EWM25907.1, cds4761 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|585107776|gb|EWM25907.1| (periplasmic binding protein [Nannochloropsis gaditana]) HSP 1 Score: 712.99 bits (1839), Expect = 0.000e+0 Identity = 350/350 (100.00%), Postives = 350/350 (100.00%), Query Frame = 0
Query: 1 MTECSVASAAASADTRPLRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEETGERSTREEA 350
MTECSVASAAASADTRPLRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEETGERSTREEA
Sbjct: 1 MTECSVASAAASADTRPLRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHVPVEGEGGGREAEETGERSTREEA 350
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1119936237|ref|WP_072817977.1| (cobalamin-binding protein [Bradyrhizobium erythrophlei] >gi|1109650555|emb|SHN72543.1| iron complex transport system substrate-binding protein [Bradyrhizobium erythrophlei]) HSP 1 Score: 317.005 bits (811), Expect = 5.000e-104 Identity = 155/306 (50.65%), Postives = 211/306 (68.95%), Query Frame = 0
Query: 19 RIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAF 324
RI SFLP+ATEM +LGL D ++GITHECDYPP+ KPVVV VL +E +S EID AV+ RL+ G+SLY V E ++ AP L++TQ+LCQVC PSGNE++Q+L +L P+++W TPK+ E++ + ELG+ TG+ E ++ + + R+A I + V R RV +EW+DP++ GHWV EM+ AGG D R+G DSVRI W++V+ W PEV+IV PCGFDLEK+ ++A+ L G+ LPA + VYAVDAN YFARPG R+++G LLAHL+H P+ F W GPA+AF
Sbjct: 6 RIVSFLPSATEMACALGLSDQLLGITHECDYPPQIMGKPVVVRNVLPIESMSQAEIDVAVTQRLRDGQSLYRVEEALMQDIAPDLILTQDLCQVCAPSGNEISQLLTSLPSKPQVLWLTPKSLEQIFDNLRELGEATGRSEMAETLIADGQARLAKIESVTRALV------SRPRVFCMEWMDPVYCCGHWVPEMVRMAGGLDKLGREGADSVRIRWDDVLEWKPEVLIVMPCGFDLEKTFKEAQRLTAYPGWDDLPAVRNGCVYAVDANSYFARPGPRVIEGTELLAHLLH-PELFEWRGPANAF 304
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1160706454|ref|WP_079566386.1| (cobalamin-binding protein [Bradyrhizobium erythrophlei] >gi|1109609264|emb|SHG48566.1| iron complex transport system substrate-binding protein [Bradyrhizobium erythrophlei]) HSP 1 Score: 312.768 bits (800), Expect = 2.607e-102 Identity = 159/306 (51.96%), Postives = 207/306 (67.65%), Query Frame = 0
Query: 19 RIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAF 324
RI SFLP+ATEM+ +LGLGD ++G+THECDYPPE K VVV VL +E +S EID AV+ RL+ G SLY V+E +R AP L++TQ LCQVC PSGNEV+Q+LK L P+I+W TPK+ E++ + +LG+ TG+ ++ + R R+ I + + R RV +EW+DP++ GHWV EM+ AGG D R+G DSVRIPW++V+ W PEV+IV PCGF LEK+ +QAR+L G+ LPA RVYAVDAN YFARPG R+V+G LLAHL+H P F W GP AF
Sbjct: 6 RIVSFLPSATEMVCALGLGDRLLGVTHECDYPPEIAGKTVVVRNVLPIETMSQPEIDSAVTQRLRDGLSLYRVDETLMREIAPDLILTQELCQVCAPSGNEVSQLLKVLPSQPQILWLTPKSLEQIFDNLRDLGEATGRSHIAENLIAEGRARLEKI------EAAARAAPSRPRVFCMEWMDPVYCCGHWVPEMVRIAGGIDGLGREGTDSVRIPWQDVLQWKPEVLIVMPCGFGLEKAADQARMLASYPGWADLPAVGDGRVYAVDANAYFARPGPRVVEGTELLAHLLH-PGLFEWKGPPGAF 304
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1101078204|gb|OIO38651.1| (hypothetical protein AUJ72_02145 [Candidatus Omnitrophica bacterium CG1_02_46_14]) HSP 1 Score: 311.227 bits (796), Expect = 8.453e-102 Identity = 152/307 (49.51%), Postives = 213/307 (69.38%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAF 324
+RI SFLP+ATE++ SLGL D +VGITHEC+YPPEA+ KP+VV + +EG++ +EIDE VS L+SG +LY VNE LR P +++TQ+LCQVC PSGNE++ VLK+L P+I+ TPK + E L +G GK + + +E + RV +R + + + + RV +EW DP++ GGHW+ E+ E AGG D +R+GRDSVRI W EV WAPEV+I+SPCG++++ + ++A+ L + ++ LPA K ++VYAVDA YFARPG R+VDGL LLAHLIH P+ F W GP +A+
Sbjct: 1 MRIVSFLPSATEIVCSLGLADELVGITHECNYPPEAQGKPIVVRNEIKMEGMTDREIDETVSRVLRSGGTLYRVNESLLRELDPDIIMTQDLCQVCAPSGNEISVVLKSLPRKPQILRLTPKNLSGIFENILTVGTAAGKTDVANKNIEVLKVRVEFVRN------EAKKIRKKPRVFLMEWFDPLYCGGHWIQELTEIAGGCDALARQGRDSVRISWREVKDWAPEVLILSPCGYNVKDAVKRAKDLPREPVWNELPAVKMNQVYAVDAQSYFARPGPRIVDGLELLAHLIH-PEEFDWQGPQNAY 300
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1088854513|emb|SDY87197.1| (iron complex transport system substrate-binding protein [Nitrosomonas sp. Nm33]) HSP 1 Score: 305.449 bits (781), Expect = 9.764e-99 Identity = 151/318 (47.48%), Postives = 208/318 (65.41%), Query Frame = 0
Query: 19 RIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQ---------ARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHV 327
RI SFLP+ATEM+ +LGL D++VGITHEC+YP K+KP+VV VL +E +S EID AV+ RL+ G+SLY ++EE L + AP L++TQNLCQVC PSGNEV+QVLK L P+I+W TP++ E+ ++ +L G+ E+ + + R R+ ++ K R RV +EW+DP++A GHWV EM++ AGG D G +SVR+ WE + WAPEV+++ PCGF+L+++ +Q + R F LPA + +RV+AVDAN +FARPG R+VDG LLAHL H P F W GP DAF V
Sbjct: 3 RIVSFLPSATEMVCALGLSDSLVGITHECNYPELVKRKPIVVRNVLPVETMSQSEIDRAVAERLRDGQSLYQIDEELLASLAPDLILTQNLCQVCAPSGNEVSQVLKALPHEPQILWMTPQSLSEIFDSLRDLDAAVGQTEKVEELIADCRARLEKLKSKTSRLA------YRPRVFCMEWLDPVYACGHWVPEMVKIAGGMDEIGSDGGESVRVAWERLAEWAPEVLVMMPCGFNLQQTMKQIWQHFGPYSSFAAENRAAFFNLPAVRDNRVFAVDANSFFARPGPRVVDGTELLAHLFH-PNEFSWDGPTDAFQQV 313
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|952340500|gb|KRT62957.1| (periplasmic binding protein, iron complex transport system substrate-binding protein [Candidatus Dadabacteria bacterium CSP1-2]) HSP 1 Score: 280.026 bits (715), Expect = 1.789e-89 Identity = 135/310 (43.55%), Postives = 205/310 (66.13%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHV 327
+RI SFLP+ATE++++LGLGDN+VG+THECDYPPEA+ KP V+ ++N E L+ EID+AVS K+GKS Y V+ E LR P +++TQ LC VC SGNEV +V+K L P+I+ P T +E+L L +G+ T ++E+S+ V R R+A I+ + + K R RV +EW+DP + GHWV EM+ AGG+ + G+ S ++ W+E+ +AP+VI++ PCGF++E++ + +L E +H +PA + VY VDAN YF+RPG R++DGL +LA ++H P+ + P D+ ++
Sbjct: 1 MRICSFLPSATEIVYALGLGDNLVGVTHECDYPPEARSKPRVIASLINPEDLTSYEIDKAVSENYKAGKSTYIVDVETLRRTNPDIIITQGLCDVCAVSGNEVKEVVKVLGHKPQIISLEPNTLDEILNTILLVGEATERKEQSEYLVNNLRSRIAAIKSLLGEE------KDRPRVFCMEWLDPPYVAGHWVPEMVRIAGGDYGFGKVGKPSFKVSWDEIFDFAPQVIVLMPCGFNIERTLREVEILTSNEYWHRIPAVRKGHVYLVDANSYFSRPGPRILDGLKILARILH-PELCSFEIPPDSVLNL 303
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|374852949|dbj|BAL55870.1| (periplasmic solute binding protein [uncultured Acetothermia bacterium] >gi|374854221|dbj|BAL57109.1| periplasmic solute binding protein [uncultured Acetothermia bacterium] >gi|374855963|dbj|BAL58818.1| periplasmic binding protein [Candidatus Acetothermus autotrophicum]) HSP 1 Score: 251.906 bits (642), Expect = 1.834e-78 Identity = 126/307 (41.04%), Postives = 196/307 (63.84%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAF 324
++I S LP+ATE+++ LGLGD +VG++H+CD+PP+ KKP + + V++ E + EID V RL SG S+Y+++ E L+ P L++TQ LC+VC PS ++V Q +K L P+IV P T E++L+ L +G+ TG+E+ ++ V R+R+ IR K + R RV +EW++PI GGHWV +M+E+AGGED G+ S WEE++ + PE+I++ PCGF +E++ + +L + G+ L A K +V+ V+A+ YF RPG R+V GL +LA +IH P+ F P D+F
Sbjct: 1 MKIISLLPSATEIVYELGLGDCLVGVSHDCDWPPDVLKKPKLSQAVVHSE-MPSAEIDAIVRERLHSGLSVYHIDAELLQKLNPDLILTQELCEVCAPSFDDVRQAVKLLHGQPKIVSLEPHTIEDILDNILTVGEVTGREDRARTLVAQLRRRIERIRAKTETLAH------RPRVCCIEWLEPIMIGGHWVPQMVEYAGGEDWLGELGQPSRYADWEEILHYNPEIIVLMPCGFSIERTLREMDVLTELAGWEELTAVKEGQVFIVEASAYFNRPGPRIVTGLEILAEIIH-PEIFSELAPRDSF 299
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|374852873|dbj|BAL55796.1| (periplasmic solute binding protein [uncultured Acetothermia bacterium]) HSP 1 Score: 251.521 bits (641), Expect = 2.708e-78 Identity = 126/307 (41.04%), Postives = 196/307 (63.84%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAF 324
++I S LP+ATE+++ LGLGD +VG++H+CD+PP+ KKP + + V++ E + EID V RL SG S+Y+++ E L+ P L++TQ LC+VC PS ++V Q +K L P+IV P T E++L+ L +G+ TG+E+ ++ V R+R+ IR K + R RV +EW++PI GGHWV +M+E+AGGED G+ S WEE++ + PE+I++ PCGF +E++ + +L + G+ L A K +V+ V+A+ YF RPG R+V GL +LA +IH P+ F P D+F
Sbjct: 1 MKIISLLPSATEIVYELGLGDCLVGVSHDCDWPPDVFKKPKLSQAVVHSE-MPSAEIDAIVRERLHSGLSVYHIDAELLQKLNPDLILTQELCEVCAPSFDDVRQAVKLLHGQPKIVSLEPHTIEDILDNILTVGEVTGREDRARTLVAQLRRRIERIRAKTETLAH------RPRVCCIEWLEPIMIGGHWVPQMVEYAGGEDWLGELGQPSRYADWEEILHYNPEIIVLMPCGFSIERTLREMDVLTELAGWEELTAVKEGQVFIVEASAYFNRPGPRIVTGLEILAEIIH-PEIFSELAPRDSF 299
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1125331542|gb|OLC72603.1| (hypothetical protein AUH87_01295, partial [Deltaproteobacteria bacterium 13_1_40CM_4_54_4]) HSP 1 Score: 248.054 bits (632), Expect = 1.630e-77 Identity = 122/278 (43.88%), Postives = 179/278 (64.39%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPG 295
+RI S LP+ATE+ F+LGLGD+VVG+THECDYP EA++KP+VV +++ +S EID VS RL+ SLY ++E K R AAP L++TQ LC+VC NEV K+LK P I+ +P +VL +G T + + ++A V+ S +R+ +R Q Q N R RVA +EW DP++A GHWV EM+E AGG DV R+ S R+ W +V+ PE+I++ PCGF+L ++ +++ +L + G++ LPA K VY V+ + +F+RPG
Sbjct: 1 MRICSLLPSATEIAFALGLGDDVVGVTHECDYPHEARQKPIVVRSLIDANPMSSAEIDGWVSERLRGNLSLYGIDEVKFREAAPDLILTQELCEVCAVDYNEVAAAAKSLKEPATILALSPHCLTDVLRDIERVGAVTARADAARALVQRSHERIERVR-----QTAAQSNT-RPRVACLEWFDPVYAAGHWVPEMVELAGGFDVLGRREEPSARVEWTQVLDSVPEIIVLMPCGFELRRTIQESAVLQKLPGWNHLPAVKNGHVYGVNGSAFFSRPG 272
BLAST of EWM25907.1 vs. NCBI_GenBank
Match: gi|1083128742|gb|OGE24557.1| (hypothetical protein A3J42_10440 [Candidatus Dadabacteria bacterium RIFCSPHIGHO2_12_FULL_53_21]) HSP 1 Score: 249.595 bits (636), Expect = 1.744e-77 Identity = 121/310 (39.03%), Postives = 192/310 (61.94%), Query Frame = 0
Query: 18 LRIASFLPAATEMLFSLGLGDNVVGITHECDYPPEAKKKPVVVECVLNLEGLSMKEIDEAVSARLKSGKSLYNVNEEKLRTAAPTLLVTQNLCQVCGPSGNEVTQVLKTLKPPPEIVWQTPKTFEEVLEAYLELGKRTGKEEESKAWVEASRKRVADIRGKVQMQVDGQGNKGRVRVAFVEWIDPIFAGGHWVGEMLEWAGGEDVNSRKGRDSVRIPWEEVIAWAPEVIIVSPCGFDLEKSREQARLLMQREGFHALPAAKADRVYAVDANGYFARPGIRLVDGLLLLAHLIHGPKSFPWTGPADAFAHV 327
+RI SFLP+ TE+L+ LGLG++V G+THECDYPPEA++K V+ ++ LS +EIDE VS GKS Y ++++ L+ A P L++TQ LCQVC SGNEVT+ ++ L P I+ P+T E+++ L +G+ TG + ++ + +R+ +R + + D R RV +EW+DP + GHWV EM+E AGG + G S ++ W+E+ +AP+++ + PCG+D+EK+ + + + + + +LP+ ++Y DAN YF+RPG R+VDGL +LA IH + P DA ++
Sbjct: 1 MRICSFLPSTTEILYDLGLGNSVTGVTHECDYPPEAREKKRVIMSFIDPGKLSSREIDELVSRNAAEGKSTYLIDKDALKEADPDLILTQELCQVCAVSGNEVTEAVEALGKKPRIISLEPRTLSEIIDTILIIGEATGTGDRAREITDKLVERIERVRSLLGNERD------RPRVFCMEWLDPPYVAGHWVPEMVEIAGGSCGIGKAGEPSFKVSWKEIADFAPQMLFIMPCGYDVEKTLCEIETVTKHDEWFSLPSTSKGQIYIFDANSYFSRPGPRVVDGLEILAKTIHPESMKSYEPPPDAVVNL 304 The following BLAST results are available for this feature:
BLAST of EWM25907.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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