|
|
Properties
| Property Name | Value |
|---|
| Product | Uncharacterized protein family UPF0272 |
| Orig transcript id | gnl|cribi|Naga_100090g15.8850.mrna |
| Orig protein id | gnl|cribi|Naga_100090g15.8850 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1202565..1204582 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna479 ID=rna479|Name=rna479|organism=Nannochloropsis gaditana|type=mRNA|length=957bp
ATGCTGACGCGGGCCGTCCACCTGTTCGAAAAGCATTTCGGCGGGCGAAT
ACAAGATCTTATACGACAGAAGCCTATCATCACGGCAACAAATTTGAAAC
GGGAGCATTTGGAGGAGCTGCTCGCCCATCGTACTTGCTGTGTGCATATT
CAAGGATTCTATCCCCCGGAAGCCGCGAAAGGAATAGCGCAACGCCTAAC
TAGAGATCCCTCACGACAGCTGGAATGGCTTATCAGCAATCCCCAAAAGG
GCTTAGAGAGCTCCGATGTCCGCACAATTGGCTCTCAACCTTACAACATG
GTGGCATCCTTACGTGACAAAAAGGCCGAAAAGGCGTACTTTGACGGGGC
TTTGGCATGCATGCGTGAGCTTCGAGAAGGCATTAGCTCGAGGGATGCAG
GACTTGCGGGAGAAGGTGCTGAGCATGCATCGACCCTGCCTGTGCTTGGG
CCACTCGACAAGCTTCGACTGGAGCTCGACGAGATCTTTCCCCAAGGCGC
CACCGTGACGAAGCACCCCAAGGACGGGCGGCCTTTCGTGGCGGGGTTGG
CGCGGGTCATGCAGGGGCCCACGAGGCATTTGGAGGGCTTTATCCACTGC
GACGACATCCATCCTCTCTCTCCAGACGAAGGCCTTTTCAGCGCCAATCT
TTACCTCCAATTGCCAGGTACTGGTGGCGGTGAACTTCTCATCTATGACT
TAGAAGTGCGTTCGCGCTTCGAATTTTACCAAAATGCTAGCACGCTTGCT
CTTCTCACCACCGCCGGAGAAGCTGGCCAAGATATTCTGAGAGCTCGATT
GCCAAAACCCAAGATGATCAAGCCAGTAGCAGGAGATCTGATTTTAATAT
GTGCGCAGCGCCCGCATGCCGTGGCGGGCTTTCCCCTGGGCACGCGCGTA
AGCATCCAGTCGTTCATATCCCACAAAAAAGGAAAACCGCTGCAGCTCGA
CAATTGA back to topprotein sequence of rna479 >rna479-protein ID=rna479-protein|Name=rna479|organism=Nannochloropsis gaditana|type=polypeptide|length=597bp
MSTRVAFLDCKCGVAGDMLLGALIDAGASREKLVDGLRSIHALAEEWELE
TEKVVRSKGRIAATLARVKSIYGHEEIPVDTQRGQSAASDENKTGGSGCH
AHHSHEHHSHAHHEHHHRPHRNLEIIREMIMNADGLPVSVRQQSVAVFTA
LAEAEAATHGVAVDKIHFHEVGAVDSIIDTVGTVYALHLLGVQEVHASAL
PYGEGFTGETAHGILPVPTPATLRLMLGMPMLPGPRGAAGELVTPTGASL
VKVLAAGRMGQPPVFVPDLLGVGAGSKDFPGHANVVRVLVGDRPLSSEEG
GTGDLGVVRASRPVWEAGNGGEDGVLAHAQRLRPSFHPPAGYLSEKGEPV
QPMTVPSPLHPPTEQLPIPAPPASAWSSGGWEERHLCELEANLDDMTPET
ASFALERLLAQPGCADVWYTPAVMKKGRPGLTLHLLCEPSAAPALLRCIF
LETPTLGVRAHTVARLALERDFVLVPTRYGQVRAKVGRMGGVVVNVKPEY
EDCRGAAMALGLPLRAVVDEATRVARGQVEGGGEGGEGEGRGKEKREMEE
ATRLARRMMGRPLCRWTFDRLGKVWERSSLETRKSGRERMPSLPPGS back to topmRNA from alignment at CM002455.1:1202565..1204582+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna479 ID=rna479|Name=rna479|organism=Nannochloropsis gaditana|type=mRNA|length=2018bp|location=Sequence derived from alignment at CM002455.1:1202565..1204582+ (Nannochloropsis gaditana)
gggtTCCTTCTGTCGCGAAAAGACCAACACAACAGTCAAcccgcctttcc
ttttccacaGCGAACAAATCACAGAGCttaagaagaagaagagatgaGCA
CGAGGGTGGCATTCTTGGACTGCAAATGCGGCGTTGCGGGTGACATGCTT
TTGGGTGCTTTGATAGATGCGGTGAGTGACGGGCTGAAGTGCAACTTGAG
ATGGAATGTTCCGCAAGCACCTTgacctttcctccacctcttctcgCGGA
ACTCGTCCGCGTTTGATGTTTCAGGGTGCTTCGCGTGAGAAACTTGTCGA
CGGGTTGAGAAGCATTCATGCGTTGGCAGAGGAATGGGAATTGGAAACGG
AGAAAGTGGTCAGGAGCAAAGGACGCATTGCTGCAACGCTCGCCCGGGTC
AAGTCCATCTATGGCCACGAAGAGATTCCTGTTGACACGCAGAGGGGGCA
ATCAGCCGCGTCAGATGAAAATAAAACAGGAGGCAGTGGTTGTCATGCGC
ACCACTCTCATGAGCATCACAGCCATGCCCACCACGAGCATCATCACCGC
CCGCATCGCAACCTGGAGATCATCCGAGAAATGATTATGAACGCCGATGG
CCTGCCGGTATCAGTGCGTCAGCAGAGCGTGGCTGTTTTTACGGCCTTGG
CGGAAGCGGAAGCCGCCACGCACGGTGTGGCGGTGGACAAGATCCACTTC
CATGAAGTGGGGGCAGTGGACAGCATCATTGACACGGTCGGCACGGTGTA
CGCCTTGCACCTGCTGGGCGTCCAGGAAGTGCACGCCTCCGCCTTACCCT
ACGGGGAGGGATTCACGGGCGAGACCGCGCATGGCATTTTGCCTGTCCCC
ACCCCAGCCACCCTGCGTCTCATGCTGGGCATGCCCATGCTCCCCGGGCC
CCGGGGCGCCGCGGGAGAACTCGTGACGCCCACAGGGGCCTCTTTGGTCA
AGGTGCTGGCCGCGGGTCGCATGGGCCAGCCGCCGGTCTTCGTCCCCGAC
CTCTTGGGGGTaggggcggggagcaagGATTTCCCCGGCCACGCGAACGT
GGTCCGTGTCCTGGTCGGGGACCGGCCCCTctcgagcgaggagggaggga
cgggggaccTGGGGGTGGTTCGGGCGTCGAGGCCTGTGTGGGAAGCCGGG
aacgggggcgaggacggcgtgCTCGCCCATGCCCAGCGGcttcgtccctc
cttccatcccccggCGGGCTACCTGTCCGAGAAGGGCGAGCCGGTGCAGC
CCATGActgtgccctcccccctccaccctcccaccgAACAACTCCCgatc
cccgcccctcctgcgtCCGCCTGGTCCTCgggcgggtgggaagagCGGCA
TTTGTGCGAGTTGGAAGCCAACTTGGACGACATGACCCCCGAAACTGCAA
GCTTTGCCTTGGAGAGGCTGTTGGCCCAACCGGGTTGTGCAGACGTCTGG
TACACGCCCGCCGTGATgaaaaaggggaggccggggctgACCTTGCACCT
GCTCTGCGAGCCTTCCGCGGCCCCGGCCTTGCTCCGCTGCATCTTTTTGG
AGACTCCCACCCTGGGTGTCCGGGCCCATACTGTCGCGCGCTTGGCTCTG
GAACGGGACTTCGTCCTGGTCCCCACCCGATACGGTCAAGTTCGGGCGAA
GGTGGGCcggatgggaggggtggtggtgaacGTGAAGCCCGAGTACGAGG
ACTGCCGCGgcgcggccatggccttgggcCTGCCTTtgcgggcggtggtg
gacgaggctACCCGGGTGGCGAgggggcaggtggagggagggggggaggg
aggggagggggaggggagggggaaggagaaaagggagatggaagaggcga
CGAGGctggcaaggaggatgatgggGCGACCGTTGTGTAGATGGACCTTT
GATCGTTTGGGAAAGGTTTGGGAGAGGAGCTCGCTAGagacaaggaagag
cggaAGAGAAcggatgccctccctcccaccaggaaGTTAAGGCACCCACA
TTTTAAGCGTAGCAGATG back to topCoding sequence (CDS) from alignment at CM002455.1:1202565..1204582+ >rna479 ID=rna479|Name=rna479|organism=Nannochloropsis gaditana|type=CDS|length=3588bp|location=Sequence derived from alignment at CM002455.1:1202565..1204582+ (Nannochloropsis gaditana)
atgaGCACGAGGGTGGCATTCTTGGACTGCAAATGCGGCGTTGCGGGTGA
CATGCTTTTGGGTGCTTTGATAGATGCGGGTGCTTCGCGTGAGAAACTTG
TCGACGGGTTGAGAAGCATTCATGCGTTGGCAGAGGAATGGGAATTGGAA
ACGGAGAAAGTGGTCAGGAGCAAAGGACGCATTGCTGCAACGCTCGCCCG
GGTCAAGTCCATCTATGGCCACGAAGAGATTCCTGTTGACACGCAGAGGG
GGCAATCAGCCGCGTCAGATGAAAATAAAACAGGAGGCAGTGGTTGTCAT
GCGCACCACTCTCATGAGCATCACAGCCATGCCCACCACGAGCATCATCA
CCGCCCGCATCGCAACCTGGAGATCATCCGAGAAATGATTATGAACGCCG
ATGGCCTGCCGGTATCAGTGCGTCAGCAGAGCGTGGCTGTTTTTACGGCC
TTGGCGGAAGCGGAAGCCGCCACGCACGGTGTGGCGGTGGACAAGATCCA
CTTCCATGAAGTGGGGGCAGTGGACAGCATCATTGACACGGTCGGCACGG
TGTACGCCTTGCACCTGCTGGGCGTCCAGGAAGTGCACGCCTCCGCCTTA
CCCTACGGGGAGGGATTCACGGGCGAGACCGCGCATGGCATTTTGCCTGT
CCCCACCCCAGCCACCCTGCGTCTCATGCTGGGCATGCCCATGCTCCCCG
GGCCCCGGGGCGCCGCGGGAGAACTCGTGACGCCCACAGGGGCCTCTTTG
GTCAAGGTGCTGGCCGCGGGTCGCATGGGCCAGCCGCCGGTCTTCGTCCC
CGACCTCTTGGGGGTaggggcggggagcaagGATTTCCCCGGCCACGCGA
ACGTGGTCCGTGTCCTGGTCGGGGACCGGCCCCTctcgagcgaggaggga
gggacgggggaccTGGGGGTGGTTCGGGCGTCGAGGCCTGTGTGGGAAGC
CGGGaacgggggcgaggacggcgtgCTCGCCCATGCCCAGCGGcttcgtc
cctccttccatcccccggCGGGCTACCTGTCCGAGAAGGGCGAGCCGGTG
CAGCCCATGActgtgccctcccccctccaccctcccaccgAACAACTCCC
gatccccgcccctcctgcgtCCGCCTGGTCCTCgggcgggtgggaagagC
GGCATTTGTGCGAGTTGGAAGCCAACTTGGACGACATGACCCCCGAAACT
GCAAGCTTTGCCTTGGAGAGGCTGTTGGCCCAACCGGGTTGTGCAGACGT
CTGGTACACGCCCGCCGTGATgaaaaaggggaggccggggctgACCTTGC
ACCTGCTCTGCGAGCCTTCCGCGGCCCCGGCCTTGCTCCGCTGCATCTTT
TTGGAGACTCCCACCCTGGGTGTCCGGGCCCATACTGTCGCGCGCTTGGC
TCTGGAACGGGACTTCGTCCTGGTCCCCACCCGATACGGTCAAGTTCGGG
CGAAGGTGGGCcggatgggaggggtggtggtgaacGTGAAGCCCGAGTAC
GAGGACTGCCGCGgcgcggccatggccttgggcCTGCCTTtgcgggcggt
ggtggacgaggctACCCGGGTGGCGAgggggcaggtggagggaggggggg
agggaggggagggggaggggagggggaaggagaaaagggagatggaagag
gcgaCGAGGctggcaaggaggatgatgggGCGACCGTTGTGTAGATGGAC
CTTTGATCGTTTGGGAAAGGTTTGGGAGAGGAGCTCGCTAGagacaagga
agagcggaAGAGAAcggatgccctccctcccaccaggaaGTTAAatgaGC
ACGAGGGTGGCATTCTTGGACTGCAAATGCGGCGTTGCGGGTGACATGCT
TTTGGGTGCTTTGATAGATGCGGGTGCTTCGCGTGAGAAACTTGTCGACG
GGTTGAGAAGCATTCATGCGTTGGCAGAGGAATGGGAATTGGAAACGGAG
AAAGTGGTCAGGAGCAAAGGACGCATTGCTGCAACGCTCGCCCGGGTCAA
GTCCATCTATGGCCACGAAGAGATTCCTGTTGACACGCAGAGGGGGCAAT
CAGCCGCGTCAGATGAAAATAAAACAGGAGGCAGTGGTTGTCATGCGCAC
CACTCTCATGAGCATCACAGCCATGCCCACCACGAGCATCATCACCGCCC
GCATCGCAACCTGGAGATCATCCGAGAAATGATTATGAACGCCGATGGCC
TGCCGGTATCAGTGCGTCAGCAGAGCGTGGCTGTTTTTACGGCCTTGGCG
GAAGCGGAAGCCGCCACGCACGGTGTGGCGGTGGACAAGATCCACTTCCA
TGAAGTGGGGGCAGTGGACAGCATCATTGACACGGTCGGCACGGTGTACG
CCTTGCACCTGCTGGGCGTCCAGGAAGTGCACGCCTCCGCCTTACCCTAC
GGGGAGGGATTCACGGGCGAGACCGCGCATGGCATTTTGCCTGTCCCCAC
CCCAGCCACCCTGCGTCTCATGCTGGGCATGCCCATGCTCCCCGGGCCCC
GGGGCGCCGCGGGAGAACTCGTGACGCCCACAGGGGCCTCTTTGGTCAAG
GTGCTGGCCGCGGGTCGCATGGGCCAGCCGCCGGTCTTCGTCCCCGACCT
CTTGGGGGTaggggcggggagcaagGATTTCCCCGGCCACGCGAACGTGG
TCCGTGTCCTGGTCGGGGACCGGCCCCTctcgagcgaggagggagggacg
ggggaccTGGGGGTGGTTCGGGCGTCGAGGCCTGTGTGGGAAGCCGGGaa
cgggggcgaggacggcgtgCTCGCCCATGCCCAGCGGcttcgtccctcct
tccatcccccggCGGGCTACCTGTCCGAGAAGGGCGAGCCGGTGCAGCCC
ATGActgtgccctcccccctccaccctcccaccgAACAACTCCCgatccc
cgcccctcctgcgtCCGCCTGGTCCTCgggcgggtgggaagagCGGCATT
TGTGCGAGTTGGAAGCCAACTTGGACGACATGACCCCCGAAACTGCAAGC
TTTGCCTTGGAGAGGCTGTTGGCCCAACCGGGTTGTGCAGACGTCTGGTA
CACGCCCGCCGTGATgaaaaaggggaggccggggctgACCTTGCACCTGC
TCTGCGAGCCTTCCGCGGCCCCGGCCTTGCTCCGCTGCATCTTTTTGGAG
ACTCCCACCCTGGGTGTCCGGGCCCATACTGTCGCGCGCTTGGCTCTGGA
ACGGGACTTCGTCCTGGTCCCCACCCGATACGGTCAAGTTCGGGCGAAGG
TGGGCcggatgggaggggtggtggtgaacGTGAAGCCCGAGTACGAGGAC
TGCCGCGgcgcggccatggccttgggcCTGCCTTtgcgggcggtggtgga
cgaggctACCCGGGTGGCGAgggggcaggtggagggagggggggagggag
gggagggggaggggagggggaaggagaaaagggagatggaagaggcgaCG
AGGctggcaaggaggatgatgggGCGACCGTTGTGTAGATGGACCTTTGA
TCGTTTGGGAAAGGTTTGGGAGAGGAGCTCGCTAGagacaaggaagagcg
gaAGAGAAcggatgccctccctcccaccaggaaGTTAA back to top
|