rna4746, rna4746 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4746
Unique Name	rna4746
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2211
Alignment location	CM002464.1:240712..242839 -

Link to JBrowse

Properties


Property Name	Value
Product	ke2 family protein
Orig transcript id	gnl\|cribi\|Naga_100469g4.6985.mrna
Orig protein id	gnl\|cribi\|Naga_100469g4.6985
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:240712..242839 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100469g4	gene4583	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4746	rna4746-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25937.1	cds4734	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:240712..242839-
coding sequence from alignment at CM002464.1:240712..242839-

mRNA sequence

>rna4746 ID=rna4746|Name=rna4746|organism=Nannochloropsis gaditana|type=mRNA|length=2211bp
CAGCCTACGGTCCATTTGGTGGATCAAAGTGGTGGTTGGCACCAAAACCT
TCCCATGCATCCGCGGGCATAGTATAAGCATGTTTACCATCCAAAATTCT
CTCCTCCAATTAAGGGCGACAACCCAGAGGAAATCCTCTGTCGAGCGTCT
TTACTAGGCAATCATGCGGAGGACTTTGAGAGCAATGGTGGGGCTCTTAT
GCTTCACAAGCATATCCTCCTTAGGTCAGTCTCAGAAGCTTTTACGTAGC
ACGGATGCTGATTCGAGTGAAGACCAAGACACGAATAGCATGAGGGATAG
CACAAATACCAAAGACCAAGTCATAGTCGATCTAGATGGCGCTTTTTCTC
CCACCCGGGGCGCAGACAGGGCCGAGGGGCGAGCCAAAACCCCCAAGATC
CGAAGCACGGTCGGATCCCCCGACCGCCCTCCTGTCGCTGCTTTGCAATT
CCCCACTGTCGACCAAGACGACAAACGTGCAGCCATTGAATGGGACGTCG
ATACTAACGAGGTGGCAAGAGGATATAGCTGGCCACATTGTTACTGGCAC
GCTAAATATGCGATCAACTACACTCATTTTGGGCTCATCGATCCCAACGC
CGTGTACTGGGGGCAGCTCGTTCGTGGCTCCGGTGCCAATGTCGCCTACA
AAATGAAGGGGCGGTTTCCGAAATCCATATATTTCTCTTGGCAGGTGTAC
GCTTCTCAGACGTCCGCCGCCCCTGATCAAAAAATCACAGACTTTCACGT
CAAACCCCTGTGGGGCACCAATCCTTTTTCTAACCCGGACGCCACCCCGG
AGGACATGGGAGGCTACGAAGTCTACCTAACACCCAGCGGAGAAGAGGGC
TACGTGAACGAGCTCCGCCTTCCCAACGCCACCATCAACCAGCTCATTCT
CCGCATGTACAAGCCCGACCCCATCCTGGGTCCGTCCATATCCATCATCG
ACCTGGAGCCGCCCACGCTCTATATGGCACACGACATGGGGGAAGGGAAG
CGGGAGTGGAGGGCCTTGCCCCGGTGCTCGGCGGCCAAGGAGAAGTTGCT
GGCGGACCTGAGCAATGCTTGGTACGAGATCCAGTACCCGCACGCCACGG
GCACGGAGGGGCGAGGCGTGATCCCGATCCTCCGCGAGATGAACTGCCCT
ATGAACCCCACCAAGGGCAATGTCTCTTTCGTCCTCTTCCAGGGCGACTG
GCTCCCGCCCGAGCTCGCCATCGCCCGCCAATCCCAAGACTCGCCCTACA
TGATGTATTGCATCAATCCCTACAACGATTGGAGGCACTACTTGAACACC
CTCTTGAAGATTCGCTTCAAACTCCCGGTGATTGCCGATGGCCTGTTTTC
GGGCATTCGGGTCGCGAACGTCGGGGATTACGAAGTCCGTTACCTCTCCA
TGTCCACAGCCGACGGTTTCTACCCCACGATCGCCTCCATCGACGGGCGG
GGAATGCAGCGATTCTACAACTACTCCTCCGCAGGAAATTCCTCCTGGGA
CGGCTGGGTCGAGATCCGGGTCGCTTTGAACGAAGCGAAAGCCCGGGCCT
GCAATTTTTGGAGCGATCAAGCCATCTTCCTCCCCTTGGAAGTGGAAGAC
GTGCACCCCGCGAAGAGCATCGTCCTTTTCCTCCGGTCCATCCTGGCGCA
TGGGCCCAAATCGGCAGGGGCGGCCTCCAAGGCGTGTGGCAACAGCGCGC
TCTGCGGGAACCCACCCTTCATCCGCTCGATCATGCAGGAGCAGTACCCC
GAGCTCGAGGTCTATCACTGCGATAGCTGTGAAGGCAAGCCCCCTCTCGT
TACCCGCTACGAGGATTACTTCAAAAACCATTAGAAAAATGCACCATGCG
TGCTTGTTGACCGCTGAGTGATGTTTGAAAAACGCGTTTTAATGGCTTGT
TTCACCTCTGCGTCGAAAGATAAATTATGCAACCGCCCCTCATCAAAATT
TGTCTTCACGGTTCACCAAGAAATCTGCAAATGAGAGCAAAGAAATGACA
CCACACACGGGGTGAAGAAGGGAAAAGCATCCAATTTGAGGAATTCCCTC
AACACGAGACAAGGGGGACTGGGCGCCATCGCCATGGCTGACTTCGTCCA
AGGAATAGCAAAGCAAAGGCTTCAAAAGAGCTGAGCCCAGCTGTTGTTGT
GAAGATAAGCTCATGGCACACATAAATTCCATTTGAAAGAAGAAAGACGA
CCAAGCATCGA

protein sequence of rna4746

>rna4746-protein ID=rna4746-protein|Name=rna4746|organism=Nannochloropsis gaditana|type=polypeptide|length=133bp
MSASAMDEALASYKALEADTQELMARRQVTLQQANENGMVQQELDGLEAG
ENVYKMMGPVLLRVELEDAKQNVAKRLDLIKSTMEDFDQKIQGKQKDAEE
LGTKIMTMQQELQAKTADAAKAAAQDALKGVMA

mRNA from alignment at CM002464.1:240712..242839-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4746 ID=rna4746|Name=rna4746|organism=Nannochloropsis gaditana|type=mRNA|length=2128bp|location=Sequence derived from alignment at CM002464.1:240712..242839- (Nannochloropsis gaditana)
CTGTCAATTTGAATGGTGAGGGCGTGGCTCGTTGCTGAGAGGACGCATTG
ATTGCCGAGTAGGCAGGGGCACAAGCAGAGGTGCTGCTAGCTCTGGAGGG
CGAGCAAGTCGACCTTGATGCATCAAATTTTCGACTTGGGGGGAAAAAGA
TTCCCCAAAAAACATTTCTGGCGCAAACAAGGTTGAGACAGACCCCTTTG
AATAAACGTTTGAGACACTATTCTATTTTCGACATGCCTCCTGTGCATGC
ATTTTGTCCACTCCACCTGTTGTGCTTCCTCTTGTGTTCGCCGCTTGTCC
CAAGCACCCTAATGAAAGAGAAGTGAAAGGAATTAGCAATCACTGTCATT
CTGATTGGACGAGGTTCTCCGCAAATACCTGCACACACAGGTAGTGACCG
CTCTGTCGTGAAGATGAGCGCAAGCGCAATGGATGAGGCTTTGGCTTCGT
ACAAAGCCTTGGAAGCGGATACTCAGGAGCTCATGGCCCGTCGACAAGTT
ACTCTGCAGCAGGCGAATGAAAACGGGATGGTGCAGCAGGTATGCATGCA
TGATGATTGTTGAGAAGAAAGGAATGATAGTTGAGCACACGGGGAGCAGG
GGTGGGGTGGTACGCGGAAAATTGGAAGACAAACAGTTAGTGCCCTGACC
AATACCAAACCATCGTTATCATCGGAAAGAAAAGCGTCATTCTGAGTACA
CAATTCTACACAAGCCTTCCTAGGCTTCTATTGTCGCCATAGGGGGGGGG
GGGGTTCATGCATACTGACGGGGGACTTGAGGAGCCAGAAGCTTGATAGG
CAGTGGGCTGTTGCTTTTCATGTACAAACGGACCTGGGTCGCGATGCAGG
TTGTGATAACGACAAAAATTGTTGACGCGTCTCTATCGTCAACGTGTCCT
TACGCAGGAATTGGATGGTTTGGAAGCGGGCGAGAATGTCTACAAGATGA
TGGGCCCAGTGCTTCTCCGCGTTGAGTTGGAAGACGCGAAGCAAAATGTG
GCCAAACGGCTGGACTTGATCAAGAGTACAATGTAAGGGGGATGAGGGGG
GAGAGGAATAATGGAGGCGAGCGATGCGGGGAAAACGCTCGACATGACAT
GAATGTCTCTGTCTGTTTGAAACAGGGAGGATTTCGATCAAAAAATTCAG
GGGAAGCAGAAGGATGCGGAAGAGCTAGGCACCAAGGTATGTACATCATT
CGGTGAATATATCTAGAGGAAAATCGTTCATTGAAAAATGCGAAAAAGGA
AATGAAGAAGCAATGAGAAACAGAAGAAAAGGAGAGAGAGAAGAGAAAGG
GTACTGAGTATATGAGAACGATCCTGTCAAGATGAATCGTTTCAGGTTCT
CTGCGAGGATATTCTTTGAATAGCGTGCACGTGGAAGCTGTATACTATGC
GAAGCATTGCGTGGGAAACGTACAAGCCCTTGTTGGATCCCTGAGAGTTT
GTACTTGACTATCTAGGGTCGTAGGCGCGTTGATCGTCTTCTGGATGGAC
GGCTCTCCTCAAACAACGCCTCATTCGGTCCACGGTGCACATTGTTTTCT
CATGTCTACGTGCTGGATCAGCTTGTGCTAATTGTGAAGGCAAGGGTGTG
CACTCATGATCTCTTCGTTTTTTGGTTTGCTTTATTCCTCCCTCGCCAGA
TTATGACCATGCAACAGGAACTGCAAGCGAAGACCGCCGACGCAGCCAAG
GCCGCCGCTCAGGACGCATTGAAAGGTGTGATGGCATGATAGAGGTCGAC
AAAGAAAAAAAAACTTCGAAACAATTGTACTTGGTGTTAATGGGACAAAT
AAATTGGTAGACTTCCATCTAGTTGGAACTAGTCTGACCTGCGTTTTCAA
ACGAGCAATATTAGAAGGCATGCATGCCATAATATTAACAAAGTATCATG
TGACTACTTTGCATGAAAAAACAAGGGAAGTACCGAACCTTGAAGACATG
AAAAGTGGACATTCCATGTCGAGTGCTTTTCAGGATCCCGGTCCCAGCAT
TTCAAAAATTCAAACATTAAACGGCTGAAGAACTACAGCCTCCACCCCAG
TGTCGTGCATGTCTTTTGCGTCTTTTCGTTGCGGGTTCATTGACCGCACA
TCTAAAATGTGACGAGGCATATTATTTA

Coding sequence (CDS) from alignment at CM002464.1:240712..242839-

>rna4746 ID=rna4746|Name=rna4746|organism=Nannochloropsis gaditana|type=CDS|length=1608bp|location=Sequence derived from alignment at CM002464.1:240712..242839- (Nannochloropsis gaditana)
ATTATGACCATGCAACAGGAACTGCAAGCGAAGACCGCCGACGCAGCCAA
GGCCGCCGCTCAGGACGCATTGAAAGGTGTGATGGCATGAGGAGGATTTC
GATCAAAAAATTCAGGGGAAGCAGAAGGATGCGGAAGAGCTAGGCACCAA
GGAATTGGATGGTTTGGAAGCGGGCGAGAATGTCTACAAGATGATGGGCC
CAGTGCTTCTCCGCGTTGAGTTGGAAGACGCGAAGCAAAATGTGGCCAAA
CGGCTGGACTTGATCAAGAGTACAATATGAGCGCAAGCGCAATGGATGAG
GCTTTGGCTTCGTACAAAGCCTTGGAAGCGGATACTCAGGAGCTCATGGC
CCGTCGACAAGTTACTCTGCAGCAGGCGAATGAAAACGGGATGGTGCAGC
AGATTATGACCATGCAACAGGAACTGCAAGCGAAGACCGCCGACGCAGCC
AAGGCCGCCGCTCAGGACGCATTGAAAGGTGTGATGGCATGAGGAGGATT
TCGATCAAAAAATTCAGGGGAAGCAGAAGGATGCGGAAGAGCTAGGCACC
AAGGAATTGGATGGTTTGGAAGCGGGCGAGAATGTCTACAAGATGATGGG
CCCAGTGCTTCTCCGCGTTGAGTTGGAAGACGCGAAGCAAAATGTGGCCA
AACGGCTGGACTTGATCAAGAGTACAATATGAGCGCAAGCGCAATGGATG
AGGCTTTGGCTTCGTACAAAGCCTTGGAAGCGGATACTCAGGAGCTCATG
GCCCGTCGACAAGTTACTCTGCAGCAGGCGAATGAAAACGGGATGGTGCA
GCAGATTATGACCATGCAACAGGAACTGCAAGCGAAGACCGCCGACGCAG
CCAAGGCCGCCGCTCAGGACGCATTGAAAGGTGTGATGGCATGAGGAGGA
TTTCGATCAAAAAATTCAGGGGAAGCAGAAGGATGCGGAAGAGCTAGGCA
CCAAGGAATTGGATGGTTTGGAAGCGGGCGAGAATGTCTACAAGATGATG
GGCCCAGTGCTTCTCCGCGTTGAGTTGGAAGACGCGAAGCAAAATGTGGC
CAAACGGCTGGACTTGATCAAGAGTACAATATGAGCGCAAGCGCAATGGA
TGAGGCTTTGGCTTCGTACAAAGCCTTGGAAGCGGATACTCAGGAGCTCA
TGGCCCGTCGACAAGTTACTCTGCAGCAGGCGAATGAAAACGGGATGGTG
CAGCAGATTATGACCATGCAACAGGAACTGCAAGCGAAGACCGCCGACGC
AGCCAAGGCCGCCGCTCAGGACGCATTGAAAGGTGTGATGGCATGAGGAG
GATTTCGATCAAAAAATTCAGGGGAAGCAGAAGGATGCGGAAGAGCTAGG
CACCAAGGAATTGGATGGTTTGGAAGCGGGCGAGAATGTCTACAAGATGA
TGGGCCCAGTGCTTCTCCGCGTTGAGTTGGAAGACGCGAAGCAAAATGTG
GCCAAACGGCTGGACTTGATCAAGAGTACAATATGAGCGCAAGCGCAATG
GATGAGGCTTTGGCTTCGTACAAAGCCTTGGAAGCGGATACTCAGGAGCT
CATGGCCCGTCGACAAGTTACTCTGCAGCAGGCGAATGAAAACGGGATGG
TGCAGCAG

Synonyms

Publications