EWM25940.1, cds4735 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM25940.1
Unique Name	cds4735
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002464.1:242851..242967 +
Alignment location	CM002464.1:243182..243430 +
Alignment location	CM002464.1:243672..243903 +
Alignment location	CM002464.1:244077..244159 +

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM25940.1
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100469g3.6988.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:242851..242967 +
CM002464.1	supercontig	CM002464.1:243182..243430 +
CM002464.1	supercontig	CM002464.1:243672..243903 +
CM002464.1	supercontig	CM002464.1:244077..244159 +

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
GO annotation for N. gaditana B31	2020-04-08
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

The following terms have been associated with this CDS:

Vocabulary: **Biological Process**
Term	Definition
GO:0009058	biosynthetic process
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity
GO:0000166	nucleotide binding

Homology

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|585107812|gb|EWM25940.1| (uncharacterized protein Naga_100469g3 [Nannochloropsis gaditana])

HSP 1 Score: 453.366 bits (1165), Expect = 3.946e-161
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0

Query:    1 MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA 226
            MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA
Sbjct:    1 MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA 226

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|553194773|ref|XP_005856028.1| (hypothetical protein NGA_0514700 [Nannochloropsis gaditana CCMP526] >gi|422293020|gb|EKU20321.1| hypothetical protein NGA_0514700 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 436.802 bits (1122), Expect = 3.314e-154
Identity = 226/254 (88.98%), Postives = 226/254 (88.98%), Query Frame = 0

Query:    1 MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAAL----------------------------EKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA 226
            MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAAL                            EKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA
Sbjct:    1 MLVRAFQGALRRRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALELRGSGTPPLMPCPLLLLACWPYTHQLKEKASDLYVEDGAVKGGSNFNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGMKA 254

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|570977313|gb|ETP38941.1| (hypothetical protein F442_13555 [Phytophthora parasitica P10297])

HSP 1 Score: 85.5001 bits (210), Expect = 7.453e-16
Identity = 73/230 (31.74%), Postives = 106/230 (46.09%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGG-----AKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            L ++FQ ALR    RRA+LHN   +   A               D++ + FP+E  GL+ + NWSL  DDVTP G+A+RNL    L + AK  K P      + E   S+ F  F+     V   L     LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A G      +P   ++     EG      V  G A  + IK+++ L
Sbjct:    3 LRQSFQ-ALRSVAARRALLHNFSVAPHAA---------------DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELAKQQK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVHAARPIVVYVATGGEFKDQQPQAQLLVDNDDEGATFVKVVITGAADLSTIKDSIGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|953502961|emb|CEG35729.1| (hypothetical protein PHYSODRAFT_348042 [Plasmopara halstedii])

HSP 1 Score: 85.1149 bits (209), Expect = 7.908e-16
Identity = 62/197 (31.47%), Postives = 99/197 (50.25%), Query Frame = 0

Query:   31 RTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAA-----GGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            R  S +P    D++ + FP E  GL+ + NWSL GDDVTP G+A+RNL  + L++ AK +K P   + K+ E   ++ F TF+     V   L    +L+ +DGAV    +    +RVI+DS   AL A+ LL +  +      + + VY A      G +P   ++     +G      V  G A  + +++A+ L
Sbjct:   21 RRFSVSP-HAADKFVVDFPEEHEGLNIEFNWSLAGDDVTPHGDAFRNLSWSKLEELAKHEK-PAGKSVKIEEVDVNIVFNTFEGLYEKVTEHLSTEPNLFTQDGAVGSFKDDRTRVRVISDSPLVALFAQNLLVRVPIKDPHAARPIVVYVATGGEFKGKEPQAQLLIDNDDDGATFVKVVITGAANLSTVQDAVGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|566018139|gb|ETI41050.1| (hypothetical protein F443_13692 [Phytophthora parasitica P1569] >gi|567984198|gb|ETL34573.1| hypothetical protein L916_13244 [Phytophthora parasitica] >gi|570945538|gb|ETP10795.1| hypothetical protein F441_13633 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 81.6481 bits (200), Expect = 1.416e-14
Identity = 72/230 (31.30%), Postives = 105/230 (45.65%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGG-----AKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            L ++FQ ALR    RRA+L N   +   A               D++ + FP+E  GL+ + NWSL  DDVTP G+A+RNL    L + AK  K P      + E   S+ F  F+     V   L     LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A G      +P   ++     EG      V  G A  + IK+++ L
Sbjct:    3 LRQSFQ-ALRSVAARRALLRNFSVAPHAA---------------DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELAKQQK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVHAARPIVVYVATGGEFKDQQPQAQLLVDNDDEGATFVKVVITGAADLSTIKDSIGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|675171389|ref|XP_008894579.1| (hypothetical protein PPTG_03645 [Phytophthora parasitica INRA-310] >gi|568106068|gb|ETN20704.1| hypothetical protein PPTG_03645 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 1.472e-14
Identity = 72/230 (31.30%), Postives = 105/230 (45.65%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGG-----AKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            L ++FQ ALR    RRA+L N   +   A               D++ + FP+E  GL+ + NWSL  DDVTP G+A+RNL    L + AK  K P      + E   S+ F  F+     V   L     LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A G      +P   ++     EG      V  G A  + IK+++ L
Sbjct:    3 LRQSFQ-ALRSVAARRALLRNFSVAPHAA---------------DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELAKQQK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVHAARPIVVYVATGGEFKDQQPQAQLLVDNDDEGATFVKVVITGAADLSTIKDSIGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|301109014|ref|XP_002903588.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097312|gb|EEY55364.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 81.2629 bits (199), Expect = 1.976e-14
Identity = 71/234 (30.34%), Postives = 108/234 (46.15%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTIFPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGGAK-----PFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSLVAEGM 224
            L ++FQ ALR    RRA+L N   +   A               D++  FP+E  GL+ + NWSL  DDVTP G+A+RNL    L++ AK +K P      + E   S+ F  F+     V   L    +LY +DGA     +    +RVI+DS   AL A++LL +  +      + + VY A G +     P   ++     EG      V  G A  + IK+++ L  + +
Sbjct:    3 LRQSFQ-ALRSVTARRALLRNFSVAPHAA---------------DKFE-FPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLEELAKQEK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPNLYTQDGAAGSFQDDRTRVRVISDSPVVALFAQSLLVRVPIKDPHAARPIVVYVATGGEFKDKDPQAQLLMDNDDEGATFVKVVITGAADLSTIKDSIGLAKKKL 218

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|970653921|gb|KUF92314.1| (Acidic elicitin A1 [Phytophthora nicotianae])

HSP 1 Score: 80.4925 bits (197), Expect = 3.808e-14
Identity = 71/230 (30.87%), Postives = 104/230 (45.22%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGG-----AKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            L ++FQ ALR    RRA+L N   +   A               D++ + FP+E  GL+ + NWSL  DDVTP G+A+RNL    L +  K  K P      + E   S+ F  F+     V   L     LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A G      +P   ++     EG      V  G A  + IK+++ L
Sbjct:    3 LRQSFQ-ALRSVAARRALLRNFSVAPHAA---------------DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELTKQQK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVHAARPIVVYVATGGEFKDQQPQAQLLVDNDDEGATFVKVVITGAADLSTIKDSIGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|568013658|gb|ETL87835.1| (hypothetical protein L917_13069 [Phytophthora parasitica] >gi|568043770|gb|ETM41037.1| hypothetical protein L914_13156 [Phytophthora parasitica] >gi|570321756|gb|ETO69704.1| hypothetical protein F444_13755 [Phytophthora parasitica P1976])

HSP 1 Score: 80.4925 bits (197), Expect = 4.241e-14
Identity = 71/230 (30.87%), Postives = 104/230 (45.22%), Query Frame = 0

Query:    2 LVRAFQGALR----RRAVLHNLRASGALASIPSRTLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAAGG-----AKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            L ++FQ ALR    RRA+L N   +   A               D++ + FP+E  GL+ + NWSL  DDVTP G+A+RNL    L +  K  K P      + E   S+ F  F+     V   L     LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A G      +P   ++     EG      V  G A  + IK+++ L
Sbjct:    3 LRQSFQ-ALRSVAARRALLRNFSVAPHAA---------------DKFVVEFPQEHEGLNIEFNWSLADDDVTPHGDAFRNLSWPKLAELTKQQK-PAGKKVAIEEVDVSIVFNDFEGLYEKVTEHLSTEPSLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDVHAARPIVVYVATGGEFKDQQPQAQLLVDNDDEGATFVKVVITGAADLSTIKDSIGL 215

[Close]

BLAST of EWM25940.1 vs. NCBI_GenBank
Match: gi|695451953|ref|XP_009535858.1| (hypothetical protein PHYSODRAFT_348042 [Phytophthora sojae] >gi|348669402|gb|EGZ09225.1| hypothetical protein PHYSODRAFT_348042 [Phytophthora sojae])

HSP 1 Score: 80.4925 bits (197), Expect = 4.368e-14
Identity = 69/215 (32.09%), Postives = 101/215 (46.98%), Query Frame = 0

Query:   19 LRAS-GALASIPSR-----TLSGTPVTETDEYTI-FPREGPGLDYKLNWSLNGDDVTPGGNAYRNLDAAALQQGAKGDKAPRSGADKVLEAGDSVPFETFDLHLADVKAALEKASDLYVEDGAVKGGSN--FNIRVITDSASYALAAKALLDQSKVSGWPFEKAVNVYAA-----GGAKPFVGVMFAGGKEGNVTGATVAVGGAPATAIKNAMSL 219
            LR S  AL S+ SR       S  P    D++ + FP E  GL+ + NWSL  DDVTP G+A+RN+    L + AK +K P      + E   S+ F  FD     V   L   ++LY +DGAV    +    +RVI+DS   AL A++LL +  +      + + VY A      G +P   ++     EG      V  G A    +++A+ L
Sbjct:    3 LRQSFQALRSVASRRVLLRNFSVAP-HAADKFVVEFPEEHEGLNIEFNWSLADDDVTPHGDAFRNMSWPKLAELAKQEK-PAGKKVAIEEVDVSIVFNDFDGLYEKVTDHLSTEANLYTQDGAVGSFKDDRTRVRVISDSPLVALFAQSLLVRVPIKDPHAARPIVVYVATGGEFKGQEPQAQLLVDNDDEGATFVKVVITGAADLATVQDAIGL 215

The following BLAST results are available for this feature:

BLAST of EWM25940.1 vs. NCBI_GenBank

BLAST of EWM25940.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10


Match Name	E-value	Identity	Description
gi\|585107812\|gb\|EWM25940.1\|	3.946e-161	100.00	uncharacterized protein Naga_100469g3 [Nannochloro...	[more]
gi\|553194773\|ref\|XP_005856028.1\|	3.314e-154	88.98	hypothetical protein NGA_0514700 [Nannochloropsis ...	[more]
gi\|570977313\|gb\|ETP38941.1\|	7.453e-16	31.74	hypothetical protein F442_13555 [Phytophthora para...	[more]
gi\|953502961\|emb\|CEG35729.1\|	7.908e-16	31.47	hypothetical protein PHYSODRAFT_348042 [Plasmopara...	[more]
gi\|566018139\|gb\|ETI41050.1\|	1.416e-14	31.30	hypothetical protein F443_13692 [Phytophthora para...	[more]
gi\|675171389\|ref\|XP_008894579.1\|	1.472e-14	31.30	hypothetical protein PPTG_03645 [Phytophthora para...	[more]
gi\|301109014\|ref\|XP_002903588.1\|	1.976e-14	30.34	conserved hypothetical protein [Phytophthora infes...	[more]
gi\|970653921\|gb\|KUF92314.1\|	3.808e-14	30.87	Acidic elicitin A1 [Phytophthora nicotianae]	[more]
gi\|568013658\|gb\|ETL87835.1\|	4.241e-14	30.87	hypothetical protein L917_13069 [Phytophthora para...	[more]
gi\|695451953\|ref\|XP_009535858.1\|	4.368e-14	32.09	hypothetical protein PHYSODRAFT_348042 [Phytophtho...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna4747	rna4747	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications