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Properties
| Property Name | Value |
|---|
| Product | MD-2-related lipid-recognition |
| Orig transcript id | gnl|cribi|Naga_100048g2.10277.mrna |
| Orig protein id | gnl|cribi|Naga_100048g2.10277 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:294853..295521 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4767 ID=rna4767|Name=rna4767|organism=Nannochloropsis gaditana|type=mRNA|length=2631bp
ATGCGAGGGGAGGAAGAGGCCGCGGCCTCTGCATCGGCCAAAGCAGCCGT
GTGGAGGGAGACCCTGGAGGCGACTCGCCACGAGCTTCGGCGCGAACGCT
CCGAAAAGGAGGCGGCCTTACGTTCTCTGGACGAAGAGCGAGAAGCACTG
CGGCAAGAGAGGGGCGCCTGGCGGCAAGGAGAGAGGGGGGCATGGGCGGA
GCTCACGGCGCTCCGCGACCAAGTCGCCACCGAGCAACGGGCGAAGGACG
CGTTGCTCTTGGACATGGCAGATATCCGGCGCCACGGGAAACAGCAATTG
CGCGAGCTTTTGGGGGAGCTGAAAGAATTTGACCGGGTCGTGGAGAGGAA
TTTTGCGGAGCTCTTTGAGGCGGCGGCAAGTGCTGCCGAGGCCCAGGACG
TACCGATCAATACTCCGTTGAAAGACCTGCTCGCTGCGGAGGAAGACGCA
AGCCGTCGGCGGGGGCTCTTGCGCTTAGGCGGCATCAGCGACCCATCGCC
GACGAAACAACTGGCCTTGGCCTTGGAGGAGGAACGGGGGGAAGGTGGTT
TGCCGGGGGGAAGGGGGGGGGAGGGAACCCTGGGGGAGAGTCGAAGGGGT
AGCCACGCGCTCGTCGCCTCTGGCGTGACCTCCTTGAGCATGCCAGCCAG
CGGCAAATTGATGGTTCGACAGGCGCAGGATTTGGTCCGGAAGTGGAGGC
TCAAATTGGAAGTTCTTCCCTCCTTTAATCAACGTTTCCGGGATGCCATT
GCCCGTGCCGGCGTCGCGTTCGAGAGCCGACTCGCGCACATGACCGAGCG
CTTGGCCAGCCAGGGGAACCAAGTCCAGGACGCGTACGATAAATTGGAAA
GGCTCCAAGCAAGCAGAAGAGATACTGAAGAGGATAATGCCCGGGAAGTT
GCCCGGGTCAAGCGGCGGGTGCAATCGGAGTACCAGGAATTGCTCGCAGA
GGTGACGGCGGAGAAAAATGCCTTGACCGCACGAGTGGCTCGGATGGAGG
TGGAAAGGACAGTGGCAGTGGAGGAGGCAAAGGCGGCTGGGAAAGAAGAG
GCGGCCGCTCAGCACGGACAAGAATTACTTGAGAAGGAGAAGGGTCTGCA
GGCTGCAAAAGAGGAGGTTGTTCAGTGGACCGGGCGGTGGAAGGCGGAAA
CGGAGGGGAGGGAGCGCGTGGAAAAAGAATTAAAGGCCTTGGCTGGAGAA
AAACGAGAAATTCAGACGGAGTTGGATAGGCTGCTGCGTCAGCTGCAGTA
CCGGGACGACGTCATCGCCGTCCTGAAAGAGGCGTTGGACAGCCACGGCT
TGGGAGAGTCGCGGCAGATCACTGCCCAGCTTGCCTTACTTGAAAGGCAC
ATGTCCAAGGTGGACGGAGAGGGCAGAAAGGAGTGTGGACGCGGGGGACA
GCGGGTGGTGTCGCTCATCAAGGAGGGAATGGAGCATGCTGCGGCGCACT
TGATGACGGTAGGCGCCTCGCAAGGGTGGGAGACTGGCGAGCTTCTGCGA
CGTGCCGACGAGCTTCAGCGTTACGGCTTTGAAGTTGCGGCCTTGGTAAC
TAGCACAAAGCAGATGCTGGAGGAGCTCAAATCGTGGAATGCACAGTGCC
AGGGGCCAGATATAGCCGATTGCAGGAGTGGTGGAGGGAAGCACTTGGTA
GAGAAGCTGCTGGAGGACAACGCCCGTCTTGCCCGCCTCCTCCGTGAGCT
TCATCAGGACCTGCAGCATCTTGTGCAGCGAGTCCGCGTTTCCTCTCCCC
GTCCTGGGACGAACCGCGGCGCCAGTAGTTTCTCAGCGAGGTCCAATCCG
GCCCCCGTAGGCAACTTTGGTAGTCCCCTGCGTCGAGCTGCCCAAGAAGC
GTTGCCACATGCCTCTCCTTCCCTTGATCGTCTCAAACTTGCCGCCCATT
GCAGCAAGAGCAGTGGTGGCGTTGGGGTTGGGTGCAGTAATCGTGAGGCG
AACAGCAACCACGAATTCCTTCGGCGTGGGCACATCGAAAACCAGGACAT
ATATTTACAATCAAGTCGATCGCTTCATAGTCGGGGGGAGAGCATGACCG
GACCGTTCAGAATGTATTCAGGACACTCAGAAACTGGACATGTCGCGCAG
AGTAGCCTTGATACAAGTTTGGCGGAGGCCAGTGATCAAGGAAATGGAGC
GAAAGGGCAGGGCGTTTTGGCACGGCATCAGATCGAGAGGCGGGGCCAGG
CGAGTGGATCAAAGCCTCTGGCGAACTTGGAAAAGATATCGAATGACTTA
CAAGAGATTGCTGCCAAGCTTGAGCACTTCAAATCCGGAGTAAAACTCCC
CGGTACAACACTAGCCTCAAGTCCTGAGCAAGGTAAACGAACGCACACCC
GTCGGTCAAGAAGGGAAGTACCGTAAAAACTTGAAAACAAAAGAGCTGGT
CGCCAAAAAATGACGCCGAGATGATTTTATGTGTTATGTAATTCTATGTC
TAAGGCACGAGGGGTATGCGGAAGGACTGGAAGAGGAGGACAAAGCGTGT
TTGTTTTTGTGCATATCGCTTAACTTGTCATTCGTCGTTGCTTAACAACA
GTAAATTGAGTCCTGCGACTAAGCATTTGACGATAAACCGGGAAAGTATG
AATAGAAGGCAAAGATATGAGCCTACACAGC back to topprotein sequence of rna4767 >rna4767-protein ID=rna4767-protein|Name=rna4767|organism=Nannochloropsis gaditana|type=polypeptide|length=163bp
MKCATWLIVILFLSKTQTMRAFQTLVSLIVVPCALASPVLFTSCHEDESP
LMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAV
KKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGA
EIACIRVPVQVDH back to topmRNA from alignment at CM002464.1:294853..295521+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4767 ID=rna4767|Name=rna4767|organism=Nannochloropsis gaditana|type=mRNA|length=669bp|location=Sequence derived from alignment at CM002464.1:294853..295521+ (Nannochloropsis gaditana)
GAAGCTGAATGTGTACATCTGGAATTTGGCTATTAAATTTTCAGAAATCT
GGCAGCTATGAAATGTGCAACATGGTTAATAGTcatcctttttctctcca
aGACACAGACTATGCGTGCCTTCCAAACGCTTGTAAGTCTTATCGTAGTG
CCGTGCGCGCTGGCTTCACCTGTACTTTTCACTTCCTGCCATGAAGATGA
AAGCCCACTTATGCTCGAGTCAATGGAAATTAATCCGTATCCCGTCAAAG
CCGGAGGAACGAGCAGTGTTGCAGTCACCGCACGAAGTACAGTTGCACTT
GAGCAGGGCAGTTACGTTGAAATGAGTTTCAAGGAGGGTCCGTTCATGGG
TGCCGTAAAGAAATATGACATGTGCTCAATGTCAGATCAGGACTGTCCTA
TTCCGGCGAACAGTCTTGTCAAGTTCGAGCTTGACTTTCAGATAAACTCC
CGCGCGAGCAAAGGTGTCGCTACTGGTAATGTGTTGGTTTCTGACCACAC
GGGTGCTGAGATCGCATGCATCCGCGTCCCCGTTCAAGTAGATCACTGAT
CTGTCAAGCGTAAATGACCGACCTCATCGAGCGCTGAAAATCTTAAAAAA
CACAAGATACAATTTCGGACATACTTACTACCAATCACAAAGCAATAAGG
CATATGCCAACCAATCGGA back to topCoding sequence (CDS) from alignment at CM002464.1:294853..295521+ >rna4767 ID=rna4767|Name=rna4767|organism=Nannochloropsis gaditana|type=CDS|length=492bp|location=Sequence derived from alignment at CM002464.1:294853..295521+ (Nannochloropsis gaditana)
ATGAAATGTGCAACATGGTTAATAGTcatcctttttctctccaaGACACA
GACTATGCGTGCCTTCCAAACGCTTGTAAGTCTTATCGTAGTGCCGTGCG
CGCTGGCTTCACCTGTACTTTTCACTTCCTGCCATGAAGATGAAAGCCCA
CTTATGCTCGAGTCAATGGAAATTAATCCGTATCCCGTCAAAGCCGGAGG
AACGAGCAGTGTTGCAGTCACCGCACGAAGTACAGTTGCACTTGAGCAGG
GCAGTTACGTTGAAATGAGTTTCAAGGAGGGTCCGTTCATGGGTGCCGTA
AAGAAATATGACATGTGCTCAATGTCAGATCAGGACTGTCCTATTCCGGC
GAACAGTCTTGTCAAGTTCGAGCTTGACTTTCAGATAAACTCCCGCGCGA
GCAAAGGTGTCGCTACTGGTAATGTGTTGGTTTCTGACCACACGGGTGCT
GAGATCGCATGCATCCGCGTCCCCGTTCAAGTAGATCACTGA back to top
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