rna4781, rna4781 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4781
Unique Name	rna4781
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1090
Alignment location	CM002464.1:334439..335665 -

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Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100048g19.10276.mrna
Orig protein id	gnl\|cribi\|Naga_100048g19.10276
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:334439..335665 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g19	gene4618	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4781	rna4781-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25904.1	cds4769	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:334439..335665-
coding sequence from alignment at CM002464.1:334439..335665-

mRNA sequence

>rna4781 ID=rna4781|Name=rna4781|organism=Nannochloropsis gaditana|type=mRNA|length=1090bp
ACACCTTCACCGCGTGTTCGACTTATTTGATTGTATTGATTTTGTCTTTT
TATTGTCACATACTTTGGCTGCTTGTGAACTCAGCACGGTCTCTGTGGTC
AATCAGCGTCATGCTATCGTCTAGGACTGCACTGCCCAACCTAGGGTTGG
CAGCCTTTAACTCACACAACGAATGTTTCTAAAATAAACGCATGCTAACA
GGTTGGTAAGCGGAAGGGAGAGAGGATGTGGCCGGGCCGGGCGATGTCAA
GCCCCAACCGTACGGCCGCTGCGCCTCCGGCGTCGGGAAGCCAGCAGGAT
GAAATTATCGTGCCCCGGAATTTCAAGCTCTTGGAGGAGTTGGACCAGGC
CGAAAAAGGGCAAGACCCTACCATTTCCCTAGGCCTACAGAACCAGGAAG
ACATTTTTCTGGTCGCCTGGAACGGTTCCATCTTCGGCCCGCCGGGCACG
ACGTTCGAAGGCCGCTTGTTTGAACTTAAAATCGAATGCGGAGATCGATA
CCCCAATGAGCCTCCTTTCGTCCGATTTGTGAGTCGAGTGAACCTTCCGT
GCGTCGATCAGAGCACTGGGGTGGTCAACCCGTCAAAGCTCCACATTTTG
AGCCATTGGGACCGACATTTCACGATGGAGCGTGTCTTGAATGAACTGAG
AAGAGAGATGATGACCCAGGGCAGTCGACGGTTGCCCCAGCCTCCTGAGG
GGTCCCGATTTTAGGGTTATGGGTGGAGGGGATCGGAGCGTGAAAGGAGG
ATTTGGAGGGGCAGAAAAAGCTTATATGCTCGGGCGTCGAGTGGAATCGG
GCCGTGTCAATGACCGGCACGAGCCTCTACTCAGGAATCTGAGCGCCGCC
CACCAGACGAGGCGAAAGGCCGCCTCGTACCTTGGGATGGCTGGAAGGGT
CTATGGAAAGGGGTCAGTGGTGTGTCCGACGGATGGAAGGGGGCTTTCCA
GCGAAAGGAGAGAGGAGGAAACGCAGAGGCGCGCGGCGTATGCCCGGACG
CCGTGTAAGTAACAGGAATCAAAAAGTTCGAGCAGGGCCCGAGGTAAACA
CGAAAAAGAACAACCTACAAGCGACGCTAACTGCGCCCGG

protein sequence of rna4781

>rna4781-protein ID=rna4781-protein|Name=rna4781|organism=Nannochloropsis gaditana|type=polypeptide|length=312bp
MPTSSDGTVTQAPSTSNGSTKKRRGGKRKKNTGRPDDNPKHPAPGDPSSV
GSGSNRNRICNGNRRLLSYALSPAYWFALTVSMVAFMVLRRGSTRISGFS
QVTPGAAGSRDFKAKVSPNTAAEEISLDSSSNTRDEECISTKPNSFFSWS
FPKLEAMMTQFIESPIVFPEAPVTRFRRRALQEMQLNDEPLQDNPPRYVP
PGYAFPSQVLHSDIHLRAERERHRAVMRAVQPIMLNGREQDCVSPRCLRD
GTYPAFRKLERKMLKMLSPESLCVFILDWGRGEIEFEREAYLQARPQMAL
YPNVTSPQVIEK

mRNA from alignment at CM002464.1:334439..335665-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4781 ID=rna4781|Name=rna4781|organism=Nannochloropsis gaditana|type=mRNA|length=1227bp|location=Sequence derived from alignment at CM002464.1:334439..335665- (Nannochloropsis gaditana)
ATGCCGACGTCGTCTGACGGGACAGTTACTCAAGCACCTTCAACTTCAAA
TGGGAGTACAAAGAAGAGGCGGGGAGGGAAACGCAAGAAGAACACAGGGA
GACCAGACGATAATCCCAAGCATCCCGCTCCCGGAGACCCGTCATCAGTG
GGAAGTGGAAGCAATCGCAACCGAATATGCAACGGCAACAGAAGGTTGCT
CAGTTATGCTCTCTCACCAGCATATTGGTTCGCGTTAACGGTATCAATGG
TGGCATTTATGGTTCTGAGACGAGGTAGTACGAGAATTTCCGGCTTCAGT
CAAGTTACACCCGGAGCAGCGGGGAGCAGGGATTTCAAAGCAAAAGTCAG
CCCAAACACCGCAGCAGAGGAAATCAGTCTAGATTCTTCGTCAAACACAA
GAGATGAAGAATGTATAAGCACGAAGCCCAACTCATTTTTTTCATGGTCT
TTTCCAAAACTTGAGGTAGGAGATGTTGTAATACCCGTCTCCTGCATCGT
CTGTCTCCACCCTGATATCTGACTCACCATCTTATGTCAAACAAACAAAG
GCGATGATGACACAATTTATTGAGTCACCCATTGTGTTCCCCGAAGCACC
AGTAACACGCTTCAGGCGAAGGGTAAGTTTTAGAGAGCCTGTCTTCTAGA
GGTGGGAGATGTCCAAATAGTTGACGCACGGCTCATCTTCCCCGCAGGCT
TTACAAGAAATGCAGCTAAATGACGAGCCATTGCAAGACAACCCTCCACG
CTACGTACCCCCAGGGTATGCCTTTCCTTCTCAGGTGCTGCATTCCGACA
TACACCTGAGAGCAGAACGGGAACGGCATAGGGCAGTCATGCGCGCCGTC
CAACCCATTATGTTAAATGGTCGAGAACAAGGCAAGTCCTGGGTGTCAAT
TGCAGCAAAATTATAAAATGATACATTGTGATTCCGCAAAGATATTGAAT
TGACTTTCTCTCTCACATATATCCAATTTTGTCATTTTCACCTGCCTTTC
GGAGAGCAGATTGTGTAAGTCCTCGTTGCCTCAGAGATGGCACCTACCCT
GCTTTCCGAAAACTTGAACGGAAAATGTTGAAAATGTTAAGCCCTGAAAG
TTTATGCGTGTTCATCTTAGATTGGGGAAGAGGCGAAATAGAGTTTGAGA
GAGAAGCATACCTTCAAGCAAGACCTCAGATGGCCTTGTATCCCAACGTT
ACAAGCCCGCAGGTAATCGAAAAATAA

Coding sequence (CDS) from alignment at CM002464.1:334439..335665-

>rna4781 ID=rna4781|Name=rna4781|organism=Nannochloropsis gaditana|type=CDS|length=3756bp|location=Sequence derived from alignment at CM002464.1:334439..335665- (Nannochloropsis gaditana)
ATTGTGTAAGTCCTCGTTGCCTCAGAGATGGCACCTACCCTGCTTTCCGA
AAACTTGAACGGAAAATGTTGAAAATGTTAAGCCCTGAAAGTTTATGCGT
GTTCATCTTAGATTGGGGAAGAGGCGAAATAGAGTTTGAGAGAGAAGCAT
ACCTTCAAGCAAGACCTCAGATGGCCTTGTATCCCAACGTTACAAGCCCG
CAGGTAATCGAAAAATAAGCTTTACAAGAAATGCAGCTAAATGACGAGCC
ATTGCAAGACAACCCTCCACGCTACGTACCCCCAGGGTATGCCTTTCCTT
CTCAGGTGCTGCATTCCGACATACACCTGAGAGCAGAACGGGAACGGCAT
AGGGCAGTCATGCGCGCCGTCCAACCCATTATGTTAAATGGTCGAGAACA
AGGCGATGATGACACAATTTATTGAGTCACCCATTGTGTTCCCCGAAGCA
CCAGTAACACGCTTCAGGCGAAGGATGCCGACGTCGTCTGACGGGACAGT
TACTCAAGCACCTTCAACTTCAAATGGGAGTACAAAGAAGAGGCGGGGAG
GGAAACGCAAGAAGAACACAGGGAGACCAGACGATAATCCCAAGCATCCC
GCTCCCGGAGACCCGTCATCAGTGGGAAGTGGAAGCAATCGCAACCGAAT
ATGCAACGGCAACAGAAGGTTGCTCAGTTATGCTCTCTCACCAGCATATT
GGTTCGCGTTAACGGTATCAATGGTGGCATTTATGGTTCTGAGACGAGGT
AGTACGAGAATTTCCGGCTTCAGTCAAGTTACACCCGGAGCAGCGGGGAG
CAGGGATTTCAAAGCAAAAGTCAGCCCAAACACCGCAGCAGAGGAAATCA
GTCTAGATTCTTCGTCAAACACAAGAGATGAAGAATGTATAAGCACGAAG
CCCAACTCATTTTTTTCATGGTCTTTTCCAAAACTTGAGATTGTGTAAGT
CCTCGTTGCCTCAGAGATGGCACCTACCCTGCTTTCCGAAAACTTGAACG
GAAAATGTTGAAAATGTTAAGCCCTGAAAGTTTATGCGTGTTCATCTTAG
ATTGGGGAAGAGGCGAAATAGAGTTTGAGAGAGAAGCATACCTTCAAGCA
AGACCTCAGATGGCCTTGTATCCCAACGTTACAAGCCCGCAGGTAATCGA
AAAATAAGCTTTACAAGAAATGCAGCTAAATGACGAGCCATTGCAAGACA
ACCCTCCACGCTACGTACCCCCAGGGTATGCCTTTCCTTCTCAGGTGCTG
CATTCCGACATACACCTGAGAGCAGAACGGGAACGGCATAGGGCAGTCAT
GCGCGCCGTCCAACCCATTATGTTAAATGGTCGAGAACAAGGCGATGATG
ACACAATTTATTGAGTCACCCATTGTGTTCCCCGAAGCACCAGTAACACG
CTTCAGGCGAAGGATGCCGACGTCGTCTGACGGGACAGTTACTCAAGCAC
CTTCAACTTCAAATGGGAGTACAAAGAAGAGGCGGGGAGGGAAACGCAAG
AAGAACACAGGGAGACCAGACGATAATCCCAAGCATCCCGCTCCCGGAGA
CCCGTCATCAGTGGGAAGTGGAAGCAATCGCAACCGAATATGCAACGGCA
ACAGAAGGTTGCTCAGTTATGCTCTCTCACCAGCATATTGGTTCGCGTTA
ACGGTATCAATGGTGGCATTTATGGTTCTGAGACGAGGTAGTACGAGAAT
TTCCGGCTTCAGTCAAGTTACACCCGGAGCAGCGGGGAGCAGGGATTTCA
AAGCAAAAGTCAGCCCAAACACCGCAGCAGAGGAAATCAGTCTAGATTCT
TCGTCAAACACAAGAGATGAAGAATGTATAAGCACGAAGCCCAACTCATT
TTTTTCATGGTCTTTTCCAAAACTTGAGATTGTGTAAGTCCTCGTTGCCT
CAGAGATGGCACCTACCCTGCTTTCCGAAAACTTGAACGGAAAATGTTGA
AAATGTTAAGCCCTGAAAGTTTATGCGTGTTCATCTTAGATTGGGGAAGA
GGCGAAATAGAGTTTGAGAGAGAAGCATACCTTCAAGCAAGACCTCAGAT
GGCCTTGTATCCCAACGTTACAAGCCCGCAGGTAATCGAAAAATAAGCTT
TACAAGAAATGCAGCTAAATGACGAGCCATTGCAAGACAACCCTCCACGC
TACGTACCCCCAGGGTATGCCTTTCCTTCTCAGGTGCTGCATTCCGACAT
ACACCTGAGAGCAGAACGGGAACGGCATAGGGCAGTCATGCGCGCCGTCC
AACCCATTATGTTAAATGGTCGAGAACAAGGCGATGATGACACAATTTAT
TGAGTCACCCATTGTGTTCCCCGAAGCACCAGTAACACGCTTCAGGCGAA
GGATGCCGACGTCGTCTGACGGGACAGTTACTCAAGCACCTTCAACTTCA
AATGGGAGTACAAAGAAGAGGCGGGGAGGGAAACGCAAGAAGAACACAGG
GAGACCAGACGATAATCCCAAGCATCCCGCTCCCGGAGACCCGTCATCAG
TGGGAAGTGGAAGCAATCGCAACCGAATATGCAACGGCAACAGAAGGTTG
CTCAGTTATGCTCTCTCACCAGCATATTGGTTCGCGTTAACGGTATCAAT
GGTGGCATTTATGGTTCTGAGACGAGGTAGTACGAGAATTTCCGGCTTCA
GTCAAGTTACACCCGGAGCAGCGGGGAGCAGGGATTTCAAAGCAAAAGTC
AGCCCAAACACCGCAGCAGAGGAAATCAGTCTAGATTCTTCGTCAAACAC
AAGAGATGAAGAATGTATAAGCACGAAGCCCAACTCATTTTTTTCATGGT
CTTTTCCAAAACTTGAGATTGTGTAAGTCCTCGTTGCCTCAGAGATGGCA
CCTACCCTGCTTTCCGAAAACTTGAACGGAAAATGTTGAAAATGTTAAGC
CCTGAAAGTTTATGCGTGTTCATCTTAGATTGGGGAAGAGGCGAAATAGA
GTTTGAGAGAGAAGCATACCTTCAAGCAAGACCTCAGATGGCCTTGTATC
CCAACGTTACAAGCCCGCAGGTAATCGAAAAATAAGCTTTACAAGAAATG
CAGCTAAATGACGAGCCATTGCAAGACAACCCTCCACGCTACGTACCCCC
AGGGTATGCCTTTCCTTCTCAGGTGCTGCATTCCGACATACACCTGAGAG
CAGAACGGGAACGGCATAGGGCAGTCATGCGCGCCGTCCAACCCATTATG
TTAAATGGTCGAGAACAAGGCGATGATGACACAATTTATTGAGTCACCCA
TTGTGTTCCCCGAAGCACCAGTAACACGCTTCAGGCGAAGGATGCCGACG
TCGTCTGACGGGACAGTTACTCAAGCACCTTCAACTTCAAATGGGAGTAC
AAAGAAGAGGCGGGGAGGGAAACGCAAGAAGAACACAGGGAGACCAGACG
ATAATCCCAAGCATCCCGCTCCCGGAGACCCGTCATCAGTGGGAAGTGGA
AGCAATCGCAACCGAATATGCAACGGCAACAGAAGGTTGCTCAGTTATGC
TCTCTCACCAGCATATTGGTTCGCGTTAACGGTATCAATGGTGGCATTTA
TGGTTCTGAGACGAGGTAGTACGAGAATTTCCGGCTTCAGTCAAGTTACA
CCCGGAGCAGCGGGGAGCAGGGATTTCAAAGCAAAAGTCAGCCCAAACAC
CGCAGCAGAGGAAATCAGTCTAGATTCTTCGTCAAACACAAGAGATGAAG
AATGTATAAGCACGAAGCCCAACTCATTTTTTTCATGGTCTTTTCCAAAA
CTTGAG

Synonyms

Publications