSTDTTLAVVGTSCLAPAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIPLQPVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDAREAPLPSLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKPFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRHEAPVYDGVTALDAVFDPAVEGAVVVSVGKDGKMAVMVVDKEGLIPRRVGTAPTRTCLMTLMTLRGGDRAVPGKHADCEDAGGKETETRRLTCDLTFAKAPVRGELVEVSPSGVPQVPVRVGLTAARVVMDGRGDPLVGVGGFSGLGRFLGIRRFLT
Sbjct: 1 PSGGPSRPAPDPTPLDLPPFEARRLAEAPGGSERMEEGIDWLLNAGGPIMALDLCPVSSTDTTLAVVGTSCLAPAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIPLQPVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDAREAPLPSLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKPFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRHEAPVYDGVTALDAVFDPAVEGAVVVSVGKDGKMAVMVVDKEGLIPRRVGTAPTRTCLMTLMTLRGGDRAVPGKHADCEDAGGKETETRRLTCDLTFAKAPVRGELVEVSPSGVPQVPVRVGLTAARVVMDGRGDPLVGVGGFSGLGRFLGIRRFLT 516
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|635372265|emb|CCI39486.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 99.7525 bits (247), Expect = 2.140e-18 Identity = 98/341 (28.74%), Postives = 146/341 (42.82%), Query Frame = 0
Query: 43 LNAGGPIMALDLCPVSSTDTTLAVVGTSCLA-PAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIP-LQPVQ--ELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDAREAPLPSLS-------AVDAVAWHPTLPDLFVTGGHDCSLRLWDLRK---PFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRH---EAPVYD 366
+N GGPI A+D P ++ V S A P +D + EEAP +G P L+QIWAV + L+YAI H G VW +W P E G G +G L A FGDG+ +V+ +P R S P + L+PV +L CL SPH +QLL G ++G L+ L ++ P + P R F D+ S A+ VAW P P +F T G+D +++WD+R+ PFR R ++ L + W +AG G + + + + + Y H ++P++D
Sbjct: 62 MNVGGPIWAMDWHPATAKQPKWNVTYLSIAAHPPCSIRNDQIISEEAPDHHYGEQRGGP----GLIQIWAV------STDLSLPYLMYAIAHNGGAVWGLKWCPQECKGMGG-----IGMLAACFGDGTVQVFHVP---RHEFSQSQERPCVERLEPVICGKLQKVVQMCLNW---SPHSANQLLTGGSDGSIALWDLANAYEVLHEDDKTSI----PIDVKPQRHFQDSDTITKLDTSDWGSGWVALRDVAWSPYDPYIFATTGNDSCIKIWDIRETRIPFRTHRLRSTWGL--SLHWFDERSVYVAG-DQGPIHCYDIFAGSFKTQ-YSHPQADSPIWD 373
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|325183118|emb|CCA17576.1| (conserved hypothetical protein [Albugo laibachii Nc14]) HSP 1 Score: 97.8265 bits (242), Expect = 7.538e-18 Identity = 100/343 (29.15%), Postives = 147/343 (42.86%), Query Frame = 0
Query: 43 LNAGGPIMALDLCPVSS-TDTTLAVVGTSCLAPAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLP--AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIPLQPV--QELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPAL-SPPPPRRLFPARRFYDAREAPL-------PSLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRK---PFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRH---EAPVYD 366
+NAGGPI A+D P +S +TT T P D + EE P KG L+QIWAV + L+YAI H G VW +W P EV+ + +G L A FGDG+ V V +P R V L+P+ + CL + SPH QLL G ++G L+ L + + L +P P + P RRF D+ P A+ AVAW P P +F + G+D L++WD+R+ PFR R ++ L + WL ++G G + +++ Y H ++P++D
Sbjct: 62 INAGGPIWAMDWHPATSMEETTECTYITIATHPPCSVKDDQIISEEPPDHHYCDQKG----GAGLIQIWAV------STSSSLPYLIYAIAHDGGAVWGLKWCPQPCEVM-------EGIGMLAACFGDGT--VQVFHVPRRESSQSQERTCVERLKPIICARIHNVIQMCL---QWSPHSADQLLTGGSDGSIALWNL-----AHVYEVLHGNDNPRHPIDVKPQRRFQDSDTVTKLDTFDWGPGWVALRAVAWSPFDPYIFASTGNDSVLKIWDIREPRIPFRTHRIRSTWGL--SLHWLDQRSVAISG-DQGPTHCYDIFVGTFKIQ-YTHPQVDSPIWD 373
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|635372264|emb|CCI39485.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 97.0561 bits (240), Expect = 1.282e-17 Identity = 102/356 (28.65%), Postives = 150/356 (42.13%), Query Frame = 0
Query: 43 LNAGGPIMALDLCPVSSTDTTLAVVGTSCLA-PAAGTASDVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLPAEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPRLPGPPSAPGPVIP-LQPVQ--ELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALL----YRLELPL----------LSCPFPSLPALSPPP-PRRLFPARRFYDAREAPLPSLS-------AVDAVAWHPTLPDLFVTGGHDCSLRLWDLRK---PFRPVVERGSFRLCQTTAWLPNGVGCLAGFANGAVRLLGLPEEALRVRFYRH---EAPVYD 366
+N GGPI A+D P ++ V S A P +D + EEAP +G P L+QIWAV + L+YAI H G VW +W P E G G +G L A FGDG+ +V+ +P R S P + L+PV +L CL SPH +QLL G ++G L LE+ L L+ + L P + P R F D+ S A+ VAW P P +F T G+D +++WD+R+ PFR R ++ L + W +AG G + + + + + Y H ++P++D
Sbjct: 62 MNVGGPIWAMDWHPATAKQPKWNVTYLSIAAHPPCSIRNDQIISEEAPDHHYGEQRGGP----GLIQIWAV------STDLSLPYLMYAIAHNGGAVWGLKWCPQECKGMGG-----IGMLAACFGDGTVQVFHVP---RHEFSQSQERPCVERLEPVICGKLQKVVQMCLNW---SPHSANQLLTGGSDGKRFLTAASMHLEVALPGVGSIALWDLANAYEVLHEDDKTSIPIDVKPQRHFQDSDTITKLDTSDWGSGWVALRDVAWSPYDPYIFATTGNDSCIKIWDIRETRIPFRTHRLRSTWGL--SLHWFDERSVYVAG-DQGPIHCYDIFAGSFKTQ-YSHPQADSPIWD 392
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|695410635|ref|XP_009525249.1| (hypothetical protein PHYSODRAFT_464205, partial [Phytophthora sojae] >gi|348682716|gb|EGZ22532.1| hypothetical protein PHYSODRAFT_464205, partial [Phytophthora sojae]) HSP 1 Score: 90.1225 bits (222), Expect = 1.775e-15 Identity = 85/306 (27.78%), Postives = 126/306 (41.18%), Query Frame = 0
Query: 43 LNAGGPIMALDLCPVS----STDTTLAVVGTSCLAPAAGTAS-------------------------DVEVMEEAPGSPRLHVKGRPTREMNLLQIWAVEGGGGGAQKGGSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPPR--LPGPPSAPGPVIPLQPVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
LN GGP+ A+D P + A++ T P G+ + VE + +P H P +L+QIWAV ++YAI+H G WD +W P A+ + + +MG L A FGDGS RV+ +P P L S G V PV PR L+ V+ SPH+ + LL G ++G L+ ++ + P P + P RR+ DA ++ A+ AV W P LF T G+D ++WD+R+P
Sbjct: 3 LNVGGPVWAMDWLPSKPAANAAAVAAALIKTKQKKPRRGSKAAKAATKGKENNKQWRFLALSTHPPCQVEDGKVVKNTPPDHYYDVPESARSLIQIWAV-----------PPRMVYAIDHESGVAWDLQWCPLAKKFPKADRRQKIMGILAACFGDGSMRVFEIPEVPEGMLQQEISKEGVVENNTPVVVARLPRILQLS-VQWSPHNWNMLLTGGSDGSVSLWNVKSAISESDTVGNEGSEPDP---IEPQRRYQDADTIGKQEAFDWGCGWVAIRAVVWSPFDEHLFATTGNDSVFKVWDIREP 293
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|970653776|gb|KUF92192.1| (Elongation of very long chain fatty acids protein 2 [Phytophthora nicotianae]) HSP 1 Score: 89.7373 bits (221), Expect = 3.966e-15 Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 0
Query: 90 GSPRLHVKGRPTREMNLLQIWAV--------EGGGGGAQKG-GSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPP--RLPGPPSAPGPVIPLQ-PVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
+P H P NL+QIWAV G G +K L+YAI+H G WD +W P + ++ E+++G L A FGDGS RV+ +P+ P RL ++ P+ PR L+ V+ SPH + LL G ++G L+ ++ + P P + P RRF DA ++ A+ AVAW P LF T G+D ++WD+R+P
Sbjct: 214 NTPPDHYYDVPESARNLIQIWAVPVQRPKTLTGKRGKTEKKPAKPRLVYAIDHESGVAWDLQWCPLVKKFPKSPRRENILGILAACFGDGSVRVFEVPMIPEERLQLNIGKEQRLVDKNIPIVVAKLPRIMQLS-VQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERAEPEP---IEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP 449
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|675198689|ref|XP_008908229.1| (hypothetical protein PPTG_12776 [Phytophthora parasitica INRA-310] >gi|568091919|gb|ETN06737.1| hypothetical protein PPTG_12776 [Phytophthora parasitica INRA-310]) HSP 1 Score: 89.7373 bits (221), Expect = 4.037e-15 Identity = 74/240 (30.83%), Postives = 110/240 (45.83%), Query Frame = 0
Query: 90 GSPRLHVKGRPTREMNLLQIWAV--------EGGGGGAQKG-GSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPP--RLPGPPSAPGPVIPLQ-PVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
+P H P NL+QIWAV G G +K L+YAI+H G WD +W P + ++ E+++G L A FGDGS RV+ +P+ P RL ++ P+ PR L+ V+ SPH + LL G ++G L+ ++ + P P + P RRF DA ++ A+ AVAW P LF T G+D ++WD+R+P
Sbjct: 214 NTPPDHYYDVPESARNLIQIWAVPVQRPKTLTGKRGKTEKKPAKPRLVYAIDHESGVAWDLQWCPLVKKFPKSPRRENILGILAACFGDGSVRVFEVPMIPEERLQLNIGKEQRLVDKNIPIVVAKLPRIMQLS-VQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERAEPEP---IEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP 449
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|970616383|gb|KUF64558.1| (General transcription factor 3C polypeptide 2 [Phytophthora nicotianae]) HSP 1 Score: 89.7373 bits (221), Expect = 4.081e-15 Identity = 73/235 (31.06%), Postives = 108/235 (45.96%), Query Frame = 0
Query: 95 HVKGRPTREMNLLQIWAV--------EGGGGGAQKG-GSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPP--RLPGPPSAPGPVIPLQ-PVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
H P NL+QIWAV G G +K L+YAI+H G WD +W P + ++ E+++G L A FGDGS RV+ +P+ P RL ++ P+ PR L+ V+ SPH + LL G ++G L+ ++ + P P + P RRF DA ++ A+ AVAW P LF T G+D ++WD+R+P
Sbjct: 219 HYYDVPESARNLIQIWAVPVQRPKTLTGKRGKTEKKPAKPRLVYAIDHESGVAWDLQWCPLVKKFPKSPRRENILGILAACFGDGSVRVFEVPMIPEERLQLNIGKEQRLVDKNIPIVVAKLPRIMQLS-VQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERAEPEP---IEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP 449
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|568038071|gb|ETM35617.1| (hypothetical protein L914_17512 [Phytophthora parasitica]) HSP 1 Score: 89.3521 bits (220), Expect = 6.322e-15 Identity = 74/240 (30.83%), Postives = 111/240 (46.25%), Query Frame = 0
Query: 90 GSPRLHVKGRPTREMNLLQIWAV--------EGGGGGAQKG-GSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPP--RLPGPPSAPGPVIPLQ-PVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
+P H P NL+QIWAV G G +K L+YAI+H G WD +W P + ++ E+++G L A FGDGS RV+ +P+ P RL ++ P+ PR L+ V+ SPH + LL G ++G L+ ++ + + P P + P RRF DA ++ A+ AVAW P LF T G+D ++WD+R+P
Sbjct: 214 NTPPDHYYDVPESARNLIQIWAVPVQRPETLTGKRGETEKKPVKPRLVYAIDHESGVAWDLQWCPLVKKFPKSPRRENILGILAACFGDGSVRVFEVPMIPEERLQLNIGKEQRLVDKNIPIVVAKLPRIMQLS-VQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERVEPEP---IEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP 449
BLAST of EWM25864.1 vs. NCBI_GenBank
Match: gi|570323675|gb|ETO71623.1| (hypothetical protein F444_12060 [Phytophthora parasitica P1976]) HSP 1 Score: 88.9669 bits (219), Expect = 6.843e-15 Identity = 74/240 (30.83%), Postives = 111/240 (46.25%), Query Frame = 0
Query: 90 GSPRLHVKGRPTREMNLLQIWAV--------EGGGGGAQKG-GSATLLYAIEHAFGPVWDARWLP-AEVLGENGGTEDVMGSLVAVFGDGSARVYVLPLPP--RLPGPPSAPGPVIPLQ-PVQELLPPRGTCLTTVRPSPHDPSQLLCGATNGMALLYRLELPLLSCPFPSLPALSPPPPRRLFPARRFYDA----REAPLP---SLSAVDAVAWHPTLPDLFVTGGHDCSLRLWDLRKP 309
+P H P NL+QIWAV G G +K L+YAI+H G WD +W P + ++ E+++G L A FGDGS RV+ +P+ P RL ++ P+ PR L+ V+ SPH + LL G ++G L+ ++ + + P P + P RRF DA ++ A+ AVAW P LF T G+D ++WD+R+P
Sbjct: 214 NTPPDHYYDVPESARNLIQIWAVPVQRPETLTGKRGETEKKPVKPRLVYAIDHESGVAWDLQWCPLVKKFPKSPRRENILGILAACFGDGSVRVFEVPMIPEERLQLNIGKEQRLVDKNIPIVVAKLPRIMQLS-VQWSPHTWNLLLTGGSDGSVSLWNIKSTVSESDSLGDERVEPEP---IEPQRRFQDADTIGKQEAFDWGCGWVAIRAVAWSPFDEHLFATTGNDSVFKVWDVREP 449 The following BLAST results are available for this feature:
BLAST of EWM25864.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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