rna4743, rna4743 (mRNA) Nannochloropsis gaditana

Overview
Namerna4743
Unique Namerna4743
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1229
Alignment locationCM002464.1:235080..235626 +

Link to JBrowse

Properties
Property NameValue
Product1-acyl-sn-glycerol-3-phosphate acyltransferase
Orig transcript idgnl|cribi|Naga_102294g1.6049.mrna
Orig protein idgnl|cribi|Naga_102294g1.6049
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:235080..235626 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_102294g1gene4580Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4743rna4743-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25942.1cds4731Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4743 ID=rna4743|Name=rna4743|organism=Nannochloropsis gaditana|type=mRNA|length=1229bp
TTGTATAGCTAAATGACAGGATTTTGGGGCATAACAATGTGATGTATGCA
AGGTAGACCTGATAGTGAACTCTGAACTCTTAGTGCTGGTTCGTTGCCGT
CACTTTTTGCTTCAGCCCCTCTCACTCTCCTCCTTTCCTTCCCGCACCTC
GCGATAGAAGGATCAAGCTCTGGATCGGGTGCTTGTGGCGCTCGGTTTGT
GCTTGGACGCTGTAGGAGCCCGGTGCGACCAACCCCCCTGTCTGCCTCTC
CCCGAGGCTCCCTCGTACTGGGTCGATTGCTTCCCTGGAATGCCGTGTAG
TCCCCACGGGACTAGGAAGACCAGACAAGGCGGAGAGAGACAGCGAACAT
CGACAAGTCGACAGGGGCTACACCGTTGGCGCATTGCACCTGGCACGGCG
CGGGCCTTATCACCTGTGGTCACGAATCGATCCGCCCGTTGAGAGGAACG
GGCGTGAGACATGCTCCGAATATGGTTCAAATACCTGACCGCACGGCTCC
TGTTGGTCTCTGTGGCCCTTGTTGTGTCCTCCCTGGGCGCGAACCTGATG
GCCTTGGCGCTCTTCTTGGTCATCCGCCCCTTCTCCCGCTCCCTTTACCG
GCGTCTCGTGTCTCAATACGTGGCCTGCATGTGGATCGACGCCCTCTCCC
TCCTTCTCCCCGGCACCCAAATCCATATCACCGGCGACTCTGGTGCGTCC
CTGTTCCCCCCCTCCTTCCCCCCCTCGGTCTGTCTCGGCCTTCGCGCCAT
TTCCCCCTCTCGCTTTCATGGGGCCCAAGGTGGCGGGACGGTGGAGGGCT
TGTTATTAATGAGACGGTGGAAGGCTTTTCATTATTCGGACGGTGGAAGG
CTTGTTATTAATGGATCGATGTTGACGTGGGGCACATGCCTTCCTCTCCA
CGCCCCGACAAAGACCTCTCCCTCCCTCTCTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTCCCTTCGTCCCCCTCAGACATGCCCGACGGGATCACCGCGG
GCATCGTGGTGGCGAACCACCAGTACGAAGGCGACTGGTGGTTCATGCTG
ATGGTCGCACGCTTCCTGGGCCTCCACGGGAATGTCAAGATCATTGTCCG
CGAGGGGCTTCGGCGCATCCCCCTGCTCGGGTGGTTGATCCGCTTGGTGG
AGTACCCAACCATCTCCTCCTCCTGGTCGCACTCCCGCTCCACCTTGTTC
GGCCTGCTCCGGTCTTTCAACACGGGTGA
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protein sequence of rna4743

>rna4743-protein ID=rna4743-protein|Name=rna4743|organism=Nannochloropsis gaditana|type=polypeptide|length=129bp
MTIAIPGTTGHHPSFSPSSPSSPAPSPSLPPAPGRPSPPSSSTAAQTVAP
SHGARPEGEHAGLLHTFLRFCNGQGPRDVHIRLKRYPLAEVMGDPHWLDN
RWAEKDRVLTYFGRHAARRRPSWPWSGCV
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mRNA from alignment at CM002464.1:235080..235626+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4743 ID=rna4743|Name=rna4743|organism=Nannochloropsis gaditana|type=mRNA|length=547bp|location=Sequence derived from alignment at CM002464.1:235080..235626+ (Nannochloropsis gaditana)
ATGACCATCGCCATTCCGGGAACCACGGGccaccatccctccttctcccc
ctcctccccttcctcccccgccccttccccttcccttcccccggcccctg
gtcggccgtcccccccttcctcctccaccgccgcccaGACAGTTGCCCCT
TCCCACGGGGCCCGACCCGAAGGGGAGCACGCCGGCTTGCTCCACACCTT
CTTACGTTTCTGCAACGGCCAAGGCCCCCGGGACGTGCACATCCGCTTAA
AACGCTACCCCCTCGCGGAAGTGATGGGGGACCCGCACTGGCTCGACAAC
CGGTGGGCCGAAAAAGACCGAGTCTTGACCTACTTCGGCCGCCACGCGgc
gtttcccgccttcccacccccccatTTGAACGGCGGCGGGAGCACTCAGA
CgcacggcgggaggggcggaccACGGGGACCGGCAGGGGCCCACGCGGTG
AttggggcggcgggggaagcgCACTACCTCCGCTCCTTCAATACCCGGAG
GTTCAAGGCGGAGACGTCCTTCTTGGCCTTGGTCCGGCTGTGTTTGA
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Coding sequence (CDS) from alignment at CM002464.1:235080..235626+

>rna4743 ID=rna4743|Name=rna4743|organism=Nannochloropsis gaditana|type=CDS|length=780bp|location=Sequence derived from alignment at CM002464.1:235080..235626+ (Nannochloropsis gaditana)
ATGACCATCGCCATTCCGGGAACCACGGGccaccatccctccttctcccc
ctcctccccttcctcccccgccccttccccttcccttcccccggcccctg
gtcggccgtcccccccttcctcctccaccgccgcccaGACAGTTGCCCCT
TCCCACGGGGCCCGACCCGAAGGGGAGCACGCCGGCTTGCTCCACACCTT
CTTACGTTTCTGCAACGGCCAAGGCCCCCGGGACGTGCACATCCGCTTAA
AACGCTACCCCCTCGCGGAAGTGATGGGGGACCCGCACTGGCTCGACAAC
CGGTGGGCCGAAAAAGACCGAGTCTTGACCTACTTCGGCCGCCACGCGgc
GCGGAGACGTCCTTCTTGGCCTTGGTCCGGCTGTGTTTGAATGACCATCG
CCATTCCGGGAACCACGGGccaccatccctccttctccccctcctcccct
tcctcccccgccccttccccttcccttcccccggcccctggtcggccgtc
ccccccttcctcctccaccgccgcccaGACAGTTGCCCCTTCCCACGGGG
CCCGACCCGAAGGGGAGCACGCCGGCTTGCTCCACACCTTCTTACGTTTC
TGCAACGGCCAAGGCCCCCGGGACGTGCACATCCGCTTAAAACGCTACCC
CCTCGCGGAAGTGATGGGGGACCCGCACTGGCTCGACAACCGGTGGGCCG
AAAAAGACCGAGTCTTGACCTACTTCGGCCGCCACGCGgcGCGGAGACGT
CCTTCTTGGCCTTGGTCCGGCTGTGTTTGA
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Synonyms
Publications