rna4773, rna4773 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4773
Unique Name	rna4773
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2640
Alignment location	CM002464.1:315156..316525 -

Link to JBrowse

Properties


Property Name	Value
Product	periplasmic binding protein
Orig transcript id	gnl\|cribi\|Naga_100048g9.10279.mrna
Orig protein id	gnl\|cribi\|Naga_100048g9.10279
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:315156..316525 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100048g9	gene4610	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4773	rna4773-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25907.1	cds4761	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:315156..316525-
coding sequence from alignment at CM002464.1:315156..316525-

mRNA sequence

>rna4773 ID=rna4773|Name=rna4773|organism=Nannochloropsis gaditana|type=mRNA|length=2640bp
TCTGTCTGTTTCTTTCTATGCAAGAAATTTATTGTCCTAGGCTCTGTCCG
CGAGATTTTGGCGCGAAGCCTTGAGCGGCCCCCGAGCCACCCTTTCCTGT
CACGTTTTGCTAAAGTCAAGACGGTAAACACGCGCACCACAACAATGGCA
GACATGTAACATTTCATTGTTGGCGTTTGTACTGTTTATGCTGATCGCTG
CATTGGGGTGCGGCTGCTTCGCATATGTTTGCATGGAGTTGTTAAGCTCA
GTCGCTTTTCCTGGCCGGGAAGCGAGATCGAGATCTTCTTGCCCTTCTCT
CTCCCTGCCGGGATGCCACGAGTGCATAGAGCTGAGATGTTAGAGGCGAA
GAAGGTGTCAACATATACAAGTGCTTATATCGTGACATCATCGTGGTCAA
GGCGTGTTTTTAACCGCCGTGTCTGATATAGCATAGCTTCGATGATAACT
CCATCCCCGTGAAAATTGTTTCCGATGCATTCTGATAGAGCATTATATTT
TTACAAGCGCGGATGCCATGCATTGACTATCATTACTATGCACAGATATA
CGGGTGTTTGTAAGGAGGTATGCTGATAACGGCCTTTGTTCACAGGCGTA
CGGGCAAGGCTCGAAGCTGTACAGTTTTCTCTCACACACTACTTCCATCT
CACCCAAACTAATGCCGCACACCCAGTTCCTAACATGGCACCAGCCGCCC
AAATCGTCACAATGTTGGGCGCCACCTTGGCGTTGTGCAACGCCTTCGTC
CCGCCCGTTCCTTCTACTTCTCCCCGGTTTTCCAAGCTTGCGGCCCCAAG
GCGTCTAGCGGCTGCCGGTGCCGATGGTGCTTCCACAAAAGCCCCCCCCA
TGACCTTGACCGAGAAAATCCTCGCTCGTGCCGCAGGGAAGGAAAGTGTG
GCGCCGAACGATAACGTCTGGGTGCGAGCAGACAACCTGATGACCCACGA
CGTGTGCGGGCCGGGCACTTTCGGCCTCTTTAAGAAGGAGTTCGGGGCCA
ATGCCAAAGTCTGGGACCGGGAGCGTGTGCTCATCATTCCCGACCACTAC
ATTTTCACCTCGGACCCCCGGGCAAACCGCAACGTGGACATCCTTCGGGA
TTTTGTACAAGAACAGAACATCAAATACTTCTACGACATCACCGACCGAG
GAGAGTTCAAAGCCAACCCGGACTACAAGGGGGTCTGCCACGTGGCGCTC
GCGCAAGAAGGTCACACACGTCCTGGCGAAGTCTTGTTCGGGACCGACTC
TCACACCTGCAATGCGGGTGCCTTCGGGCAGTTCGCCACGGGCATCGGCA
ACACCGACGCCGCCTTCGTCCTCGGCACCGGAAAGCTCTTGTTGAAGGTG
CCCGCCTCCATGAAGTTCGAGCTGAACGGGGAGATCCCCGACTACCTGCT
CGCCAAGGACATGATCCTCCAGATCATTGGGGACATTGGAGTAGCCGGCG
CCACCTACCGGGCCATGGAATTTGGCGGGAACGCGATCCGGCAGCTGAGC
ATGGAGGAGCGACAGACCCTCTGCAACATGGCCATCGAAGCGGGCGGCAA
GAACGGGATCATCCCTGCCGACGAGGTGACCACCGCCTACGTTGACGCTC
GCAATGCGGGGTCTCGGCCCTACACCATCTTCGAGGCGGACCCTGACGCT
TCTTACTTCGCCAAGTACGCGTACGACCTGAGTAGTCTGGAGCCCGTGGT
GGCCAAGCCGCACTCGCCTGACAACCGGGCGCTGGCTCGAGAATGCCGGG
ACATCAAGATCGATCGCGTCTACATTGGGTCCTGCACGGGGGGAAAGACG
GAGGATTTCGTCGCGGCGGCCCGAATCTTGCAGCAGAACAAGGTGTCCGT
GCCTACCTTCTTGGTCCCGGCCACGCGCAGGGTCTATGATGATTTGTATT
CACTCACGCTGGGGGGAAGGACGCTGGCCCAGATCTTCAGGGACGCGGGA
TGCATTGATCCGGCGTCACCATCTTGCGCCGCCTGCTTGGGGGGTCCGGC
CGATACGTTCGCGCGCATGAACGAGCCTTTGTTGTGCGTGAGCACTACCA
ATAGAAATTTCCCCGGTCGCATGGGCCACAAGGACGCAGGCATCTTCCTG
GCGTCGCCCTACACGGCCGCAGCCAGCGCCGTCACCGGGTACGTGACGGA
CCCCCGGGAGGTGTTTGAATTTTCACAGACGCGGCAGCCGGCCGAGACCC
TGGCAACCAAGGCGCCCGCGAGCGTCTTCGCCAAAAAGTAGATGACAGGG
CTTGGAAGGGAGAAAAGGAGGGCGAAGCATGTAAAGAAGGTATCAGGGTG
TGCGGGGGGCTTGAATGACAGGAAAGGGCAGTGGGAATGAAACAGCGGGA
CAGGACGGACAACTGATAAGGGTGGCTGTAAGGAAGCTTCCCGCTGATGA
GGACTGATGGTTCCCGGGGATGGAGCAGCCCCCATGCAGGGAGTACCTGG
TAGCAGTGGAAAGGAAATAGCAAAATTCTGGCATTCTCCTTCTGCGTCTG
TAAATTGCCCTGTACGCTCTGCTCCTGGACCGCACCGGTCATCCCGGACT
TGTTTCACCTCCCAACACCCTCTACGTTCATCCAAACCACACTTTCCTCG
ACTCCATCGACTTGACCCCACACTTCCTCCCGTCCTCACG

protein sequence of rna4773

>rna4773-protein ID=rna4773-protein|Name=rna4773|organism=Nannochloropsis gaditana|type=polypeptide|length=350bp
MTECSVASAAASADTRPLRIASFLPAATEMLFSLGLGDNVVGITHECDYP
PEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAA
PTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLE
LGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWI
DPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSP
CGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVD
GLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEETGERSTREEA

mRNA from alignment at CM002464.1:315156..316525-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4773 ID=rna4773|Name=rna4773|organism=Nannochloropsis gaditana|type=mRNA|length=1370bp|location=Sequence derived from alignment at CM002464.1:315156..316525- (Nannochloropsis gaditana)
TGACAGATATCTATAGACATTCTCTAGTGTGGGAGCGGCAGTCACTTCAT
TATAAACCTGAAATATGACAGAATGCAGTGTCGCGAGCGCTGCTGCAAGT
GCCGATACACGACCCTTGCGGATTGCCTCTTTTTTGCCTGCCGCCACCGA
GATGCTTTTCTCCCTGGGCCTTGGGGATAATGTGGTTGGGATCACCCATG
AGTGTGACTATCCTCCTGAGGTGCGATGAATACCGTCCCTTCTGTGCTCC
TATGTGTGCGCATTGATGTTGAATCCACGCGTCCATCCTACTCCCCACAT
TACTTCCCCTTCAATTGCAGGCTAAAAAAAAGCCCGTTGTGGTAGAATGC
GTTTTAAATTTGGAAGGTTTATCTATGAAAGAGATCGACGAAGCCGTGTC
CGCCCGCCTTAAATCGGGAAAAAGCCTGTACAACGTCAACGAGGAGAAGC
TTAGGACTGCTGCTCCCACCCTGCTTGTGACGCAGAACTTGTGCCAAGTT
TGCGGTCCCAGCGGTAATGAGGTCACGCAAGTCCTAAAAACCCTTAAACC
ACCTCCGGAAATCGTCTGGCAGACGCCAAAGACCTTCGAGGAAGTTTTAG
AGGCGTATCTGGAACTGGGCAAGCGGACGGGCAAGGAGGAGGAGTCCAAA
GCGTGGGTGGAGGCATCGAGGAAGCGGGTTGCGGACATCAGGGGGAAGGT
GCAAATGCAGGTCGACGGACAGGGAAATAAGGGGCGAGTTCGGGTAGCAT
TCGTGGAGTGGATTGACCCGATCTTCGCGGGCGGGCACTGGGTAGGGGAG
ATGTTGGAGTGGGCCGGGGGGGAGGACGTGAACAGCCGGAAAGGGCGGGA
CTCGGTGCGCATTCCTTGGGAGGAGGTGATAGCCTGGGCGCCGGAGGTAA
TCATTGTCTCCCCTTGTGGGTTCGACCTGGAAAAATCCCGGGAGCAGGCC
CGCCTGCTCATGCAACGGGAGGGGTTCCACGCCCTGCCCGCTGCGAAGGC
GGACCGCGTCTACGCGGTGGATGCCAACGGGTATTTCGCCCGCCCCGGCA
TCCGGCTGGTGGACGGCTTGCTGTTGCTTGCGCATTTGATCCATGGGCCG
AAATCCTTCCCCTGGACCGGACCTGCGGATGCCTTTGCTCACGTGCCCGT
GGAGGGGGAAGGAGGAGGGAGGGAGGCGGAAGAGACAGGCGAGCGGAGCA
CGAGAGAGGAAGCGTGAGGACGGGAGGAAGTGTGGGGTCAAGTCGATGGA
GTCGAGGAAAGTGTGGTTTGGATGAACGTAGAGGGTGTTGGGAGGTGAAA
CAAGTCCGGGATGACCGGTGCGGTCCAGGAGCAGAGCGTACAGGGCAATT
TACAGACGCAGAAGGAGAAT

Coding sequence (CDS) from alignment at CM002464.1:315156..316525-

>rna4773 ID=rna4773|Name=rna4773|organism=Nannochloropsis gaditana|type=CDS|length=2106bp|location=Sequence derived from alignment at CM002464.1:315156..316525- (Nannochloropsis gaditana)
GCTAAAAAAAAGCCCGTTGTGGTAGAATGCGTTTTAAATTTGGAAGGTTT
ATCTATGAAAGAGATCGACGAAGCCGTGTCCGCCCGCCTTAAATCGGGAA
AAAGCCTGTACAACGTCAACGAGGAGAAGCTTAGGACTGCTGCTCCCACC
CTGCTTGTGACGCAGAACTTGTGCCAAGTTTGCGGTCCCAGCGGTAATGA
GGTCACGCAAGTCCTAAAAACCCTTAAACCACCTCCGGAAATCGTCTGGC
AGACGCCAAAGACCTTCGAGGAAGTTTTAGAGGCGTATCTGGAACTGGGC
AAGCGGACGGGCAAGGAGGAGGAGTCCAAAGCGTGGGTGGAGGCATCGAG
GAAGCGGGTTGCGGACATCAGGGGGAAGGTGCAAATGCAGGTCGACGGAC
AGGGAAATAAGGGGCGAGTTCGGGTAGCATTCGTGGAGTGGATTGACCCG
ATCTTCGCGGGCGGGCACTGGGTAGGGGAGATGTTGGAGTGGGCCGGGGG
GGAGGACGTGAACAGCCGGAAAGGGCGGGACTCGGTGCGCATTCCTTGGG
AGGAGGTGATAGCCTGGGCGCCGGAGGTAATCATTGTCTCCCCTTGTGGG
TTCGACCTGGAAAAATCCCGGGAGCAGGCCCGCCTGCTCATGCAACGGGA
GGGGTTCCACGCCCTGCCCGCTGCGAAGGCGGACCGCGTCTACGCGGTGG
ATGCCAACGGGTATTTCGCCCGCCCCGGCATCCGGCTGGTGGACGGCTTG
CTGTTGCTTGCGCATTTGATCCATGGGCCGAAATCCTTCCCCTGGACCGG
ACCTGCGGATGCCTTTGCTCACGTGCCCGTGGAGGGGGAAGGAGGAGGGA
GGGAGGCGGAAGAGACAGGCGAGCGGAGCACGAGAGAGGAAGCGTGAATG
ACAGAATGCAGTGTCGCGAGCGCTGCTGCAAGTGCCGATACACGACCCTT
GCGGATTGCCTCTTTTTTGCCTGCCGCCACCGAGATGCTTTTCTCCCTGG
GCCTTGGGGATAATGTGGTTGGGATCACCCATGAGTGTGACTATCCTCCT
GAGGCTAAAAAAAAGCCCGTTGTGGTAGAATGCGTTTTAAATTTGGAAGG
TTTATCTATGAAAGAGATCGACGAAGCCGTGTCCGCCCGCCTTAAATCGG
GAAAAAGCCTGTACAACGTCAACGAGGAGAAGCTTAGGACTGCTGCTCCC
ACCCTGCTTGTGACGCAGAACTTGTGCCAAGTTTGCGGTCCCAGCGGTAA
TGAGGTCACGCAAGTCCTAAAAACCCTTAAACCACCTCCGGAAATCGTCT
GGCAGACGCCAAAGACCTTCGAGGAAGTTTTAGAGGCGTATCTGGAACTG
GGCAAGCGGACGGGCAAGGAGGAGGAGTCCAAAGCGTGGGTGGAGGCATC
GAGGAAGCGGGTTGCGGACATCAGGGGGAAGGTGCAAATGCAGGTCGACG
GACAGGGAAATAAGGGGCGAGTTCGGGTAGCATTCGTGGAGTGGATTGAC
CCGATCTTCGCGGGCGGGCACTGGGTAGGGGAGATGTTGGAGTGGGCCGG
GGGGGAGGACGTGAACAGCCGGAAAGGGCGGGACTCGGTGCGCATTCCTT
GGGAGGAGGTGATAGCCTGGGCGCCGGAGGTAATCATTGTCTCCCCTTGT
GGGTTCGACCTGGAAAAATCCCGGGAGCAGGCCCGCCTGCTCATGCAACG
GGAGGGGTTCCACGCCCTGCCCGCTGCGAAGGCGGACCGCGTCTACGCGG
TGGATGCCAACGGGTATTTCGCCCGCCCCGGCATCCGGCTGGTGGACGGC
TTGCTGTTGCTTGCGCATTTGATCCATGGGCCGAAATCCTTCCCCTGGAC
CGGACCTGCGGATGCCTTTGCTCACGTGCCCGTGGAGGGGGAAGGAGGAG
GGAGGGAGGCGGAAGAGACAGGCGAGCGGAGCACGAGAGAGGAAGCGTGA
ATGACAGAATGCAGTGTCGCGAGCGCTGCTGCAAGTGCCGATACACGACC
CTTGCGGATTGCCTCTTTTTTGCCTGCCGCCACCGAGATGCTTTTCTCCC
TGGGCCTTGGGGATAATGTGGTTGGGATCACCCATGAGTGTGACTATCCT
CCTGAG

Synonyms

Publications