rna4784, rna4784 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4784
Unique Name	rna4784
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2631
Alignment location	CM002464.1:341581..343241 +

Link to JBrowse

Properties


Property Name	Value
Product	CS-like domain protein
Orig transcript id	gnl\|cribi\|Naga_100048g22.10289.mrna
Orig protein id	gnl\|cribi\|Naga_100048g22.10289
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:341581..343241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g22	gene4621	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4784	rna4784-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25917.1	cds4772	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:341581..343241+
coding sequence from alignment at CM002464.1:341581..343241+

mRNA sequence

>rna4784 ID=rna4784|Name=rna4784|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp
ATGACGCAAAGAAACGGCAAGACTCCCCCCGTGGACCATACCGACATGCA
TGCAGGGTCAGGAGCTGCACCGGGTTCCATGCCTCTGCCGACAACGTCCT
CACATGCCCCTCCTGCGGGAGGGTCTGCGTCCCCCCCACGCCTCGGCGAC
AGGCGGGGCCCGCGGGATCTCTCCTCATATGTAGAGCCAGGCGTACGCGA
CGGGATGCTAGAAGAAAAAAAAAAGCTTAACAGACGGCGAGAGCCCATGC
TATATTTTCCAACTGTACCAGCGTGGAATTGGATGCGAAATTATCACGTA
CGCCGGGACCTTTTCTGGGATTTGCAGGCAGGCCTCGTTGTCGGGATCCT
CCTCATCCCTCAGGGTATGGCCTATGCCGTCCTGGCCAACCTCTCTCCCA
TCTACGGGCTCTACAGTGCGATTGCACCCAACATTGTCTACAGCTTTTTT
GGACCGTCCCGAGAAAGTGCTGTAGGGGCGATGGCGCTGGTCAGCATCAT
GGTCGGCAACATTATTTCTGGACAAACGTCCTCCCTTCGGAGCTCGGAGG
GTGATCACACGCAGCAAGCACCGTTGGAGGAGCGCGTCAATGTAGCCGTG
AAACTCGCCTTTGTGACAGGACTGATGCAAATAGGCCTGGGTGTGTTGAA
AATGGGGGAAATTGCCACTTACGTGTCGCACCCGGTCATGCAAGGGTTCT
GCTCAGGGGGCGAGATTCTCATCGCCATTTCCCAGCTCAAATACCTCTTC
GGCATCAAGATCCCCGCCTTCCCGTACGCTTATCAAACGCTCGAGTACTT
GTTCCAAAATATCCAAGATACGGAGCCATGGACCTTGCTGCTGGGCCTGG
TCACCTTCTTCCTCTTGTACGCCCTCTCCCGTTGGCGGAGGGCCGCCCGC
GCTAAGCTTGAGCGCCTGCGCTCTGCGGCTCTTTCCTCGGATTCCACGAC
CCCGCATGCCCACGTCTGGACAAAAAAAATGCTGCTCCTGTCCAACTTCG
GTCCCTTCGTAGCCATTGTAGCGACGGCTTTCGTCTCCTACGGGATGTCC
CGGCAGGGTGTCGCGCCCGCCATCATAGGCGAGGTTCCCCACGGCCTGCA
CACGTACCCGTCCTACGCGATCACGCTCACGGAGTTTCGCGATTTGGCCG
GTGCGTCCTTTCTTCTGGCGGTGATCTCGTTCATGCTCACCTACAGCGTG
TCCAAAAAATACGCGGGTTTGAACAACTACGTGGTGGAGCCGAACCAAGA
GCTTGTGGCGTTAGGGCTGGCCGATTTCGTCGGGAGCTTTTTTGGGGCTT
TTCCTGTCGCGGGCGGTTTCGCGCGCACGGCCGTAGCTGTGGAGGCGAAT
CAGAAGACACAGGCCTCCGCGTTGGTGGCAGTCAGCATTGTCTTGCTCGC
GGTCAATTTCTTGACCGGGAGCTTCCATTGGATTCCCCTGTGCACCCTAG
CGGCCATCGTACAAGTCGCCATTTGCGGCGTCGTGGACTTTCGGCCCTTC
CTCTACGCCTTCCGGGCCTCCAAAAGCGAGTTCGCCGTCATGTTTACCAC
CTTTGCCGTCACCTTAGGCCTCGGCATCGACAAGGGGATCATCGTCGGCG
TGGCTCTCAGCATCGTGGCCCTGGTACGCAAAACCTCCCACCCGCGCTTG
AAGGTACTGGGTGCCCTTCCAGGCCGCCGGCACGTCTTTCGCGACGTCAC
GCGCTACACCAACGCCGTGCAAGCGCCTGGGATTTGCATCGTTCGGATCG
ATGAAAGCCTCAACTTTGCCAGCTGTGCGAGCATCAAGGAGCAAATTTTG
AGCATAGCCAACGATCCCAACGTCGTGTTGCCCAAAGCTGCTTCGTCGCA
CCATCATGCTTTCGGACTTGGAGGCGGACAAGGGCATGTGGAAGGGAAGG
GCTCCGGAGAGCATGGCCTCCCGGCCCCTTTCCGATCGGGCAGCCCTCTC
CTCTCCGTGGTCCGGACGTTCAAGGTAGGCGGTGTTGCTGGAGGGGCGGA
GGGTGGAGCGGTGGAGTTGACGGCCAAGGAGGATGCGGTCGAAGAAGGCC
ACGTTCGTTCGCAGGCGGGAGACAACCAGGGTGCGCAGGATGATGAAGGG
ACCAGGAAAAAGTTGCCGAGAAGGCGCGGCGGGGGAACAGAGGGAGGAGC
GGACGGAGCACTGGTAGTATCGCAAGACTTGCAAGAGGAAATGGGGGAGG
AGGATCTGGAGGTTTCTCGAGTGCTCACAGCGGCTAAAGTATCGGCGCGG
CCCAAGCACATTGTCGTGGATTTCAGCGGCGTAAACCACATCGATCTCTC
AGGGATCAAGATGCTAGACGAGGTTGAGGAGGCCTTGCAAAAGGGCCTGC
CCCCGCAGATCCTCTACGTTGTGAATGTTAAGAGCACAGTCAGGGACCGG
CTGAAAAAGTCCCCTTTGTGGGATCGTGTAGGGGGCGAACTCTGCTTCCT
CTCGCTGCCCGCCTTGTTAGACCATTTAGTTGGAGACCGGTACTGGGCAG
GTAAACCCAGACATGGATGCACAGTTGAGAACACAGAGCGTCAATCTGGC
TCGAACACACCAGGAGGACAGGGTGGGGATGATGCATCTGAGACGGCGAT
ATGGGACGGATACACTGATTGGGTGATCTGA

protein sequence of rna4784

>rna4784-protein ID=rna4784-protein|Name=rna4784|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MARRPLFLVIGCAAFPTLQAFNMAYHPLASSRRGKSYSTAITRLQSQQRG
LLGDVVRPYDNSGGETDARLQFSTTRPDWLAELMLAKESQILRFPHELRR
FEWTAEDDEAVDEFLMRGKMQDAQAYFEEKKATSVPMYRQTLRYHWTQTE
TDVHVGVPVPKAVRGANLHLIVAEDAMQVALTDTPSFGVISGKFAGTIDP
STSGWQLVQKPDGSHAISMTLKKQSQPGTHALWYQLLQGEKLGACMLFKG
SAGQGRYHWSQDLDYMNVFIPIPEGVRGKSVQMTIDAAGRCMEVSHPQTS
ENPEVTGKQGDEGGRQRIGGELSGLVSPDECSWVIDEDGQGQRCVCLSLR
KRRREASESTWWPRCFKEEESVVPPEMQGSLDEGLAQAREERERMERALG
AEDGWGEEE

mRNA from alignment at CM002464.1:341581..343241+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4784 ID=rna4784|Name=rna4784|organism=Nannochloropsis gaditana|type=mRNA|length=1661bp|location=Sequence derived from alignment at CM002464.1:341581..343241+ (Nannochloropsis gaditana)
CTCCAGAATAAAAACAGTGAACAATAGTACAGCCGGGACTTAGGCGGATA
GTCCGGAAGTTGCCATGGCAAGAAGACCGCTTTTCCTCGTTATCGGCTGT
GCTGCGTTTCCCACTCTCCAGGCTTTCAACATGGCGTACCATCCTCTTGC
ATCGTCGCGTCGCGGTAAATCTTACAGCACGGCTATAACACGATTGCAGA
GTCAGCAACGAGGCTTGTTGGGGGATGTGGTCAGGCCATATGATAACTCT
GGTGGCGAGACTGATGCGAGGCTGCAATTTTCGAGTAAGTAGGGTTGAGA
ACTCGAAGTTAATGCTCCGAACAAAATCTTTTTTACTTGTTTAAGATATG
CTTGACATTATGGAAGTAAAGGGAAGCTAATCATGATATTTCACGGATAG
CGGGAGGTGAGACTGTGTGGTTGCTACCACTGATTTATGCTTGTTAAAAT
TTTCATCTATTGTCCACAGCCACGCGCCCTGACTGGTTGGCTGAGCTCAt
gctggccaaggagagTCAAATTCTGCGTTTTCCACACGAGCTCCGCCGGT
TTGAATGGAccgcggaggacgacgaagcagTTGACGAATTCTTGATGCGC
GGAAAGATGCAAGACGCACAGGCCTACtttgaagaaaagaaagcgacGAG
CGTCCCAATGTACCGCCAGACCTTAAGGTACCACTGGACACAAACCGAGA
CGGACGTGCACGTGGGTGTTCCAGTACCCAAAGCTGTCCGTGGAGCTAAT
TTGCATCTGATAGTAGCCGAAGATGCCATGCAAGTGGCTTTGACAGACAC
TCCTTCTTTCGGTGTGATCTCGGGTAAATTCGCCGGCACCATTGACCCGA
GCACCTCTGGATGGCAACTTGTGCAAAAGCCGGACGGCAGCCACGCCATA
TCGATGACTCTGAAGAAACAATCCCAGCCGGGCACGCATGCATTGTGGTA
TCAGTTGTTGCAAGGCGAGAAGTTGGGGGCATGCATGCTCTTCAAAGGCT
CGGCCGGCCAGGGACGTTACCACTGGTCACAGGACTTAGATTACATGAAT
GTTTTCATTCCCATCCCGGAGGGGGTGCGTGGAAAGTCGGTGCAGATGAC
GATTGACGCGGCGGGCCGGTGTATGGAAGTTAGCCACCCACAGACTTCCG
AGAACCCGGAGGTTacagggaagcagggagacgaagggggaagacaaagg
atCGGGGGGGAATTGTCTGGGTTGGTGAGTCCGGACGAATGCTCATGGGT
GATTGACGAGGACGGCCAAGGGCAGCGGTGTGTGTGCTTGAGCCTGCGAA
AACGCCGGCGGGAAGCGAGTGAGTCGACCTGGTGGCCTCGGTGtttcaag
gaggaggaaagtgtaGTGCCGCCTGAGATGCAAGGATCCCTGGATGAGGG
ATTGGCGCAggcaagagaggagagagaacgGATGGAGCGGGCATTGGGCG
CCGAGGACggatggggagaggaggaatgatCTCCAAGGCCTGGCTTGTTG
TCCACAGGTGTGAACTCTcgacctctctttctttttcttttaaTGACGTC
CCGACAGTTCTTTTTGTACAGCCAACTCTTTCTCGCCACAAGGTCATGCC
TTCCCAACGTTATTCAATTTGTACGCACTTCGTCCTTTTTTAATAGTCTT
ACGCCTTTTCC

Coding sequence (CDS) from alignment at CM002464.1:341581..343241+

>rna4784 ID=rna4784|Name=rna4784|organism=Nannochloropsis gaditana|type=CDS|length=2460bp|location=Sequence derived from alignment at CM002464.1:341581..343241+ (Nannochloropsis gaditana)
ATGGCAAGAAGACCGCTTTTCCTCGTTATCGGCTGTGCTGCGTTTCCCAC
TCTCCAGGCTTTCAACATGGCGTACCATCCTCTTGCATCGTCGCGTCGCG
GTAAATCTTACAGCACGGCTATAACACGATTGCAGAGTCAGCAACGAGGC
TTGTTGGGGGATGTGGTCAGGCCATATGATAACTCTGGTGGCGAGACTGA
TGCGAGGCTGCAATTTTCGACCACGCGCCCTGACTGGTTGGCTGAGCTCA
tgctggccaaggagagTCAAATTCTGCGTTTTCCACACGAGCTCCGCCGG
TTTGAATGGAccgcggaggacgacgaagcagTTGACGAATTCTTGATGCG
CGGAAAGATGCAAGACGCACAGGCCTACtttgaagaaaagaaagcgacGA
GCGTCCCAATGTACCGCCAGACCTTAAGGTACCACTGGACACAAACCGAG
ACGGACGTGCACGTGGGTGTTCCAGTACCCAAAGCTGTCCGTGGAGCTAA
TTTGCATCTGATAGTAGCCGAAGATGCCATGCAAGTGGCTTTGACAGACA
CTCCTTCTTTCGGTGTGATCTCGGGTAAATTCGCCGGCACCATTGACCCG
AGCACCTCTGGATGGCAACTTGTGCAAAAGCCGGACGGCAGCCACGCCAT
ATCGATGACTCTGAAGAAACAATCCCAGCCGGGCACGCATGCATTGTGGT
ATCAGTTGTTGCAAGGCGAGAAGTTGGGGGCATGCATGCTCTTCAAAGGC
TCGGCCGGCCAGGGACGTTACCACTGGTCACAGGACTTAGATTACATGAA
TGTTTTCATTCCCATCCCGGAGGGGGTGCGTGGAAAGTCGGTGCAGATGA
CGATTGACGCGGCGGGCCGGTGTATGGAAGTTAGCCACCCACAGACTTCC
GAGAACCCGGAGGTTacagggaagcagggagacgaagggggaagacaaag
gatCGGGGGGGAATTGTCTGGGTTGGTGAGTCCGGACGAATGCTCATGGG
TGATTGACGAGGACGGCCAAGGGCAGCGGTGTGTGTGCTTGAGCCTGCGA
AAACGCCGGCGGGAAGCGAGTGAGTCGACCTGGTGGCCTCGGTGtttcaa
ggaggaggaaagtgtaGTGCCGCCTGAGATGCAAGGATCCCTGGATGAGG
GATTGGCGCAggcaagagaggagagagaacgGATGGAGCGGGCATTGGGC
GCCGAGGACggatggggagaggaggaatgaATGGCAAGAAGACCGCTTTT
CCTCGTTATCGGCTGTGCTGCGTTTCCCACTCTCCAGGCTTTCAACATGG
CGTACCATCCTCTTGCATCGTCGCGTCGCGGTAAATCTTACAGCACGGCT
ATAACACGATTGCAGAGTCAGCAACGAGGCTTGTTGGGGGATGTGGTCAG
GCCATATGATAACTCTGGTGGCGAGACTGATGCGAGGCTGCAATTTTCGA
CCACGCGCCCTGACTGGTTGGCTGAGCTCAtgctggccaaggagagTCAA
ATTCTGCGTTTTCCACACGAGCTCCGCCGGTTTGAATGGAccgcggagga
cgacgaagcagTTGACGAATTCTTGATGCGCGGAAAGATGCAAGACGCAC
AGGCCTACtttgaagaaaagaaagcgacGAGCGTCCCAATGTACCGCCAG
ACCTTAAGGTACCACTGGACACAAACCGAGACGGACGTGCACGTGGGTGT
TCCAGTACCCAAAGCTGTCCGTGGAGCTAATTTGCATCTGATAGTAGCCG
AAGATGCCATGCAAGTGGCTTTGACAGACACTCCTTCTTTCGGTGTGATC
TCGGGTAAATTCGCCGGCACCATTGACCCGAGCACCTCTGGATGGCAACT
TGTGCAAAAGCCGGACGGCAGCCACGCCATATCGATGACTCTGAAGAAAC
AATCCCAGCCGGGCACGCATGCATTGTGGTATCAGTTGTTGCAAGGCGAG
AAGTTGGGGGCATGCATGCTCTTCAAAGGCTCGGCCGGCCAGGGACGTTA
CCACTGGTCACAGGACTTAGATTACATGAATGTTTTCATTCCCATCCCGG
AGGGGGTGCGTGGAAAGTCGGTGCAGATGACGATTGACGCGGCGGGCCGG
TGTATGGAAGTTAGCCACCCACAGACTTCCGAGAACCCGGAGGTTacagg
gaagcagggagacgaagggggaagacaaaggatCGGGGGGGAATTGTCTG
GGTTGGTGAGTCCGGACGAATGCTCATGGGTGATTGACGAGGACGGCCAA
GGGCAGCGGTGTGTGTGCTTGAGCCTGCGAAAACGCCGGCGGGAAGCGAG
TGAGTCGACCTGGTGGCCTCGGTGtttcaaggaggaggaaagtgtaGTGC
CGCCTGAGATGCAAGGATCCCTGGATGAGGGATTGGCGCAggcaagagag
gagagagaacgGATGGAGCGGGCATTGGGCGCCGAGGACggatggggaga
ggaggaatga

Synonyms

Publications