rna4791, rna4791 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4791
Unique Name	rna4791
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2622
Alignment location	CM002464.1:366956..369696 +

Link to JBrowse

Properties


Property Name	Value
Product	retinitis pigmentosa gtpase regulator
Orig transcript id	gnl\|cribi\|Naga_100048g31.10266.mrna
Orig protein id	gnl\|cribi\|Naga_100048g31.10266
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:366956..369696 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g31	gene4628	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4791	rna4791-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25894.1	cds4779	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:366956..369696+
coding sequence from alignment at CM002464.1:366956..369696+

mRNA sequence

>rna4791 ID=rna4791|Name=rna4791|organism=Nannochloropsis gaditana|type=mRNA|length=2622bp
CCTCCCGTAACCCAGGTGCCGTTGTGAGAATCAACAGCACGCACCAAGCA
CTTATGTCCGCTTTCAAGCCGGAGAAGAGGGTGCATCTCTCCCCCAGGCT
GTACCTCCACGACAGTGACGGATCCCTCCACATCACTCAAGGCCAGCCTG
AGACGGTCCGTTCCCTGGTCATAATGGTACTGGATGGAGAACAATGCCTT
TTCTCGATTAAAACTTCCAGCACTTTGTCGTAAATCTTCCACATCTAACG
CCCTTAAAGCTGAGGGCCAGTGCCACACACTTGTCCCCTCGCTGCCTGTC
AAGAGCGCCAACCCGTCTCCTTTGGCCCCGAAGAAAGTCATGTCCCTGAC
AGGGCTCTCCGCGTTCAAGATGCAGGCCAGCGCCTCATCGGCCTGACTCA
CTCCTATATCATACAAACATACCAGCCCGTCCTCTGAGGCTGACGCCAAT
GTCGTGGTTTGTGAGGGGTGGAAGACCACCTTCGTCACCATGTCCGTGTG
GACGTCCGCGTATCGCCCCAGCCTCTCTCCACTTCCTCTGCTACCTCCTT
GTGCTCCTCCACTTGCTCCTCTAGATTCCTGCTTCGTTTGACGAGCATCG
AAAAAATCCACATGGCATCCCACCCCCACGGCCAACAAGCCCGACCCTTT
TCCAAAGGCGCAGCTGAGGGCTTCGTCGACTTGCTGAATCACACTCACAC
AGCCAGATTGCACCCGTAGATCCCACAAGCGCACAGTTTTATCCTCAGAA
GAGGAAGCGAGAAGGGACGGATGATCCGGCGAGGGACAAAGGCCGGTCAG
AGGACCCAAGTGCCCTTCCAGGGCAGAGGAGGATTTAGGCTCGAGCGTGT
AACGATCGTAGATTTTGATTTGATAGTTTGACAGCGCAGCAGCCAAAGTA
CTACCGTCAACAGTGTGTACACAATGAAGGACGTACCTAGACGGGTTTTG
CGTCGGAACGGACGTGGCGAGCGTCGTTGAGTTTGGACTTCACTGACCTC
CCGACCACCAAACTCGGATACATTCCTTAAAAGATACATTTATTGGTCTC
GCAGCCCGATCCCAAACTTACTCATTCTCGTCGCCATTGAATTCTTCTGT
TTGCCTACTGATAGGTGTCTGCAACGTGGTAATTTGTACTTTGGATGGTC
GGAGCAATCGAGGCGTTGGATAGGTCGCTAGTAGGGCGCCGCTCGTCGTG
GAAGCCATCATTTACTCGTCTACCATTCCGAGCAAATGATCCCTGTGGCA
TAAAGAGAAAAATATCGATACGTGGTTTAACATTGGCTGATATTTGTGTG
AGTCTCAAGGCTGTCCAGATGCGCCGATGTGATGGCGCAAGTACCTCTGG
GAGCAGGCGCTTGAAGCATCCGGCGATACGCCATTGCCTTCTTCTATTCA
CTTGGGCTCGCATTTCTTCTTATATCAAGAACACTTTGGCTCTTTGCAGC
CATATAGGGAGTCCCCAGCGAGGGATTGTACGTCCATCCTCATGTCCTCT
GCTCCTGCATCGTCCTCCTCGTCCGCGTCGGCCCTGCCTTCCCCTTTTAA
CGGCTGGCCCTCTTTGCAAAGGGCTGTGTCCGAAGCACAACACAAGCGCC
CCTCCGCCTCATCGAGTGCCCGCGCGAAGCATCATCGTCCTCCTCCATCT
TTTGAAGTTCAAGAACTGGGCCCGGGGCTCTTGACAATCTCCGATGTCTT
CACCACTGCGCAGTGCCGCCGTATGGTGGAGGCCGCAGAGGCCCGGGGCA
TGACTCCCACCAACCCTCGGAACCTACCTCCGCTCAAAGGACATGCTTTT
CGAAACAATGACCGTCTTTCGGTGCATGATGCTGCCTTTGCAGCGGAGCT
CTTCGACTTCCTGAGCCCTGCCTTGCACACGATCGTGCGTGTTGAGGACC
GGGCCCAGCCCTGTGGCCTCTCCCCCCATTTTCGTTTCTACCGGTACCGA
AAAGGTAAGGGATGGGAAAAGTAAAGGCAGGAATGAGAGGAGGGGAGTCC
TCTCAAGGCGCATCGAGGAAGAGGATGTGTACGAGCTTCTCGACCTTTTG
CCACCAGCATGACCCCGTCGCGTCCCTCTGGCTGGCTCTTCAGGTGGCTG
TCACGTCATACTTCACTTTTCCTCGCTACTGACGCAATTTCTCCACATAC
CTGTGTAAGATGCCTGGTTTGGGCCTCACATCGATGAGACACAGCTGAGC
GGCGACGGGCAGATGGAGAGCGAGTTCACCATGCTCATCTATTTGACCGG
TGTAGATGATGATTGCCCCCTGGATCCGAAGCTAGGGCCCCTCAAAGGGG
GGGCGACGCGGTTCCATCACCATCGACATGCGGCACTCGACGTGGAGCCA
CGGACCGGCCTGGTGTGCTTGCACTGGCAGCTGCATAATTGTCTTCACGA
GGGGACACGGGTGTTAGGGGGGGTGAAGTGGCTGTTAAGGACAGACCTGT
ATTTTCCCCGACTCAGCAAAGTGGCGCGAATGGCGGCCTCCAAGCCGAAA
AGGACCGGGGAGGGAGGGGTAAAGGGTGGTAAAGGGAGCAAGGGAGGTGG
AAGAAGCTGTACGGAAAGCCTGCTTGCCGAAAAGAGTGAGAAGAAATCCC
AAAAATAATGAGGCCCTCGGTG

protein sequence of rna4791

>rna4791-protein ID=rna4791-protein|Name=rna4791|organism=Nannochloropsis gaditana|type=polypeptide|length=623bp
MPGLVVTVLSDSELETMGMREATDPPSRVHGVAYRIPDENVARVLDELDF
REKGGYTRAVVEVKPTTSSTGGTDKSGRQEVIRALLYTANADNPNFHHPS
TLEEAAHIVAWSRGPSGENREYLFEIEAYLRRAGAECPETFALTTRVEEV
LERGLDRRGSLDARFRRDLVVVSGTQARGGTEGIWAVWQRLRLHAWGSNQ
HGQLGKRAEAVGDGAFDLDMGVKTDKDDEWPLPQPTVVEVDVATTVSLQS
GSRAQAADEHRLLVRQLAAGGGHSAIVTGEDRLYLWGWNEAGQVGGSKYA
TLDGTHRVHVFPRRVAMVALGHAHTLVLEKDTGKLYGVGGNAAGEATGVV
MEQRKQCRAVGGGLVTLDGGSDPIRFSWCDAGVRHSAGVTRDDGRLVTWG
VGRSGACLPASVRGWAPVDGAKVRKVWCGWQHTVVLDDRGRVWTLGANKY
GQLGRRGSQNDGLPELVEWPEGAGREGEGVRVEEVACGWSHVLVKTHDGE
IWGWGRNTFGQLGSEAVAEPETIGRDYLPRPLLKDKDRLPHGVQVDKVTC
GSESSMLVGKDGSLWVCGWNEHGNLGVGDGKDRKSWTLVPGLSAGSGGGK
MLVACGGAHTLAMSREPSDTSVR

mRNA from alignment at CM002464.1:366956..369696+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4791 ID=rna4791|Name=rna4791|organism=Nannochloropsis gaditana|type=mRNA|length=2741bp|location=Sequence derived from alignment at CM002464.1:366956..369696+ (Nannochloropsis gaditana)
GCTTCTTTCAGTTTCCCTTTTCGGCCGCGATTGTCAAAGATGGCGCCACC
ATCGATTTCACTTTCACACAACCCCGCTCAAGTTACGACACGTATGCGTC
TTCACTCCCTCCGACGCGGCCAAAAGGCATACGTGTGCGAGGAATTTAGT
AATGATTCTTAATGTTTCTCCACCCAATGCAAAGGCCGTGACTCAGAAGT
ACCAAAACATCGCCTACTTTGTCCATTCGTCTATATTAGGGGGTCATGAG
CTCTGGTCAGACATATGTGCCTCGCATGACTTCATCTCCCACTCATCTCC
CTACACGAGCGATAATTCTTATGAAAAGACCATTTCTTGACGACCTAATG
CAACTTTATGATGCAAAACGCAGGAAAACATTATTACCATACGCTTTTTC
TGTCTTATATGGAGATCTATTCCATTCCTGTTGGCATACCTCCTCATATT
ACTGCGCTCGACAAGCGGCTCCGCTAAACCCTCAGCTACCTTTTTGGGCC
CCCGGTCACTTGGACGTAAcccccctccagcagctAAAACAAGCATAACA
AATATGCTGAGTGAGGTTTCATCCTCAACGACAGGTACGGAGCGCAAGTG
GGATGCCGTGCAAGGCGTTTGGGTCGGCTCCCGGGCCCTCGCAGACGAGG
CCAACGATGTGCCATCTCCTTTGTACATTTTTGGCTACGGATCACTCATG
TTCCGTCCTCAGGAATCGTTTGCGAGTTGCGAGAGAGTTGACGGCGTTGT
GAAGGGTTGGAAGCGAGTGTGGGCGCAACGAAGCTGCGACCACAGGGGGG
AACCGCACATGCCCGGTCTTGTAGTGACGGTACTAAGCGACTCCGAGCTG
GAGACAATGGGCATGCGGGAGGCGACGGATCCGCCATCACGCGTGCACGG
AGTGGCGTACCGAATCCCCGACGAAAACGTCGCGCGCGTGCTGGATGAGC
TGGATTTCAGGGAAAAGGGTGGCTATACTCGGGCCGTTGTGGAGGTCAAG
CCCACGACATCTTCAACCGGGGGCACGGATAAGAGCGGCAGACAAGAGGT
GATTAGGGCACTGCTTTACACTGCCAATGCAGACAACCCAAACTTCCACC
ATCCCAGTACGCTAGAAGAGGCAGCCCATATCGTGGCCTGGTCCCGAGGG
CCGTCGGGGGAAAATCGAGAGTACTTGTTTGAGATTGAGGCTTACCTGCG
TCGTGCGGGGGCCGAGTGCCCAGAGACCTTCGCTCTGACCACGCGTGTCG
AGGAAGTCTTGGAGAGAGGCTTGGACCGCCGGGGGAGTCTGGATGCACGC
TTTCGGCGCgacctggtggtggtgtCGGGGACCCAGGCCCGcggagggac
cgaggggaTATGGGCCGTTTGGCAGCGCTTGAGACTGCACGCGTGGGGTT
CGAACCAACACGGACAGCTGGgcaagagggcggaggcggtgggtgATGGA
GCATTTGACCTGGATATGGGCGTCAAGACCGACAAGGACGACGAATGGCC
GTTGCCGCAACCAACGgtcgtggaggtggatgtCGCCACCACGGTCTCGC
TTCAGAGTGGTTCGCGCGCCCAGGCCGCAGACGAACACCGCCTCCTGGTC
CGACAGCTCGCGGCCGGCGGGGGGCACAGTGCGATTGTGACAGGCGAGGA
CCGGCTGTACCTGTGGGGGTGGAATGAGGCTGGGCaggtaggagggagca
agTACGCGACTCTGGACGGCACGCACCGAGTCCACGTCTTCCCTCGCCGG
GTGGCCATGGTCGCCTTGGGCCACGCGCACACTTTGGTGTTGGAGAAGGA
CACGGGGAAGCTGTACGGAGTGGGGGGCAATGCGGCCGGGGAGGCGACAG
GCGTGGTCATGGAGCAACGCAAGCAGTGCCGCGCAGTGGGCGGTGGATTA
GTGACCTTGGACGGAGGTAGCGACCCGATTCGATTCAGTTGGTGCGATGC
GGGGGTCCGCCATTCTGCCGGGGTGACGAGGGATGATGGGCGCTTGGTCA
CCTGGGGCGTGGGCCGGTCGGGGGCTTGTTTGCCGGCCTCGGTGAGAGGC
TGGGCGCCCGTGGATGGCGCGAAGGTACGCAAGGTCTGGTGTGGGTGGCA
GCACACAGTAGTATTGGACGATAGAGGACGAGTTTGGACCTTGGGAGCGA
ATAAATACGGTCAGCTGGGGCGACGGGGCAGTCAAAACGACGGATTGCCT
GAGCTAGTGGAGTGGCCCGAGGGtgctggaagggagggagaaggagtgcg
ggtggaagaggtggcctGCGGTTGGTCGCATGTACTTGTCAAGACACACG
ATGGAGAGATCTGGGGCTGGGGCCGCAACACATTCGGGCAGTTGGGCTCG
GAGGCAGTTGCGGAGCCGGAGACCATCGGCAGAGACTACCTTCCGCGTCC
ACTCTTGAAAGACAAGGACCGGCTGCCTCATGGCGTGCAGGTCGACAAGG
TCACGTGCGGGTCCGAAAGCAGTATGTTGGTGGGAAAGGACGGCTCTTTG
TGGGTGTGTGGGTGGAATGAACATGGAAACTTGGGCGTGGGCGATGGAAA
GGACCGAAAATCGTGGACCCTGGTCCCGGGACTGTCGGCGGGCtcaggag
gcgggaaaatgCTGGTGGCGTGTGGGGGTGCGCACACCCTTGCCATGTCT
AGGGAGCCGTCCGACACCAGTGTGAGATGATGGAGCATAAATTGTGCGCA
ATTTCATAAATGCAGACCGATAAAAAAGGGGCATCAGACCG

Coding sequence (CDS) from alignment at CM002464.1:366956..369696+

>rna4791 ID=rna4791|Name=rna4791|organism=Nannochloropsis gaditana|type=CDS|length=1872bp|location=Sequence derived from alignment at CM002464.1:366956..369696+ (Nannochloropsis gaditana)
ATGCCCGGTCTTGTAGTGACGGTACTAAGCGACTCCGAGCTGGAGACAAT
GGGCATGCGGGAGGCGACGGATCCGCCATCACGCGTGCACGGAGTGGCGT
ACCGAATCCCCGACGAAAACGTCGCGCGCGTGCTGGATGAGCTGGATTTC
AGGGAAAAGGGTGGCTATACTCGGGCCGTTGTGGAGGTCAAGCCCACGAC
ATCTTCAACCGGGGGCACGGATAAGAGCGGCAGACAAGAGGTGATTAGGG
CACTGCTTTACACTGCCAATGCAGACAACCCAAACTTCCACCATCCCAGT
ACGCTAGAAGAGGCAGCCCATATCGTGGCCTGGTCCCGAGGGCCGTCGGG
GGAAAATCGAGAGTACTTGTTTGAGATTGAGGCTTACCTGCGTCGTGCGG
GGGCCGAGTGCCCAGAGACCTTCGCTCTGACCACGCGTGTCGAGGAAGTC
TTGGAGAGAGGCTTGGACCGCCGGGGGAGTCTGGATGCACGCTTTCGGCG
CgacctggtggtggtgtCGGGGACCCAGGCCCGcggagggaccgagggga
TATGGGCCGTTTGGCAGCGCTTGAGACTGCACGCGTGGGGTTCGAACCAA
CACGGACAGCTGGgcaagagggcggaggcggtgggtgATGGAGCATTTGA
CCTGGATATGGGCGTCAAGACCGACAAGGACGACGAATGGCCGTTGCCGC
AACCAACGgtcgtggaggtggatgtCGCCACCACGGTCTCGCTTCAGAGT
GGTTCGCGCGCCCAGGCCGCAGACGAACACCGCCTCCTGGTCCGACAGCT
CGCGGCCGGCGGGGGGCACAGTGCGATTGTGACAGGCGAGGACCGGCTGT
ACCTGTGGGGGTGGAATGAGGCTGGGCaggtaggagggagcaagTACGCG
ACTCTGGACGGCACGCACCGAGTCCACGTCTTCCCTCGCCGGGTGGCCAT
GGTCGCCTTGGGCCACGCGCACACTTTGGTGTTGGAGAAGGACACGGGGA
AGCTGTACGGAGTGGGGGGCAATGCGGCCGGGGAGGCGACAGGCGTGGTC
ATGGAGCAACGCAAGCAGTGCCGCGCAGTGGGCGGTGGATTAGTGACCTT
GGACGGAGGTAGCGACCCGATTCGATTCAGTTGGTGCGATGCGGGGGTCC
GCCATTCTGCCGGGGTGACGAGGGATGATGGGCGCTTGGTCACCTGGGGC
GTGGGCCGGTCGGGGGCTTGTTTGCCGGCCTCGGTGAGAGGCTGGGCGCC
CGTGGATGGCGCGAAGGTACGCAAGGTCTGGTGTGGGTGGCAGCACACAG
TAGTATTGGACGATAGAGGACGAGTTTGGACCTTGGGAGCGAATAAATAC
GGTCAGCTGGGGCGACGGGGCAGTCAAAACGACGGATTGCCTGAGCTAGT
GGAGTGGCCCGAGGGtgctggaagggagggagaaggagtgcgggtggaag
aggtggcctGCGGTTGGTCGCATGTACTTGTCAAGACACACGATGGAGAG
ATCTGGGGCTGGGGCCGCAACACATTCGGGCAGTTGGGCTCGGAGGCAGT
TGCGGAGCCGGAGACCATCGGCAGAGACTACCTTCCGCGTCCACTCTTGA
AAGACAAGGACCGGCTGCCTCATGGCGTGCAGGTCGACAAGGTCACGTGC
GGGTCCGAAAGCAGTATGTTGGTGGGAAAGGACGGCTCTTTGTGGGTGTG
TGGGTGGAATGAACATGGAAACTTGGGCGTGGGCGATGGAAAGGACCGAA
AATCGTGGACCCTGGTCCCGGGACTGTCGGCGGGCtcaggaggcgggaaa
atgCTGGTGGCGTGTGGGGGTGCGCACACCCTTGCCATGTCTAGGGAGCC
GTCCGACACCAGTGTGAGATGA

Synonyms

Publications