rna4747, rna4747 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4747
Unique Name	rna4747
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1204
Alignment location	CM002464.1:242747..244455 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100469g3.6988.mrna
Orig protein id	gnl\|cribi\|Naga_100469g3.6988
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:242747..244455 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100469g3	gene4584	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4747	rna4747-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25940.1	cds4735	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:242747..244455+
coding sequence from alignment at CM002464.1:242747..244455+

mRNA sequence

>rna4747 ID=rna4747|Name=rna4747|organism=Nannochloropsis gaditana|type=mRNA|length=1204bp
CTGTCAATTTGAATGGTGAGGGCGTGGCTCGTTGCTGAGAGGACGCATTG
ATTGCCGAGTAGGCAGGGGCACAAGCAGAGGTGCTGCTAGCTCTGGAGGG
CGAGCAAGTCGACCTTGATGCATCAAATTTTCGACTTGGGGGGAAAAAGA
TTCCCCAAAAAACATTTCTGGCGCAAACAAGGTTGAGACAGACCCCTTTG
AATAAACGTTTGAGACACTATTCTATTTTCGACATGCCTCCTGTGCATGC
ATTTTGTCCACTCCACCTGTTGTGCTTCCTCTTGTGTTCGCCGCTTGTCC
CAAGCACCCTAATGAAAGAGAAGTGAAAGGAATTAGCAATCACTGTCATT
CTGATTGGACGAGGTTCTCCGCAAATACCTGCACACACAGGTAGTGACCG
CTCTGTCGTGAAGATGAGCGCAAGCGCAATGGATGAGGCTTTGGCTTCGT
ACAAAGCCTTGGAAGCGGATACTCAGGAGCTCATGGCCCGTCGACAAGTT
ACTCTGCAGCAGGCGAATGAAAACGGGATGGTGCAGCAGGAATTGGATGG
TTTGGAAGCGGGCGAGAATGTCTACAAGATGATGGGCCCAGTGCTTCTCC
GCGTTGAGTTGGAAGACGCGAAGCAAAATGTGGCCAAACGGCTGGACTTG
ATCAAGAGTACAATGGAGGATTTCGATCAAAAAATTCAGGGGAAGCAGAA
GGATGCGGAAGAGCTAGGCACCAAGATTATGACCATGCAACAGGAACTGC
AAGCGAAGACCGCCGACGCAGCCAAGGCCGCCGCTCAGGACGCATTGAAA
GGTGTGATGGCATGATAGAGGTCGACAAAGAAAAAAAAACTTCGAAACAA
TTGTACTTGGTGTTAATGGGACAAATAAATTGGTAGACTTCCATCTAGTT
GGAACTAGTCTGACCTGCGTTTTCAAACGAGCAATATTAGAAGGCATGCA
TGCCATAATATTAACAAAGTATCATGTGACTACTTTGCATGAAAAAACAA
GGGAAGTACCGAACCTTGAAGACATGAAAAGTGGACATTCCATGTCGAGT
GCTTTTCAGGATCCCGGTCCCAGCATTTCAAAAATTCAAACATTAAACGG
CTGAAGAACTACAGCCTCCACCCCAGTGTCGTGCATGTCTTTTGCGTCTT
TTCGTTGCGGGTTCATTGACCGCACATCTAAAATGTGACGAGGCATATTA
TTTA

protein sequence of rna4747

>rna4747-protein ID=rna4747-protein|Name=rna4747|organism=Nannochloropsis gaditana|type=polypeptide|length=226bp
MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPRE
GPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVL
EAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSA
SYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTG
ATVAVGGAPATAIKNAMSLVAEGMKA

mRNA from alignment at CM002464.1:242747..244455+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4747 ID=rna4747|Name=rna4747|organism=Nannochloropsis gaditana|type=mRNA|length=1709bp|location=Sequence derived from alignment at CM002464.1:242747..244455+ (Nannochloropsis gaditana)
GAGCTAGCAGCACCTCTGCTTGTGCCCCTGCCTACTCGGCAATCAATGCG
TCCTCTCAGCAACGAGCCACGCCCTCACCATTCAAATTGACAGCGCAATC
GACCATGCTGGTCCGGGCTTTCCAAGGAGCTTTGCGACGGCGGGCGGTCC
TCCATAATTTGCGGGCCTCAGGCGCTCTTGCTTCTATACCGTCTCGGACC
TTGTCTGGGACGCCTGTCACGGTACCTCAACACGCATCCTCCAATCTCAT
TTGATTCCCCTCGCATCGATGAAACGAAGCATATGATACGATGAACTGGT
CTTAGGTGTGATGTCCTCACACAGGACTTCCGAAAAGGACACGAGACGTG
TGCAGGCAACTCTaatccccctctccccttttgGCTCtaccctttttttc
ccaatCACACTTTTATACCCTCGGCTTGATTTCAGGAAACAGATGAGTAC
ACTATATTTCCACGAGAGGGTCCTGGGCTTGACTACAAGCTGAATTGGTC
GTTAAACGGTGACGATGTCACGCCGGGAGGCAATGCGTACCGTAACTTGG
ATGCGGCGGCGTTGCAGCAGGGAGCGAAAGGGGACAAAGCGCCTCGAAGC
GGGGCAGACAAGGTGTTGGAGGCAGGAGATTCGGTTCCCTTCGAAACATT
TGACCTCCATTTGGCGGATGTGAAGGCGGCACTGGTGAGTTTGTTGAAAT
ATGAAGACAGCAATAAGAAAAGCAGGGGGCCGTGAGGAGGATATTGAAGT
GCAGCTGACGATGTCGTGAGAGGAGTTGCGTGGCAGCGGGTAAAGAAAGG
CTGTGACTACGAAATGCACTTGTTTGTAGGGCATGTTAACTCCCCCCGCA
CATTCTAGTACACCCCCTCTAATGCCATgtcccttgctcctccttgcctg
ctgGCCTTACACCCATCAACtcaaggagaaggccagCGACTTATACGTCG
AAGACGGGGCGGTCAAGGGTGGATCCAACTTCAACATTCGGGTCATCACC
GACAGCGCTTCGTACGCcctggcggccaaggcgttGTTGGATCAGTCCAA
GGTGTCCGGATGGCCCTTCGAGAAGGCCGTGAACGTGTATGCCGCGGGAG
GAGCGAAGCCCTTCGTGGGCGTCATGttcgcgggggggaaggaaggaaat
gtgACAGGTATGGAAAAAGGGTGGGGGGGTAGGAAGGTGCTGGTGTGGAT
GCGATGCCAGCGAGTAGGCCATCCGAGGGATCGGGAGGGGCCGGAGTCCT
GCgcgttgccctccctcttcttccttgatGTCCCGAGCGGGAAGTTAAGA
TCTTACATTATCGGTGTTTGAACATTACAGGTGCGACCGTAGCGGTGGGC
GGCGCTCCTGCTACAGCGATCAAGAATGCGATGAGCTTGGTCGCCGAAGG
TATGAAAGCTTGAAATTTTGATtttgaagggaagggcgtTGCAAGGATGA
ACGTGCCTCAAGCGGACAGGAGGGCTGCGGGCGCATTAAAGGGGCCATTC
TTTTGGGCGGCTGGGTCACTGCTTTTTCAGTGGATGGAATGCGTACTTTA
CGCTGCTGAGAAGAAGCGAAGACTGCAGGGGACCATGAAAGGATAGAACG
AAGGATACGATACAAGCAAATGGAAAAAGAGGTCGCGTTCCTTGTGAGCA
AGTCTCACCTTGCGGGTTTAATCCTTCGCTTTCGTCATCCATACCTATTC
TATACTACT

Coding sequence (CDS) from alignment at CM002464.1:242747..244455+

>rna4747 ID=rna4747|Name=rna4747|organism=Nannochloropsis gaditana|type=CDS|length=2724bp|location=Sequence derived from alignment at CM002464.1:242747..244455+ (Nannochloropsis gaditana)
ATGCTGGTCCGGGCTTTCCAAGGAGCTTTGCGACGGCGGGCGGTCCTCCA
TAATTTGCGGGCCTCAGGCGCTCTTGCTTCTATACCGTCTCGGACCTTGT
CTGGGACGCCTGTCACGGAAACAGATGAGTACACTATATTTCCACGAGAG
GGTCCTGGGCTTGACTACAAGCTGAATTGGTCGTTAAACGGTGACGATGT
CACGCCGGGAGGCAATGCGTACCGTAACTTGGATGCGGCGGCGTTGCAGC
AGGGAGCGAAAGGGGACAAAGCGCCTCGAAGCGGGGCAGACAAGGTGTTG
GAGGCAGGAGATTCGGTTCCCTTCGAAACATTTGACCTCCATTTGGCGGA
TGTGAAGGCGGCACTGgagaaggccagCGACTTATACGTCGAAGACGGGG
CGGTCAAGGGTGGATCCAACTTCAACATTCGGGTCATCACCGACAGCGCT
TCGTACGCcctggcggccaaggcgttGTTGGATCAGTCCAAGGTGTCCGG
ATGGCCCTTCGAGAAGGCCGTGAACGTGTATGCCGCGGGAGGAGCGAAGC
CCTTCGTGGGCGTCATGttcgcgggggggaaggaaggaaatgtgACAGGT
GCGACCGTAGCGGTGGGCGGCGCTCCTGCTACAGCGATCAAGAATGCGAT
GAGCTTGGTCGCCGAAGGTATGAAAGCTTGAATGCTGGTCCGGGCTTTCC
AAGGAGCTTTGCGACGGCGGGCGGTCCTCCATAATTTGCGGGCCTCAGGC
GCTCTTGCTTCTATACCGTCTCGGACCTTGTCTGGGACGCCTGTCACGGA
AACAGATGAGTACACTATATTTCCACGAGAGGGTCCTGGGCTTGACTACA
AGCTGAATTGGTCGTTAAACGGTGACGATGTCACGCCGGGAGGCAATGCG
TACCGTAACTTGGATGCGGCGGCGTTGCAGCAGGGAGCGAAAGGGGACAA
AGCGCCTCGAAGCGGGGCAGACAAGGTGTTGGAGGCAGGAGATTCGGTTC
CCTTCGAAACATTTGACCTCCATTTGGCGGATGTGAAGGCGGCACTGgag
aaggccagCGACTTATACGTCGAAGACGGGGCGGTCAAGGGTGGATCCAA
CTTCAACATTCGGGTCATCACCGACAGCGCTTCGTACGCcctggcggcca
aggcgttGTTGGATCAGTCCAAGGTGTCCGGATGGCCCTTCGAGAAGGCC
GTGAACGTGTATGCCGCGGGAGGAGCGAAGCCCTTCGTGGGCGTCATGtt
cgcgggggggaaggaaggaaatgtgACAGGTGCGACCGTAGCGGTGGGCG
GCGCTCCTGCTACAGCGATCAAGAATGCGATGAGCTTGGTCGCCGAAGGT
ATGAAAGCTTGAATGCTGGTCCGGGCTTTCCAAGGAGCTTTGCGACGGCG
GGCGGTCCTCCATAATTTGCGGGCCTCAGGCGCTCTTGCTTCTATACCGT
CTCGGACCTTGTCTGGGACGCCTGTCACGGAAACAGATGAGTACACTATA
TTTCCACGAGAGGGTCCTGGGCTTGACTACAAGCTGAATTGGTCGTTAAA
CGGTGACGATGTCACGCCGGGAGGCAATGCGTACCGTAACTTGGATGCGG
CGGCGTTGCAGCAGGGAGCGAAAGGGGACAAAGCGCCTCGAAGCGGGGCA
GACAAGGTGTTGGAGGCAGGAGATTCGGTTCCCTTCGAAACATTTGACCT
CCATTTGGCGGATGTGAAGGCGGCACTGgagaaggccagCGACTTATACG
TCGAAGACGGGGCGGTCAAGGGTGGATCCAACTTCAACATTCGGGTCATC
ACCGACAGCGCTTCGTACGCcctggcggccaaggcgttGTTGGATCAGTC
CAAGGTGTCCGGATGGCCCTTCGAGAAGGCCGTGAACGTGTATGCCGCGG
GAGGAGCGAAGCCCTTCGTGGGCGTCATGttcgcgggggggaaggaagga
aatgtgACAGGTGCGACCGTAGCGGTGGGCGGCGCTCCTGCTACAGCGAT
CAAGAATGCGATGAGCTTGGTCGCCGAAGGTATGAAAGCTTGAATGCTGG
TCCGGGCTTTCCAAGGAGCTTTGCGACGGCGGGCGGTCCTCCATAATTTG
CGGGCCTCAGGCGCTCTTGCTTCTATACCGTCTCGGACCTTGTCTGGGAC
GCCTGTCACGGAAACAGATGAGTACACTATATTTCCACGAGAGGGTCCTG
GGCTTGACTACAAGCTGAATTGGTCGTTAAACGGTGACGATGTCACGCCG
GGAGGCAATGCGTACCGTAACTTGGATGCGGCGGCGTTGCAGCAGGGAGC
GAAAGGGGACAAAGCGCCTCGAAGCGGGGCAGACAAGGTGTTGGAGGCAG
GAGATTCGGTTCCCTTCGAAACATTTGACCTCCATTTGGCGGATGTGAAG
GCGGCACTGgagaaggccagCGACTTATACGTCGAAGACGGGGCGGTCAA
GGGTGGATCCAACTTCAACATTCGGGTCATCACCGACAGCGCTTCGTACG
CcctggcggccaaggcgttGTTGGATCAGTCCAAGGTGTCCGGATGGCCC
TTCGAGAAGGCCGTGAACGTGTATGCCGCGGGAGGAGCGAAGCCCTTCGT
GGGCGTCATGttcgcgggggggaaggaaggaaatgtgACAGGTGCGACCG
TAGCGGTGGGCGGCGCTCCTGCTACAGCGATCAAGAATGCGATGAGCTTG
GTCGCCGAAGGTATGAAAGCTTGA

Synonyms

Publications