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Properties
| Property Name | Value |
|---|
| Product | et-dependent rrna methyltransferase spb1 |
| Orig transcript id | gnl|cribi|Naga_100090g18.8849.mrna |
| Orig protein id | gnl|cribi|Naga_100090g18.8849 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1192817..1196044 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna476 ID=rna476|Name=rna476|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
ATGCGGGGACTGAACGAGACAGGTGGACGGAATCGCTTTCGATTTCAAAA
GCTCAAAACCCGCATAAAGCAGGGGCAACGTCGCGTAGATGTGGTCCATA
AGACAAAAAGCCATGACTTTATGTTCGAAAAGAAGGGGCAGTTGGATCCG
AAGCCTGAGGCACAGGGCATGGACGTCGTTCAGGGCATATCCCAGGAGGT
CATTCCGAAGTCGGGGTGTCTTTTCCACGACCACGTGCAAGGGTATTTGG
AGCTCAATACATCTCAAGCGTTTCAGCGCTTGGGAGGTCGGAGCAGAGCT
GTATGCAGGGGGGCATTTTGA back to topprotein sequence of rna476 >rna476-protein ID=rna476-protein|Name=rna476|organism=Nannochloropsis gaditana|type=polypeptide|length=1040bp
MKENLKRKKRHDKDKYYHLAKEQGYRSRAAFKLIQINRKYDFLSKAKVCL
DLCAAPGGWCQVAAKHMPSDSIILGVDLLPIRPIAKVKTLVHDITTPECR
AAVKREMRAHPHVDVVLCDGAPNVGATYDKDAFVQNEIALAALRAATCHL
GPGGTFLTKVYRSQDYNALMWVFNQLFASVQAIKPSSSRQQSAEIFVLCL
RYKAPHSIDPKLLDPAYVFAEMEGGSGDKAISIFSAQYARQKRHRSGYDG
EAGVLLHRKASVTAFLASEDPVQFLSEQSEVVFSPGCTPFFEHPLTTEEV
KSCLADLKVLGKSDFKALLKWRLKMKEHQGRASAGTGEEEARAAAAAVLA
ENTRKRSPEEEEEEIQAEIQKLREERAAKTKRERKKEREKSARMRLRQAY
GMHHDAFDLPDHESIFSLKAIGSAAELKRIRDGEFAEVGEGEGEGGPEEE
EEEEEEEEEEEEKEKGDKGEEEEERRRTARLEAELEESYQAYLSNKNEER
LKGTRAGKRKKTVTAALAGEKISEDLATYDGDLRGYLDLLTGRREGDDEE
SDGTGSDTESGEGEEGEPEEGGEEEEEEEEAGPRRDGGGSGHPLLVDPKV
FEGVERNEVKVARWFSNPVLQSVMAGGEEGEEEEEGGERGEDGIGREESG
EEEDASHDEESRATGVGKATGGKGAVRRKDVVEEVLAAMPRTDKQLRHAK
RMKDRERRAHLAEKKTRAADPDGAVDVEEQAMEVVAAPDPEEEEKRRRRR
ALIKAGMGKVLADGESGGEDGKRRVEQGLQSTFEVVPAGGPPLLSLVPPV
ADSRKYDSDHEDWDDEERARTLAIGTMMLRRSKAKELVDASYNRFAWNDA
GDLPEWFVDDEERHYRPQIPIPKPLLDEMKERFKSLASKPIAKVAEARAR
KKHRLVQRLKQAKSKASAIVSNPDMTERDKMKAIQKAVKGKGDKFSRPDK
VYAVVRRGGSSQAKQKDGASGRARVKLVDKRMKKDTRGMKKAMKAKKGRE
VSGEGLEVNILHAQGCSLLSVKCLPGPLFLRFAQLKTKSE back to topmRNA from alignment at CM002455.1:1192817..1196044+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna476 ID=rna476|Name=rna476|organism=Nannochloropsis gaditana|type=mRNA|length=3228bp|location=Sequence derived from alignment at CM002455.1:1192817..1196044+ (Nannochloropsis gaditana)
GTGGAAAAGAGGTAAATATGTGCTCAATCTAAGCCACTGCTATCTCAACA
GGAGCATAATGAAAGAGAATCTGAAGCGCAAAAAGCGGCACGATAAAGAC
AAGTACTACCACTTGGCGAAAGAGCAAGGGTATCGATCGCGCGCCGCTTT
CAAACTGATACAAATCAACCGCAAATATGATTTCTTGAGCAAAGCCAAAG
TCTGTCTAGACCTGTGCGCTGCCCCTGGGGGGTGGTGTCAGGTGGCCGCC
AAGCACATGCCGTCCGACAGCATTATCCTGGGCGTGGACTTGCTTCCTAT
CCGGCCTATTGCCAAGGTCAAGACTTTAGTGCATGATATCACCACCCCTG
AGTGTCGGGCAGCGGTCAAACGCGAAATGCGCGCCCATCCGCACGTTGAC
GTGGTTTTATGCGACGGTGCTCCCAACGTGGGGGCTACCTACGACAAGGA
TGCTTTTGTCCAGAACGAGATTGCCCTGGCTGCCCTGCGCGCGGCCACCT
GCCACTTGGGCCCCGGAGGCACCTTTCTGACCAAAGTCTACCGCTCCCAG
GACTACAATGCCTTGATGTGGGTCTTTAACCAGCTCTTTGCTTCGGTCCA
GGCCATcaaaccctcctcgtcccggcAGCAGTCCGCGGAGATCTTTGTCC
TCTGTCTCCGGTATAAAGCCCCGCATTCGATCGACCCCAAGCTCCTGGAC
CCCGCCTACGTGTTCGCAGAGATGGAAGGCGGCTCGGGGGACAAGGCGAT
CAGCATTTTCAGCGCCCAGTACGCGCGTCAAAAGCGGCACAGGTCTGGGT
ACgatggggaggcgggggtgcTGTTGCATCGGAAAGCCTCGGTCACGGCG
TTTTTGGCGAGTGAGGACCCGGTCCAGTTTTTGAGCGAACAGAGCGAGGT
AGTCTTCTCCCCGGGCTGCACGCCCTTCTTCGAACATCCCCTGACCACGG
AGGAGGTAAAGAGCTGCCTGGCCGACCTCAAGGTGTTGGGCAAGAGCGAT
TTCAAGGCCCTCCTCAAATGGCGcttgaagatgaaggagcatCAGGGAAG
AGCGTcggcagggacgggggaggaagaggctcgCGCGGCGGCCGCTGCCG
TATTGGCCGAAAATACACGGAAGCGGAGcccagaggaggaagaggaggaa
atccaGGCTGAAATTCAGAAACTCCGGGAAGAGCGAGCCGCCAAGAccaa
gagggagcggaagaaggAACGGGAGAAGTCAGCTCGGATGCGTCTGCGGC
AGGCGTACGGCATGCACCACGACGCGTTCGATCTCCCTGACCATGAGTCG
ATTTTTTCCCTGAAAGCAATCGGGAGTGCCGCCGAGCTGAAGAGGATTCG
GGACGGAGAGTTTGCGGAGGttggtgagggggagggggagggtgggccgg
aggaggaagaggaggaggaggaggaggaggaggaggaggaggagaaggag
aagggggacaaaggggaggaggaggaggagaggaggcgaacgGCCAGGCT
TGAagcggagctggaggagagctATCAGGCATACCTGTCAAACAAGAACG
AAGAGAGGTTGAAGgggacgcgggcggggaaaCGGAAGAAAACGGTcacg
gcggccttggcgggggaaaagatcTCGGAGGACCTGGCCACCTACGATGG
GGACCTACGAGGTTACCTGGACCTGttgactgggaggagggaaggagatg
acgaggagagcgATGGGACGGGGAGCGACAcggagagcggggagggagag
gaaggcgagccggaggagggcggggaggaggaggaggaggaggaggaagc
ggggccAAGgcgtgatggagggggaagtggacACCCTCTTTTGGTGGATC
CCAAGGTGTTtgagggcgtggagaggaaTGAGGTGAAGGTGGCTCGCTGG
TTCAGTAACCCGGTCTTGCAGAGCGTgatggcgggaggggaggaggggga
ggaggaggaagaaggtggggaaaggggagaggatgggatagggagggagg
agagcggggaggaggaagatgcgAGCCACgacgaggaaagcagggccacg
ggggtggggaaagcgacgggagggaagggggcagtgaggaggaaggatgt
ggtggaggaggtcctgGCCGCCATGCCGCGGACGGACAAGCAGCTCCGAC
ACGCGAAGCGGATGAAGGACCGGGAGCGTCGGGCGCACTTGGCGGAGAAA
AAGACGCGGGCCGCAGACCCGGACGGGgccgtggacgtggaggagcaggc
gatggaggtggtggccgcgCCGGaccccgaggaggaggagaaaaggaggc
ggcgacgagCGTTGATCAaggcagggatggggaaagtCCTGGCGGacggg
gaaagcgggggcgaggacgggaagcgAAGGGTGGAGCAGGGTCTTCAGTC
GACGTTCGAAGTGGTGCCTGCGGGGGGGCCGCCCTTGTTGTCCCTTGTGC
CCCCCGTGGCAGACTCGCGCAAGTACGACTCTGATCACGAGGATTGGGAC
GACGAAGAGCGAGCCCGGACATTGGCGATCGGGACGATGATGTTGCGGCG
GAGCAAGGCCAAGGAGTTGGTGGATGCCTCTTACAACCGCTTTGCCTGGA
ACGACGCGGGAGACTTGCCCGAATGGTtcgtggacgacgaggagcgACAC
TACCGACCGCAGATCCCCATTCCGAAGCCCTTGTTGGACGAGATGAAGGA
GCGCTTCAAAAGCTTGGCCAGCAAGCCGATTGCGAAAGTGGCGGAGGCCC
GGGCTCGGAAAAAGCATCGCTTGGTGCAGCGGTTGAAGCAGGCTAAGTCC
AAGGCGTCGGCCATCGTGAGCAACCCCGACATGACGGAGCGAGACAAAAT
GAAGGCCATCCAGAAGGCtgtgaaggggaaaggggacaaATTTTCACGGC
CAGACAAGGTCTACGCGGTTGTGCGTCGTGGGGGAAGCTCCCAGGCCAAG
CAAAAGGACGGGGCCTCGGGACGCGCTCGTGTCAAATTGGTAGAtaagag
gatgaagaaagacACTCGGGGCATGAAGAAGGCGATGAAAGCCAAGAagg
gacgtggtggaaaaggaggagggagcaaagcGGCAAGAGCAGGAAAACGG
AAGAGGTAAGCGGTGAAGGACTAGAAGTTAATATACTACATGCACAAGGG
TGCAGTCTCCTTTCTGTGAAATGCTTACCTGGGCCACTTTTCCTTCGTTT
CGCACAACTTAAAACGAAAAGTGAGTAG back to topCoding sequence (CDS) from alignment at CM002455.1:1192817..1196044+ >rna476 ID=rna476|Name=rna476|organism=Nannochloropsis gaditana|type=CDS|length=6246bp|location=Sequence derived from alignment at CM002455.1:1192817..1196044+ (Nannochloropsis gaditana)
ATGAAAGAGAATCTGAAGCGCAAAAAGCGGCACGATAAAGACAAGTACTA
CCACTTGGCGAAAGAGCAAGGGTATCGATCGCGCGCCGCTTTCAAACTGA
TACAAATCAACCGCAAATATGATTTCTTGAGCAAAGCCAAAGTCTGTCTA
GACCTGTGCGCTGCCCCTGGGGGGTGGTGTCAGGTGGCCGCCAAGCACAT
GCCGTCCGACAGCATTATCCTGGGCGTGGACTTGCTTCCTATCCGGCCTA
TTGCCAAGGTCAAGACTTTAGTGCATGATATCACCACCCCTGAGTGTCGG
GCAGCGGTCAAACGCGAAATGCGCGCCCATCCGCACGTTGACGTGGTTTT
ATGCGACGGTGCTCCCAACGTGGGGGCTACCTACGACAAGGATGCTTTTG
TCCAGAACGAGATTGCCCTGGCTGCCCTGCGCGCGGCCACCTGCCACTTG
GGCCCCGGAGGCACCTTTCTGACCAAAGTCTACCGCTCCCAGGACTACAA
TGCCTTGATGTGGGTCTTTAACCAGCTCTTTGCTTCGGTCCAGGCCATca
aaccctcctcgtcccggcAGCAGTCCGCGGAGATCTTTGTCCTCTGTCTC
CGGTATAAAGCCCCGCATTCGATCGACCCCAAGCTCCTGGACCCCGCCTA
CGTGTTCGCAGAGATGGAAGGCGGCTCGGGGGACAAGGCGATCAGCATTT
TCAGCGCCCAGTACGCGCGTCAAAAGCGGCACAGGTCTGGGTACgatggg
gaggcgggggtgcTGTTGCATCGGAAAGCCTCGGTCACGGCGTTTTTGGC
GAGTGAGGACCCGGTCCAGTTTTTGAGCGAACAGAGCGAGGTAGTCTTCT
CCCCGGGCTGCACGCCCTTCTTCGAACATCCCCTGACCACGGAGGAGGTA
AAGAGCTGCCTGGCCGACCTCAAGGTGTTGGGCAAGAGCGATTTCAAGGC
CCTCCTCAAATGGCGcttgaagatgaaggagcatCAGGGAAGAGCGTcgg
cagggacgggggaggaagaggctcgCGCGGCGGCCGCTGCCGTATTGGCC
GAAAATACACGGAAGCGGAGcccagaggaggaagaggaggaaatccaGGC
TGAAATTCAGAAACTCCGGGAAGAGCGAGCCGCCAAGAccaagagggagc
ggaagaaggAACGGGAGAAGTCAGCTCGGATGCGTCTGCGGCAGGCGTAC
GGCATGCACCACGACGCGTTCGATCTCCCTGACCATGAGTCGATTTTTTC
CCTGAAAGCAATCGGGAGTGCCGCCGAGCTGAAGAGGATTCGGGACGGAG
AGTTTGCGGAGGttggtgagggggagggggagggtgggccggaggaggaa
gaggaggaggaggaggaggaggaggaggaggaggagaaggagaaggggga
caaaggggaggaggaggaggagaggaggcgaacgGCCAGGCTTGAagcgg
agctggaggagagctATCAGGCATACCTGTCAAACAAGAACGAAGAGAGG
TTGAAGgggacgcgggcggggaaaCGGAAGAAAACGGTcacggcggcctt
ggcgggggaaaagatcTCGGAGGACCTGGCCACCTACGATGGGGACCTAC
GAGGTTACCTGGACCTGttgactgggaggagggaaggagatgacgaggag
agcgATGGGACGGGGAGCGACAcggagagcggggagggagaggaaggcga
gccggaggagggcggggaggaggaggaggaggaggaggaagcggggccAA
GgcgtgatggagggggaagtggacACCCTCTTTTGGTGGATCCCAAGGTG
TTtgagggcgtggagaggaaTGAGGTGAAGGTGGCTCGCTGGTTCAGTAA
CCCGGTCTTGCAGAGCGTgatggcgggaggggaggagggggaggaggagg
aagaaggtggggaaaggggagaggatgggatagggagggaggagagcggg
gaggaggaagatgcgAGCCACgacgaggaaagcagggccacgggggtggg
gaaagcgacgggagggaagggggcagtgaggaggaaggatgtggtggagg
aggtcctgGCCGCCATGCCGCGGACGGACAAGCAGCTCCGACACGCGAAG
CGGATGAAGGACCGGGAGCGTCGGGCGCACTTGGCGGAGAAAAAGACGCG
GGCCGCAGACCCGGACGGGgccgtggacgtggaggagcaggcgatggagg
tggtggccgcgCCGGaccccgaggaggaggagaaaaggaggcggcgacga
gCGTTGATCAaggcagggatggggaaagtCCTGGCGGacggggaaagcgg
gggcgaggacgggaagcgAAGGGTGGAGCAGGGTCTTCAGTCGACGTTCG
AAGTGGTGCCTGCGGGGGGGCCGCCCTTGTTGTCCCTTGTGCCCCCCGTG
GCAGACTCGCGCAAGTACGACTCTGATCACGAGGATTGGGACGACGAAGA
GCGAGCCCGGACATTGGCGATCGGGACGATGATGTTGCGGCGGAGCAAGG
CCAAGGAGTTGGTGGATGCCTCTTACAACCGCTTTGCCTGGAACGACGCG
GGAGACTTGCCCGAATGGTtcgtggacgacgaggagcgACACTACCGACC
GCAGATCCCCATTCCGAAGCCCTTGTTGGACGAGATGAAGGAGCGCTTCA
AAAGCTTGGCCAGCAAGCCGATTGCGAAAGTGGCGGAGGCCCGGGCTCGG
AAAAAGCATCGCTTGGTGCAGCGGTTGAAGCAGGCTAAGTCCAAGGCGTC
GGCCATCGTGAGCAACCCCGACATGACGGAGCGAGACAAAATGAAGGCCA
TCCAGAAGGCtgtgaaggggaaaggggacaaATTTTCACGGCCAGACAAG
GTCTACGCGGTTGTGCGTCGTGGGGGAAGCTCCCAGGCCAAGCAAAAGGA
CGGGGCCTCGGGACGCGCTCGTGTCAAATTGGTAGAtaagaggatgaaga
aagacACTCGGGGCATGAAGAAGGCGATGAAAGCCAAGAagggacgtgAG
GTAAGCGGTGAAGGACTAGAAGTTAATATACTACATGCACAAGGGTGCAG
TCTCCTTTCTGTGAAATGCTTACCTGGGCCACTTTTCCTTCGTTTCGCAC
AACTTAAAACGAAAAGTGAGTAGATGAAAGAGAATCTGAAGCGCAAAAAG
CGGCACGATAAAGACAAGTACTACCACTTGGCGAAAGAGCAAGGGTATCG
ATCGCGCGCCGCTTTCAAACTGATACAAATCAACCGCAAATATGATTTCT
TGAGCAAAGCCAAAGTCTGTCTAGACCTGTGCGCTGCCCCTGGGGGGTGG
TGTCAGGTGGCCGCCAAGCACATGCCGTCCGACAGCATTATCCTGGGCGT
GGACTTGCTTCCTATCCGGCCTATTGCCAAGGTCAAGACTTTAGTGCATG
ATATCACCACCCCTGAGTGTCGGGCAGCGGTCAAACGCGAAATGCGCGCC
CATCCGCACGTTGACGTGGTTTTATGCGACGGTGCTCCCAACGTGGGGGC
TACCTACGACAAGGATGCTTTTGTCCAGAACGAGATTGCCCTGGCTGCCC
TGCGCGCGGCCACCTGCCACTTGGGCCCCGGAGGCACCTTTCTGACCAAA
GTCTACCGCTCCCAGGACTACAATGCCTTGATGTGGGTCTTTAACCAGCT
CTTTGCTTCGGTCCAGGCCATcaaaccctcctcgtcccggcAGCAGTCCG
CGGAGATCTTTGTCCTCTGTCTCCGGTATAAAGCCCCGCATTCGATCGAC
CCCAAGCTCCTGGACCCCGCCTACGTGTTCGCAGAGATGGAAGGCGGCTC
GGGGGACAAGGCGATCAGCATTTTCAGCGCCCAGTACGCGCGTCAAAAGC
GGCACAGGTCTGGGTACgatggggaggcgggggtgcTGTTGCATCGGAAA
GCCTCGGTCACGGCGTTTTTGGCGAGTGAGGACCCGGTCCAGTTTTTGAG
CGAACAGAGCGAGGTAGTCTTCTCCCCGGGCTGCACGCCCTTCTTCGAAC
ATCCCCTGACCACGGAGGAGGTAAAGAGCTGCCTGGCCGACCTCAAGGTG
TTGGGCAAGAGCGATTTCAAGGCCCTCCTCAAATGGCGcttgaagatgaa
ggagcatCAGGGAAGAGCGTcggcagggacgggggaggaagaggctcgCG
CGGCGGCCGCTGCCGTATTGGCCGAAAATACACGGAAGCGGAGcccagag
gaggaagaggaggaaatccaGGCTGAAATTCAGAAACTCCGGGAAGAGCG
AGCCGCCAAGAccaagagggagcggaagaaggAACGGGAGAAGTCAGCTC
GGATGCGTCTGCGGCAGGCGTACGGCATGCACCACGACGCGTTCGATCTC
CCTGACCATGAGTCGATTTTTTCCCTGAAAGCAATCGGGAGTGCCGCCGA
GCTGAAGAGGATTCGGGACGGAGAGTTTGCGGAGGttggtgagggggagg
gggagggtgggccggaggaggaagaggaggaggaggaggaggaggaggag
gaggaggagaaggagaagggggacaaaggggaggaggaggaggagaggag
gcgaacgGCCAGGCTTGAagcggagctggaggagagctATCAGGCATACC
TGTCAAACAAGAACGAAGAGAGGTTGAAGgggacgcgggcggggaaaCGG
AAGAAAACGGTcacggcggccttggcgggggaaaagatcTCGGAGGACCT
GGCCACCTACGATGGGGACCTACGAGGTTACCTGGACCTGttgactggga
ggagggaaggagatgacgaggagagcgATGGGACGGGGAGCGACAcggag
agcggggagggagaggaaggcgagccggaggagggcggggaggaggagga
ggaggaggaggaagcggggccAAGgcgtgatggagggggaagtggacACC
CTCTTTTGGTGGATCCCAAGGTGTTtgagggcgtggagaggaaTGAGGTG
AAGGTGGCTCGCTGGTTCAGTAACCCGGTCTTGCAGAGCGTgatggcggg
aggggaggagggggaggaggaggaagaaggtggggaaaggggagaggatg
ggatagggagggaggagagcggggaggaggaagatgcgAGCCACgacgag
gaaagcagggccacgggggtggggaaagcgacgggagggaagggggcagt
gaggaggaaggatgtggtggaggaggtcctgGCCGCCATGCCGCGGACGG
ACAAGCAGCTCCGACACGCGAAGCGGATGAAGGACCGGGAGCGTCGGGCG
CACTTGGCGGAGAAAAAGACGCGGGCCGCAGACCCGGACGGGgccgtgga
cgtggaggagcaggcgatggaggtggtggccgcgCCGGaccccgaggagg
aggagaaaaggaggcggcgacgagCGTTGATCAaggcagggatggggaaa
gtCCTGGCGGacggggaaagcgggggcgaggacgggaagcgAAGGGTGGA
GCAGGGTCTTCAGTCGACGTTCGAAGTGGTGCCTGCGGGGGGGCCGCCCT
TGTTGTCCCTTGTGCCCCCCGTGGCAGACTCGCGCAAGTACGACTCTGAT
CACGAGGATTGGGACGACGAAGAGCGAGCCCGGACATTGGCGATCGGGAC
GATGATGTTGCGGCGGAGCAAGGCCAAGGAGTTGGTGGATGCCTCTTACA
ACCGCTTTGCCTGGAACGACGCGGGAGACTTGCCCGAATGGTtcgtggac
gacgaggagcgACACTACCGACCGCAGATCCCCATTCCGAAGCCCTTGTT
GGACGAGATGAAGGAGCGCTTCAAAAGCTTGGCCAGCAAGCCGATTGCGA
AAGTGGCGGAGGCCCGGGCTCGGAAAAAGCATCGCTTGGTGCAGCGGTTG
AAGCAGGCTAAGTCCAAGGCGTCGGCCATCGTGAGCAACCCCGACATGAC
GGAGCGAGACAAAATGAAGGCCATCCAGAAGGCtgtgaaggggaaagggg
acaaATTTTCACGGCCAGACAAGGTCTACGCGGTTGTGCGTCGTGGGGGA
AGCTCCCAGGCCAAGCAAAAGGACGGGGCCTCGGGACGCGCTCGTGTCAA
ATTGGTAGAtaagaggatgaagaaagacACTCGGGGCATGAAGAAGGCGA
TGAAAGCCAAGAagggacgtgAGGTAAGCGGTGAAGGACTAGAAGTTAAT
ATACTACATGCACAAGGGTGCAGTCTCCTTTCTGTGAAATGCTTACCTGG
GCCACTTTTCCTTCGTTTCGCACAACTTAAAACGAAAAGTGAGTAG back to top
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