rna4762, rna4762 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4762
Unique Name	rna4762
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2063
Alignment location	CM002464.1:280075..281284 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100134g15.9895.mrna
Orig protein id	gnl\|cribi\|Naga_100134g15.9895
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:280075..281284 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100134g15	gene4599	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4762	rna4762-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25936.1	cds4750	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:280075..281284-
coding sequence from alignment at CM002464.1:280075..281284-

mRNA sequence

>rna4762 ID=rna4762|Name=rna4762|organism=Nannochloropsis gaditana|type=mRNA|length=2063bp
TCTGGTGAGCATGTCTTTTTCTGAGGTCATGTCGGCAATGTTGTGCAAAT
GCCTCGTAGCGGTTTCAAACCTACATGCTGAGCGTAGCTAACCTGGCCTA
TTTGACACGAAATAAAAATCCTATGCAAATGTGAATGTAATTGACATCAT
CCGTTCGTTTTATAACTCGTTGTTGATAGGTCCATTTTATTCAAAAATGG
TGATGGACCTCGATCCTCCCATGCGGCTCGTCCCCCAGCCTTGCGTTTCG
CCTGTTCGGAATGTCGCCGTGGATGTCACCACGAAATCAAAAAGCAAGAC
GACATGGCCAGCTGAAAATAAAAAAATAGAGTCAAGTGATAGCGTCGAGA
AGGCTCATGGGTCCCCACGGAAGGAGGACCCCATCATGGGAGGCATAAGC
AACACAGCGGACAGTACCTCTGGGAGGCGACAATGGAAGAAACTATTGTG
GGAATTTTGCATCGGCGGCATGTGGAAAAATCCGCCCTCTACGGCTCACT
TTGACGGCTTGCGAGGAGTGGCCTGTTTGACGGTGCTAGTCTGGCATTTT
CTGTGCGCGTATTACCCAGGCATCGCCTTTCACAACAAAGCTTTTGTGCA
GGACGGCGCATACTCGGTCAAATGGGGCCGATCTTGGCTGCTATTCTTCT
TTAATGGGCCCTTCTCCGTCGACGTCTTCTATGGCCTGAGCGGACGCGTC
CTCCTCCACTCGTACATGGCCCACGGGAAGAACAGTACGCTCGTCAGTGC
TATGTTTCGGCGGATCCTACGATTAATGGTGCCCTTCGCCGTCATCGTTA
TCTTCGCTTGGAAAGAAGGCCAGCTAGGCTGGGTGCAGTACGGCGTCCAG
GCAGCCGCCTGGACTCGATCGCATTGGCTTCCCAGCCCCACTTTGGGGGC
AACCGTGGGCTCCTTGCGTTGGATAGACATAAAGAACTTCATCACCCTCA
TGTTCACCGAAAGCAACCTGGCCTACTATATCTACAACCCGCGAAATTTG
TGGACGATTCGAACAGAATGGCGGGGTTCCCTGGCCGTTTTCTCCCTCGG
TTTCGTCATGAAAAACCTGCAAAGCCGTTTTCGCTGGGTCCTTTACCCAA
TCCTCTTCCGCTGGTTCGAGGTTGAAAATGGGGGGGCCCTCCTTGCGTTT
ATCGTCGGTTTTTTCCTCTGTGATGTAGAACGAAACACACCCGTCGTCAC
CTACCTGACCTCCTCTCCCACCGTGCTGGCCCAAACCCTCCGGGTCACTC
TCGCGCTGGTGAGTGCGGGGATTTGGATCCATGTCCAGAGTACCTTGGGC
TTTCAGGCGCAAGTGAGCCTGCCGCCCGGCGATGCCGATGCGTTGCTGAA
TTTTCGGCGTTGGACGGCGCTGGGAACTTGTGGTTGTCTCGTCTTCGTCC
AGCTGACCCCGCTGATGCGGTGGCTCCTGGCCACGCCCCCCCTCCGTTTC
GTGGGCTACGTCTCCTTTTGCCTGTACCTGGTCCACGGAGAGGTCCTGAA
TACCTTCGCTGCCTGGCTATTTTTGCGCCTCTATCAGGAGGGTCAGGGCT
TAGGGTACGTCCCTAGTTCCCTGGTGGTGCTCGCAACGGCTTTTCCCGTG
TCATTGGTGCTGGCTTGGGTCATGACCGTCTTGGTGGATGATCCGAGCGT
GCGGCTCGCCCGCGCTGTCTACCAAAATTTCTTTTGTGCTTTCGACGAGA
AGCTGTGGGTGCATCGACAATTGAAAGCTGGAGAGATGAAAGTGCGCGGT
TGGTGTAGTAGCATGCTGGCTTCCCCTACCCTGGGCCCCTTGATGCACCT
TTTCCTTTTCACTGAAGTCCCAAACCTATTTCGTCGACCGAACAGCAAGA
AAATAAGCCTGCAAGAGACGGAGATTGAGTTATACACCGGGAGGGAGGCT
CACAAACTATGAGAACACACGAAAGTAAGCGGACAGATGTAGAAAACAGC
GAGCAACGTCATGTACACAGTGGATTGTATTTTGCTCACGTCGGAAAAGG
TACTTTTATTTATGCTTTTTGGAATATCGGAATATCGTGCCTGAACATCG
CCATAAGCTCACC

protein sequence of rna4762

>rna4762-protein ID=rna4762-protein|Name=rna4762|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MSHLALGGTGVDSREFVALQCERVEEERAQCPDASGSTIPSLGEAEDHHE
QDQLDGHQPGGTDRATGGVRDPRSGEELWRRCMEGRRRIDLLVEDYQRSL
ATRRVAFYEMIEALHRDREGHVMPRNMQSYSSYWQDEMGQCPPRIITSPG
YSERLRRLNAALEDGGWTPQEEKIFKALVLKEKAAIQARLGLEGKDIPLL
GRMTETARREDDKVERMLDWRKS

mRNA from alignment at CM002464.1:280075..281284-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4762 ID=rna4762|Name=rna4762|organism=Nannochloropsis gaditana|type=mRNA|length=1210bp|location=Sequence derived from alignment at CM002464.1:280075..281284- (Nannochloropsis gaditana)
TACATCTTTGTACAGTATATAAGGCATGTCGCACCTGGCCTTGGGCGGCA
CAGGGGTGGATAGCAGGGAGTTTGTCGCTCTGCAGTGTGAGAGGGTTGAA
GAGGAGAGGGCGCAATGCCCGGACGCGAGTGGCAGCACAATACCATCTCT
TGGCGAGGCAGAGGACCATCATGAACAGGATCAGCTCGATGGTCATCAGC
CGGGCGGGACGGATCGTGCGACAGGGGGCGTGAGAGACCCGAGAAGTGGA
GAAGAGTTATGGAGACGGTGCATGGAGGGAAGGAGACGAATCGACTTGTT
GGTGGAGGATTATCAGGTACGTAGGGGGGGAAAGGGGGGTAACATCGCTT
CTATAGAATTCAATGTTAAATGTGCATGCATATTACCGTGCCAGGAAAGC
GGTCGTGAACACAGCAGGGGAAGAACTGCGGGAAATTGAAAGGAGGAATG
AAAGGCTAGTGTCGGTGTCATGTCCCTCATACATGCTCTCCCCACCCTCT
CCGCTTCCCTTCTGTCAGAGGTCCTTGGCGACGCGAAGGGTCGCCTTCTA
CGAAATGATAGAGGCCTTGCACCGGGACCGGGAGGGACACGTAATGCCAC
GCAACATGCAGTCGTACTCAAGCTATTGGCAGGACGAAATGGGCCAATGC
CCTCCCCGGATCATCACCTCCCCAGGTTATTCCGAGCGCTTGCGCCGTCT
AAACGCAGCCCTTGAGGATGGGGGATGGACGCCTCAGGAGGAGGTGCGTG
GGATTTGGGACGTGTGGTGGGCGCACTTGCAGAGGACATGCGCGTGGTTC
ATGCTCCTTCTCATGCCACGTCTGATCGGTCACAGAAAATCTTTAAAGCA
TTGGTATTGAAAGAGAAAGCCGCGATTCAAGCTCGACTGGGGCTGGAAGG
AAAGGACATTCCTCTGTTGGGTCGTATGACGGAGACGGCGCGCAGGGAGG
ACGACAAGGTGGAGCGTATGCTGGACTGGCGCAAGGTAAGCGGGGAGAGG
GGGCCAGGGAGGGAGGGAAGGAGAAAGGCGTTCCATGGCGACAAATACCG
TGTGTAAAGAAAACCCATGCTCATCCTCGCATTTATGTCAGGTCTCCGAA
CAGCTCCGCCCCCACCACCCAAAGCGCCTCCGGACTCTGCCCCGCCCCGT
GCTCTCTCTCGCCCGGCGTTGGCGCAATAAAGTGGCAGTTCCTTCCACCT
TCAGTCCTGA

Coding sequence (CDS) from alignment at CM002464.1:280075..281284-

>rna4762 ID=rna4762|Name=rna4762|organism=Nannochloropsis gaditana|type=CDS|length=2688bp|location=Sequence derived from alignment at CM002464.1:280075..281284- (Nannochloropsis gaditana)
TCCTGAAAAATCTTTAAAGCATTGGTATTGAAAGAGAAAGCCGCGATTCA
AGCTCGACTGGGGCTGGAAGGAAAGGACATTCCTCTGTTGGGTCGTATGA
CGGAGACGGCGCGCAGGGAGGACGACAAGGTGGAGCGTATGCTGGACTGG
CGCAAGAGGTCCTTGGCGACGCGAAGGGTCGCCTTCTACGAAATGATAGA
GGCCTTGCACCGGGACCGGGAGGGACACGTAATGCCACGCAACATGCAGT
CGTACTCAAGCTATTGGCAGGACGAAATGGGCCAATGCCCTCCCCGGATC
ATCACCTCCCCAGGTTATTCCGAGCGCTTGCGCCGTCTAAACGCAGCCCT
TGAGGATGGGGGATGGACGCCTCAGGAGGAGATGTCGCACCTGGCCTTGG
GCGGCACAGGGGTGGATAGCAGGGAGTTTGTCGCTCTGCAGTGTGAGAGG
GTTGAAGAGGAGAGGGCGCAATGCCCGGACGCGAGTGGCAGCACAATACC
ATCTCTTGGCGAGGCAGAGGACCATCATGAACAGGATCAGCTCGATGGTC
ATCAGCCGGGCGGGACGGATCGTGCGACAGGGGGCGTGAGAGACCCGAGA
AGTGGAGAAGAGTTATGGAGACGGTGCATGGAGGGAAGGAGACGAATCGA
CTTGTTGGTGGAGGATTATCAGTCCTGAAAAATCTTTAAAGCATTGGTAT
TGAAAGAGAAAGCCGCGATTCAAGCTCGACTGGGGCTGGAAGGAAAGGAC
ATTCCTCTGTTGGGTCGTATGACGGAGACGGCGCGCAGGGAGGACGACAA
GGTGGAGCGTATGCTGGACTGGCGCAAGAGGTCCTTGGCGACGCGAAGGG
TCGCCTTCTACGAAATGATAGAGGCCTTGCACCGGGACCGGGAGGGACAC
GTAATGCCACGCAACATGCAGTCGTACTCAAGCTATTGGCAGGACGAAAT
GGGCCAATGCCCTCCCCGGATCATCACCTCCCCAGGTTATTCCGAGCGCT
TGCGCCGTCTAAACGCAGCCCTTGAGGATGGGGGATGGACGCCTCAGGAG
GAGATGTCGCACCTGGCCTTGGGCGGCACAGGGGTGGATAGCAGGGAGTT
TGTCGCTCTGCAGTGTGAGAGGGTTGAAGAGGAGAGGGCGCAATGCCCGG
ACGCGAGTGGCAGCACAATACCATCTCTTGGCGAGGCAGAGGACCATCAT
GAACAGGATCAGCTCGATGGTCATCAGCCGGGCGGGACGGATCGTGCGAC
AGGGGGCGTGAGAGACCCGAGAAGTGGAGAAGAGTTATGGAGACGGTGCA
TGGAGGGAAGGAGACGAATCGACTTGTTGGTGGAGGATTATCAGTCCTGA
AAAATCTTTAAAGCATTGGTATTGAAAGAGAAAGCCGCGATTCAAGCTCG
ACTGGGGCTGGAAGGAAAGGACATTCCTCTGTTGGGTCGTATGACGGAGA
CGGCGCGCAGGGAGGACGACAAGGTGGAGCGTATGCTGGACTGGCGCAAG
AGGTCCTTGGCGACGCGAAGGGTCGCCTTCTACGAAATGATAGAGGCCTT
GCACCGGGACCGGGAGGGACACGTAATGCCACGCAACATGCAGTCGTACT
CAAGCTATTGGCAGGACGAAATGGGCCAATGCCCTCCCCGGATCATCACC
TCCCCAGGTTATTCCGAGCGCTTGCGCCGTCTAAACGCAGCCCTTGAGGA
TGGGGGATGGACGCCTCAGGAGGAGATGTCGCACCTGGCCTTGGGCGGCA
CAGGGGTGGATAGCAGGGAGTTTGTCGCTCTGCAGTGTGAGAGGGTTGAA
GAGGAGAGGGCGCAATGCCCGGACGCGAGTGGCAGCACAATACCATCTCT
TGGCGAGGCAGAGGACCATCATGAACAGGATCAGCTCGATGGTCATCAGC
CGGGCGGGACGGATCGTGCGACAGGGGGCGTGAGAGACCCGAGAAGTGGA
GAAGAGTTATGGAGACGGTGCATGGAGGGAAGGAGACGAATCGACTTGTT
GGTGGAGGATTATCAGTCCTGAAAAATCTTTAAAGCATTGGTATTGAAAG
AGAAAGCCGCGATTCAAGCTCGACTGGGGCTGGAAGGAAAGGACATTCCT
CTGTTGGGTCGTATGACGGAGACGGCGCGCAGGGAGGACGACAAGGTGGA
GCGTATGCTGGACTGGCGCAAGAGGTCCTTGGCGACGCGAAGGGTCGCCT
TCTACGAAATGATAGAGGCCTTGCACCGGGACCGGGAGGGACACGTAATG
CCACGCAACATGCAGTCGTACTCAAGCTATTGGCAGGACGAAATGGGCCA
ATGCCCTCCCCGGATCATCACCTCCCCAGGTTATTCCGAGCGCTTGCGCC
GTCTAAACGCAGCCCTTGAGGATGGGGGATGGACGCCTCAGGAGGAGATG
TCGCACCTGGCCTTGGGCGGCACAGGGGTGGATAGCAGGGAGTTTGTCGC
TCTGCAGTGTGAGAGGGTTGAAGAGGAGAGGGCGCAATGCCCGGACGCGA
GTGGCAGCACAATACCATCTCTTGGCGAGGCAGAGGACCATCATGAACAG
GATCAGCTCGATGGTCATCAGCCGGGCGGGACGGATCGTGCGACAGGGGG
CGTGAGAGACCCGAGAAGTGGAGAAGAGTTATGGAGACGGTGCATGGAGG
GAAGGAGACGAATCGACTTGTTGGTGGAGGATTATCAG

Synonyms

Publications