rna4763, rna4763 (mRNA) Nannochloropsis gaditana

Overview
Namerna4763
Unique Namerna4763
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length697
Alignment locationCM002464.1:281491..283188 +

Link to JBrowse

Properties
Property NameValue
ProductNUDIX hydrolase domain-like protein
Orig transcript idgnl|cribi|Naga_100134g16.9886.mrna
Orig protein idgnl|cribi|Naga_100134g16.9886
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:281491..283188 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100134g16gene4600Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4763rna4763-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25927.1cds4751Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4763 ID=rna4763|Name=rna4763|organism=Nannochloropsis gaditana|type=mRNA|length=697bp
TACATCTTTGTACAGTATATAAGGCATGTCGCACCTGGCCTTGGGCGGCA
CAGGGGTGGATAGCAGGGAGTTTGTCGCTCTGCAGTGTGAGAGGGTTGAA
GAGGAGAGGGCGCAATGCCCGGACGCGAGTGGCAGCACAATACCATCTCT
TGGCGAGGCAGAGGACCATCATGAACAGGATCAGCTCGATGGTCATCAGC
CGGGCGGGACGGATCGTGCGACAGGGGGCGTGAGAGACCCGAGAAGTGGA
GAAGAGTTATGGAGACGGTGCATGGAGGGAAGGAGACGAATCGACTTGTT
GGTGGAGGATTATCAGAGGTCCTTGGCGACGCGAAGGGTCGCCTTCTACG
AAATGATAGAGGCCTTGCACCGGGACCGGGAGGGACACGTAATGCCACGC
AACATGCAGTCGTACTCAAGCTATTGGCAGGACGAAATGGGCCAATGCCC
TCCCCGGATCATCACCTCCCCAGGTTATTCCGAGCGCTTGCGCCGTCTAA
ACGCAGCCCTTGAGGATGGGGGATGGACGCCTCAGGAGGAGAAAATCTTT
AAAGCATTGGTATTGAAAGAGAAAGCCGCGATTCAAGCTCGACTGGGGCT
GGAAGGAAAGGACATTCCTCTGTTGGGTCGTATGACGGAGACGGCGCGCA
GGGAGGACGACAAGGTGGAGCGTATGCTGGACTGGCGCAAGTCCTGA
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protein sequence of rna4763

>rna4763-protein ID=rna4763-protein|Name=rna4763|organism=Nannochloropsis gaditana|type=polypeptide|length=236bp
MRAGRAAGSIRRGTSFFGVVLTMLVGTAILPRVLGFVAGLPRHQVSRVIA
ASIASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARS
LVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAG
DASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREF
QDFFLLRVGKEHDMTRYRYPPGEVSEVSGMERGDQM
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mRNA from alignment at CM002464.1:281491..283188+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4763 ID=rna4763|Name=rna4763|organism=Nannochloropsis gaditana|type=mRNA|length=1698bp|location=Sequence derived from alignment at CM002464.1:281491..283188+ (Nannochloropsis gaditana)
AGGCGATGCGtgcgggaagggcggcggGATCCATTCGAAGAGGGACCTCA
TTTTTCGGTGTCGTGCTCACGATGCTCGTCGGCACTGCCATTCTTCCTCG
TGTCCTTGGCTTCGTCGCGGGGCTCCCACGCCATCAAGTATCGCGTGTAA
TCGCAGCTAGTATTGCGAGTGCGGGGCCGCGGATATACGAGGAAGGACAG
GTACATGAGCTCGGGGCGACGAGTGTGTTgtagggtgggaaagggaggga
tgaggctGAGGGAGAGCCGCGTCTGTCTCTGTCGTTATCACGCATGGATG
GACGTTATTCTCACTCGGGACGATAACAGGGTATAATTTAGTTGCAAACT
TTGCTTGAAAAGACGCAAACGTGTGTCTAGATAGAAGTCAGACGATAGCA
AGGGCGCCGCAGCCAAGCCAGCCAGTAATTTTCTTATCAGCATCCCTCAC
AACGAATGGAACGGGACCTAACGACACTTGATAATGGTTCAACATTTAAT
AATAATCGCAGGATCCCAAGGAGCTCTTTGAGCTCTTTGAGCCGCCGACC
GCGGCGGAGATAGCCGGCGCAAAAGTAGAACGACTGCGGCCATTGGGCCG
TCGAAAGGCTCGATCCCTCGTACACGCCGAGGGGGATTGGCACCGGTAAG
ACATTAGATATACAGTatgggaaggagcaggataTAGGAGAGGGGCCTAA
GAGAGGGGATGTGCCATTGACGTGTCGAAAAGCAAATATGGCAAGGATTG
TCGGTGGAGCTTGGGGCAGGCGCCGTAGCTTGGTGATGTGACGGTTCTCT
TTTCGGTTTTCTTGTGTTTGATTGTACGTCTTGTATTTGAGAAACAGCAA
TCATCtcgttcttcccccccggcaaaCAGCCCTCTCCCGTGCCATCAGGA
GAGACCGGATCATACAGCATCCCCCCCTTTGAGACTCCCCCCCGGCTCTT
GCTCGCTCCCATTAaattttccctttccattcttTGTGTTTACAGGGCGG
TCCATATCTGGCTCACGGACGACCATGGAaggctgctcctccagcgccgt
TCGAAATTCAAAGACACCTTCCCAGGACGATGGGACGTGAGCTGTGGGGG
GCACATAGAGGCAGGGGATGCCTCTTTTCCTACTGCGGTGCGGGAGCTGG
AAGAAGAGTTGGGACTGGAAGAGCCCGTGGCAAGTCAAGTGGAGAAGTTG
TACACGCTCGCCTGCACGAATAGAGGAGTCACCGAGAGGCATGGCGCCTT
TATTTGCCGGGAATTTCAAGATTTCTTTTTATTGCGCGTGGGCAAGGAAC
ATGATATGACAAGGTACAGATACCCGCCCGGGGAAGTGAGCGAGGTAAGC
GGAATGGAGCGAGGGGATCAAATGTAGGTGTCGGTTCGGAACGAACAATA
CCTCACTCCAATTCCTCCCCCACAGATCAAGCTCATGCATTACAAGGACT
GGGAGGCAAAAGTGGCAGCCAACGACCCGGAGTACGTGCCAAGGCAAGCT
CATTACAGGGAGGCATTCTGTAAGCACATGGATGAGTTGCTGGGAGACAG
GAGCAGATAATGAGTCGAAAATTTTGGAGGAATCGAACGAAAAGAAACGA
GAAGGTAAAATGGACATGTCATGATGCAGACACCTCATAAATATTTGATT
GACCCAAAAATATAAGTCTTTTCGACAGTTTCTGGCGTTCTCCGCATC
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Coding sequence (CDS) from alignment at CM002464.1:281491..283188+

>rna4763 ID=rna4763|Name=rna4763|organism=Nannochloropsis gaditana|type=CDS|length=2133bp|location=Sequence derived from alignment at CM002464.1:281491..283188+ (Nannochloropsis gaditana)
ATGCGtgcgggaagggcggcggGATCCATTCGAAGAGGGACCTCATTTTT
CGGTGTCGTGCTCACGATGCTCGTCGGCACTGCCATTCTTCCTCGTGTCC
TTGGCTTCGTCGCGGGGCTCCCACGCCATCAAGTATCGCGTGTAATCGCA
GCTAGTATTGCGAGTGCGGGGCCGCGGATATACGAGGAAGGACAGGATCC
CAAGGAGCTCTTTGAGCTCTTTGAGCCGCCGACCGCGGCGGAGATAGCCG
GCGCAAAAGTAGAACGACTGCGGCCATTGGGCCGTCGAAAGGCTCGATCC
CTCGTACACGCCGAGGGGGATTGGCACCGGGCGGTCCATATCTGGCTCAC
GGACGACCATGGAaggctgctcctccagcgccgtTCGAAATTCAAAGACA
CCTTCCCAGGACGATGGGACGTGAGCTGTGGGGGGCACATAGAGGCAGGG
GATGCCTCTTTTCCTACTGCGGTGCGGGAGCTGGAAGAAGAGTTGGGACT
GGAAGAGCCCGTGGCAAGTCAAGTGGAGAAGTTGTACACGCTCGCCTGCA
CGAATAGAGGAGTCACCGAGAGGCATGGCGCCTTTATTTGCCGGGAATTT
CAAGATTTCTTTTTATTGCGCGTGGGCAAGGAACATGATATGACAAGGTA
CAGATACCCGCCCGGGGAAGTGAGCGAGGTAAGCGGAATGGAGCGAGGGG
ATCAAATGTAGATGCGtgcgggaagggcggcggGATCCATTCGAAGAGGG
ACCTCATTTTTCGGTGTCGTGCTCACGATGCTCGTCGGCACTGCCATTCT
TCCTCGTGTCCTTGGCTTCGTCGCGGGGCTCCCACGCCATCAAGTATCGC
GTGTAATCGCAGCTAGTATTGCGAGTGCGGGGCCGCGGATATACGAGGAA
GGACAGGATCCCAAGGAGCTCTTTGAGCTCTTTGAGCCGCCGACCGCGGC
GGAGATAGCCGGCGCAAAAGTAGAACGACTGCGGCCATTGGGCCGTCGAA
AGGCTCGATCCCTCGTACACGCCGAGGGGGATTGGCACCGGGCGGTCCAT
ATCTGGCTCACGGACGACCATGGAaggctgctcctccagcgccgtTCGAA
ATTCAAAGACACCTTCCCAGGACGATGGGACGTGAGCTGTGGGGGGCACA
TAGAGGCAGGGGATGCCTCTTTTCCTACTGCGGTGCGGGAGCTGGAAGAA
GAGTTGGGACTGGAAGAGCCCGTGGCAAGTCAAGTGGAGAAGTTGTACAC
GCTCGCCTGCACGAATAGAGGAGTCACCGAGAGGCATGGCGCCTTTATTT
GCCGGGAATTTCAAGATTTCTTTTTATTGCGCGTGGGCAAGGAACATGAT
ATGACAAGGTACAGATACCCGCCCGGGGAAGTGAGCGAGGTAAGCGGAAT
GGAGCGAGGGGATCAAATGTAGATGCGtgcgggaagggcggcggGATCCA
TTCGAAGAGGGACCTCATTTTTCGGTGTCGTGCTCACGATGCTCGTCGGC
ACTGCCATTCTTCCTCGTGTCCTTGGCTTCGTCGCGGGGCTCCCACGCCA
TCAAGTATCGCGTGTAATCGCAGCTAGTATTGCGAGTGCGGGGCCGCGGA
TATACGAGGAAGGACAGGATCCCAAGGAGCTCTTTGAGCTCTTTGAGCCG
CCGACCGCGGCGGAGATAGCCGGCGCAAAAGTAGAACGACTGCGGCCATT
GGGCCGTCGAAAGGCTCGATCCCTCGTACACGCCGAGGGGGATTGGCACC
GGGCGGTCCATATCTGGCTCACGGACGACCATGGAaggctgctcctccag
cgccgtTCGAAATTCAAAGACACCTTCCCAGGACGATGGGACGTGAGCTG
TGGGGGGCACATAGAGGCAGGGGATGCCTCTTTTCCTACTGCGGTGCGGG
AGCTGGAAGAAGAGTTGGGACTGGAAGAGCCCGTGGCAAGTCAAGTGGAG
AAGTTGTACACGCTCGCCTGCACGAATAGAGGAGTCACCGAGAGGCATGG
CGCCTTTATTTGCCGGGAATTTCAAGATTTCTTTTTATTGCGCGTGGGCA
AGGAACATGATATGACAAGGTACAGATACCCGCCCGGGGAAGTGAGCGAG
GTAAGCGGAATGGAGCGAGGGGATCAAATGTAG
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Synonyms
Publications