EWM25927.1, cds4751 (CDS) Nannochloropsis gaditana

Overview
NameEWM25927.1
Unique Namecds4751
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:281496..281690 +
Alignment locationCM002464.1:282002..282135 +
Alignment locationCM002464.1:282486..282867 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25927.1
ProductNUDIX hydrolase domain-like protein
Orig transcript idgnl|cribi|Naga_100134g16.9886.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:281496..281690 +
CM002464.1supercontigCM002464.1:282002..282135 +
CM002464.1supercontigCM002464.1:282486..282867 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: INTERPRO
TermDefinition
IPR000086NUDIX_hydrolase_dom
IPR015797NUDIX_hydrolase_dom-like
Homology
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|585107798|gb|EWM25927.1| (NUDIX hydrolase domain-like protein [Nannochloropsis gaditana])

HSP 1 Score: 479.174 bits (1232), Expect = 5.075e-171
Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query:    1 MRAGRAAGSIRRGTSFFGVVLTMLVGTAILPRVLGFVAGLPRHQVSRVIAASIASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGMERGDQM 236
            MRAGRAAGSIRRGTSFFGVVLTMLVGTAILPRVLGFVAGLPRHQVSRVIAASIASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGMERGDQM
Sbjct:    1 MRAGRAAGSIRRGTSFFGVVLTMLVGTAILPRVLGFVAGLPRHQVSRVIAASIASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGMERGDQM 236          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|551665604|ref|XP_005835564.1| (hypothetical protein GUITHDRAFT_151788 [Guillardia theta CCMP2712] >gi|428179714|gb|EKX48584.1| hypothetical protein GUITHDRAFT_151788 [Guillardia theta CCMP2712])

HSP 1 Score: 143.28 bits (360), Expect = 2.070e-38
Identity = 79/193 (40.93%), Postives = 119/193 (61.66%), Query Frame = 0
Query:   40 LPRHQVSRVIAASIASA----GPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVS 228
            +P H V+   + ++ SA       +   GQD  ELF++++PP++  I G + E  R  G  + R LVH +GDWHRA+HIWL D  G L++Q+RS+ KDTFPG+WDVS  GH+ +GD+   TA++E +EELGL+     ++E L T+A +  G +   G F+C E++D FLL+   E  +   ++ P EV  VS
Sbjct:   23 IPIHLVASKSSVTLRSAFRTRALSMAAPGQDLSELFDVYKPPSS--IPGFRGEPERA-GISRQRKLVHTQGDWHRAIHIWLYDGQGNLIIQQRSEGKDTFPGKWDVSIAGHVSSGDSVIETAMKESKEELGLDIK-KEELEYLGTIATSMAGSSPITGDFLCNEYKDIFLLKY--EGHLDDLKFAPEEVQAVS 209          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|397598936|gb|EJK57316.1| (hypothetical protein THAOC_22652 [Thalassiosira oceanica])

HSP 1 Score: 128.642 bits (322), Expect = 1.671e-30
Identity = 81/205 (39.51%), Postives = 108/205 (52.68%), Query Frame = 0
Query:   51 ASIASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVE-----RLRPLGR----RKARSLVHAEGDWHRAVHIWLTD----DHGR----LLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVE-------KLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGME 231
            A++A AG   +   QD  ELF+L+  P   E+  A V         P  R     K R LVH +GDWHR+VH+WL      D G+    +LLQRRS +KDT P   DVSC GH++AG  +  TA REL+EELG    +  + E       K+ T+  + +G TE+ G F+CRE+QD FLL    +       + P    EVSG E
Sbjct:   33 ATVAMAGSN-FHLAQDSNELFDLYLTPPDKELHNAVVTPAWGMEFNPPKRIDRSPKERGLVHRDGDWHRSVHVWLAQTTNGDRGKTSCKVLLQRRSPYKDTHPNLLDVSCAGHVDAGSDTVETATRELQEELGGNGIMQDRYEAEDVRRSKVCTVTSSIQGQTEKFGRFLCREYQDVFLLWWPSDEAFAPGLFSPQTEEEVSGFE 236          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|831791520|ref|XP_012759740.1| (hypothetical protein SAMD00019534_033940 [Acytostelium subglobosum LB1] >gi|735994530|dbj|GAM20219.1| hypothetical protein SAMD00019534_033940 [Acytostelium subglobosum LB1])

HSP 1 Score: 119.398 bits (298), Expect = 5.554e-30
Identity = 60/136 (44.12%), Postives = 83/136 (61.03%), Query Frame = 0
Query:   92 PLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEV 227
            P G    RS +HA+G WHR VH+WL DD G LL+Q+R+  K++ P  WD+S  GH EAG  S  TAV+EL EELG++   A ++E L+T  C    V  ++G +I  E  D +LLRV    D+TR++    EV  +
Sbjct:   15 PAGYSLPRSEIHAKGLWHRVVHVWLIDDKGNLLIQQRADNKESHPSLWDISTAGHCEAGMNSRDTAVKELSEELGMQLASADELEYLFT--CRTNHVL-KNGLYIDNELADVYLLRVASPIDLTRFKLQVEEVQAI 147          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|1013937011|gb|KYQ90709.1| (hypothetical protein DLAC_09344 [Dictyostelium lacteum])

HSP 1 Score: 115.161 bits (287), Expect = 3.501e-28
Identity = 57/135 (42.22%), Postives = 78/135 (57.78%), Query Frame = 0
Query:   93 LGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEV 227
            LG  + RS+VH++G WHR VH+W+ D  G+LL+QRRS  K++FPG WD S  GHIEAG  S   A+REL EELG    +   V  L  L   N+    R G ++  E  D +L+      D+++      EVS+V
Sbjct:   17 LGYSEPRSVVHSKGLWHRVVHVWIVDSDGKLLIQRRSNNKESFPGYWDNSSAGHIEAGQTSKDAAIRELNEELG----ILHSVNDLELLFTYNKQYVLRSGKYLDNEIADVYLITYTFPFDLSKLTLQVEEVSDV 147          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|255087712|ref|XP_002505779.1| (predicted protein [Micromonas commoda] >gi|226521049|gb|ACO67037.1| predicted protein [Micromonas commoda])

HSP 1 Score: 112.464 bits (280), Expect = 4.352e-27
Identity = 74/181 (40.88%), Postives = 93/181 (51.38%), Query Frame = 0
Query:   53 IASAGPRIYEEGQDPKELFELFEPPTAAEIAGAKVERLRPL--GRRKARSLVHAEGDWHRAVHIWLTDDHGRLL-LQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGM 230
            + S  P    E Q   E+F++  PPTA    G  V + RP+  G  K R +VH    WHR+VH+WL D    L+ LQ+RS  KDTFP RWD+S  GHI +GD S PTAVREL EELG    V    E L  L        +  G   C  F+D ++LR   E     +     EVS V+ M
Sbjct:    1 MTSRNPNALAEAQSSSEMFDVMCPPTA----GFDVYKDRPVPTGESKTRGVVHQRKIWHRSVHVWLVDPKRSLVALQKRSPNKDTFPNRWDISAAGHIGSGDESRPTAVRELAEELG----VICVEEDLDFLGTVPAEQADLGG---CNCFEDMYVLRCDSES--IAFAVGEAEVSAVAWM 168          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|1083005866|gb|OGD08971.1| (hypothetical protein A2397_05755 [Candidatus Amesbacteria bacterium RIFOXYB1_FULL_44_23])

HSP 1 Score: 109.768 bits (273), Expect = 2.947e-26
Identity = 56/145 (38.62%), Postives = 83/145 (57.24%), Query Frame = 0
Query:   94 GRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVS--GMERGDQM 236
            G +K +S VH +GDWHR+VH+WL +   ++L+Q+R+  K  FP  WD+S  GH+ AG+ S  +A+RE +EELGL        + L  L    R +    G+ I  E QD FL  V K+  ++  R    EVSE+   G+++  QM
Sbjct:   15 GVKKLKSDVHKQGDWHRSVHVWLMNSQNQILIQKRAPGKAAFPNHWDISSAGHVVAGEDSLTSALRETQEELGL----TLNPQDLIYLFTNTRSLVLNSGSLIENEIQDVFL--VKKDVKLSDLRLQKKEVSEIKFVGLKKLKQM 153          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|818855061|gb|KKU92269.1| (Nudix hydrolase 3 [Microgenomates group bacterium GW2011_GWA1_48_10])

HSP 1 Score: 110.153 bits (274), Expect = 3.054e-26
Identity = 54/152 (35.53%), Postives = 84/152 (55.26%), Query Frame = 0
Query:   80 AEIAGAKVERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGME 231
            AE      E     GR K +  VH++GDWHRA H+W+ +  G+LL+Q+RS  KD++P  WD+S  G + AG+ +   A+RE+EEELG++     Q+EKL+T    +       G +   EF D FL  +     M  ++    E++EV  ++
Sbjct:    2 AEFLDVLDENGNSTGRTKLKQQVHSDGDWHRAAHVWIVNSKGQLLIQKRSANKDSYPNMWDISAAGRVSAGEDTVTAAIREIEEELGIKVS-PKQLEKLFTAKSKD---VLNDGKYFNNEFDDVFLAHIDLNPSMINFQ--KSEIAEVKYID 147          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|330794520|ref|XP_003285326.1| (hypothetical protein DICPUDRAFT_46012 [Dictyostelium purpureum] >gi|325084690|gb|EGC38112.1| hypothetical protein DICPUDRAFT_46012 [Dictyostelium purpureum])

HSP 1 Score: 108.612 bits (270), Expect = 1.160e-25
Identity = 58/140 (41.43%), Postives = 83/140 (59.29%), Query Frame = 0
Query:   88 ERLRPLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLY-TLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSE 226
            E+   LG    R+ +H +G +HR VH+W+ D +G +L+Q+R+  KD++P  WD SC GHIEAG  S  TAV+EL EELGL     +++E L+ TL C         G FI  E  D +L+ +GK  D+ + +    EVSE
Sbjct:   10 EKGNQLGYSLPRAEIHQKGLYHRVVHVWIVDSNGMVLIQKRTASKDSYPSMWDKSCAGHIEAGMGSKETAVKELSEELGLLFS-ENRLELLFSTLQCN----ILNEGKFIDNEISDVYLITLGKPFDLQKLKLQVEEVSE 144          
BLAST of EWM25927.1 vs. NCBI_GenBank
Match: gi|1160569437|ref|XP_020437973.1| (hypothetical protein PPL_01099 [Polysphondylium pallidum PN500] >gi|281211705|gb|EFA85867.1| hypothetical protein PPL_01099 [Polysphondylium pallidum PN500])

HSP 1 Score: 106.686 bits (265), Expect = 4.640e-25
Identity = 53/139 (38.13%), Postives = 76/139 (54.68%), Query Frame = 0
Query:   92 PLGRRKARSLVHAEGDWHRAVHIWLTDDHGRLLLQRRSKFKDTFPGRWDVSCGGHIEAGDASFPTAVRELEEELGLEEPVASQVEKLYTLACTNRGVTERHGAFICREFQDFFLLRVGKEHDMTRYRYPPGEVSEVSGM 230
            P G    RS +H++G WHR VH+WL D  G LL+Q+RS  K++F   WD+SC GHIEAG  S  TA++EL+EELGL    AS++E L+T                  E  D +L    K  +++ ++    EV  +  +
Sbjct:   14 PAGYSLPRSEIHSKGMWHRVVHVWLVDTEGNLLIQQRSANKESFASYWDISCAGHIEAGMNSIDTAIKELDEELGLHITDASKLEYLFTY----------------NELADVYLYTFSKHMELSEFKLQEEEVQALKWL 136          
The following BLAST results are available for this feature:
BLAST of EWM25927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107798|gb|EWM25927.1|5.075e-171100.00NUDIX hydrolase domain-like protein [Nannochlorops... [more]
gi|551665604|ref|XP_005835564.1|2.070e-3840.93hypothetical protein GUITHDRAFT_151788 [Guillardia... [more]
gi|397598936|gb|EJK57316.1|1.671e-3039.51hypothetical protein THAOC_22652 [Thalassiosira oc... [more]
gi|831791520|ref|XP_012759740.1|5.554e-3044.12hypothetical protein SAMD00019534_033940 [Acytoste... [more]
gi|1013937011|gb|KYQ90709.1|3.501e-2842.22hypothetical protein DLAC_09344 [Dictyostelium lac... [more]
gi|255087712|ref|XP_002505779.1|4.352e-2740.88predicted protein [Micromonas commoda] >gi|2265210... [more]
gi|1083005866|gb|OGD08971.1|2.947e-2638.62hypothetical protein A2397_05755 [Candidatus Amesb... [more]
gi|818855061|gb|KKU92269.1|3.054e-2635.53Nudix hydrolase 3 [Microgenomates group bacterium ... [more]
gi|330794520|ref|XP_003285326.1|1.160e-2541.43hypothetical protein DICPUDRAFT_46012 [Dictyosteli... [more]
gi|1160569437|ref|XP_020437973.1|4.640e-2538.13hypothetical protein PPL_01099 [Polysphondylium pa... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4763rna4763Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications