EWM25905.1, cds4755 (CDS) Nannochloropsis gaditana

Overview
NameEWM25905.1
Unique Namecds4755
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:294910..295401 +

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Properties
Property NameValue
Protein idEWM25905.1
ProductMD-2-related lipid-recognition
Orig transcript idgnl|cribi|Naga_100048g2.10277.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:294910..295401 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003172ML_dom
Homology
[Close]
BLAST of EWM25905.1 vs. NCBI_GenBank
Match: gi|585107774|gb|EWM25905.1| (MD-2-related lipid-recognition [Nannochloropsis gaditana])

HSP 1 Score: 338.576 bits (867), Expect = 7.010e-118
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 0 
Query:    1 MKCATWLIVILFLSKTQTMRAFQTLVSLIVVPCALASPVLFTSCHEDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQVDH 163
            MKCATWLIVILFLSKTQTMRAFQTLVSLIVVPCALASPVLFTSCHEDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQVDH
Sbjct:    1 MKCATWLIVILFLSKTQTMRAFQTLVSLIVVPCALASPVLFTSCHEDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQDCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQVDH 163
[Close]
BLAST of EWM25905.1 vs. NCBI_GenBank
Match: gi|857970737|emb|CEP02598.1| (hypothetical protein PBRA_002565 [Plasmodiophora brassicae])

HSP 1 Score: 57.7658 bits (138), Expect = 2.254e-7
Identity = 35/146 (23.97%), Postives = 72/146 (49.32%), Query Frame = 0 
Query:   21 AFQTLVSLIVVPCALASPVLFTSCH----EDESPLMLESMEINPYPVKAGGTSSVAVTARSTVALEQGSYVEMSFKEGPFMGAVKKYDMCSMSDQ-DCPIPANSLVKFELDFQINSRASKGVATGNVLVSDHTGAEIACIRVPVQV 161
            A+  +++L V+  A A P+ F+SC     +D S L+++S++I+PYPVK GG++   +       ++ GS+ ++      +    +  D+C++S    CP  A+     +  FQ       G    ++++ +    E+ C+   + V
Sbjct:    2 AYWLVITLAVLSGADAFPIPFSSCAGNQADDASRLVIKSIDISPYPVKPGGSALANIGLSIKKKVDHGSHYDLKIYMDKYELVHESGDLCALSATFTCPKDADDSAVLQYKFQFPRVPFAGSLRLHLMIWNQNNQELCCVDFSIDV 147
The following BLAST results are available for this feature:
BLAST of EWM25905.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585107774|gb|EWM25905.1|7.010e-118100.00MD-2-related lipid-recognition [Nannochloropsis ga... [more]
gi|857970737|emb|CEP02598.1|2.254e-723.97hypothetical protein PBRA_002565 [Plasmodiophora b... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4767rna4767Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications