rna4738, rna4738 (mRNA) Nannochloropsis gaditana

Overview
Namerna4738
Unique Namerna4738
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1011
Alignment locationCM002464.1:220306..221495 +

Link to JBrowse

Properties
Property NameValue
ProductETC complex I subunit
Orig transcript idgnl|cribi|Naga_101207g1.818.mrna
Orig protein idgnl|cribi|Naga_101207g1.818
GeneNDA
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:220306..221495 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
NDAgene4575Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4738rna4738-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25948.1cds4726Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4738 ID=rna4738|Name=rna4738|organism=Nannochloropsis gaditana|type=mRNA|length=1011bp
ATGGTGCAGACATATGAGCTGAGGTCGTATGACGGAGTAGGCATTTTAAG
GGGAAGGGACGGGCAAATTTTTGCTAGAGTGCCGAGTGCTTGCCTTGACA
CCTCGCAAAATATTCCTCGCCTGTACAAGGCTCTGGGAAGGGCTATTAAA
GTCCAGCTATGGGGTCTTGTCTCTCTTGTTTCAAGCGGATCCGGCCACGC
CCTTCCCCCCCGCGGATCCTCCCCCTCCCCCCTGCCCTCCGACGGACCTT
CTTTGCTTCCCCCCCTTCAACCTCCCTCGCGTAACACCAGCGGGGGCAGT
AGCCATGGTGCTAAAGGCGTCTGGGAGGGAAGCTGGGAGGAAGGGAGAAG
GAGGAGCAGCAGCCACGGAAGCCACAGCAGCAGCGTGGGGTCCGTCGTCA
GCAATCCTTCGCCTCGGGGGCAGGGGGGACGGCTGGACGGAGGGCGAGGA
AAGGGGGGAGGGGGAGGGAGGGGCGGATTCCATGCCCGGTATGAGCTCTG
TGATGTGATTGGAGTGGGATCCACGTCAACGGTGCACCGCTGCGTGGAGC
GGGGCGGGGAGGGGCGGGAGTTTGCCTGCAAAATCATCGACAAACGGATG
GTCGAAAGCCGTTTCCGGGGCCTTTTGGAGCAGTTTCAGATCGAAGTCGC
GGTCTTGAAGGCCTTGGACCACCCGAACATCATCCGGTTGGAGGACGTGT
TCGAAACGGAGCACCGGATCTACATGGTGATGGAGCTGATGCGGGGGGGG
GAACTCTTCGACCGGGTGGTGGAACGCGGAAGTTTGTCGGAGGAGGAGGC
GAGCGAGGTGGTCCGCGCCCTGGCCTCCGCCATCGCCTACATGCACTCAA
TGGGCATCATCCACCGGGACCTTAAGCCGGAGAACTTGCTCTTGTCGCAC
GGGGGCGCGGGCCCTGGCGGTGTCGGGCAGGCGGTGAAGATCATCGACTT
CGGGCTGAGCAAAATGGTGGGGGGGGCAATGGCCCAGAGTTTCCTCGGCA
CCCGGGGGTGA
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protein sequence of rna4738

>rna4738-protein ID=rna4738-protein|Name=rna4738|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MSSHLLATARLCCRRGGNVRPVYGWHMTAGGPQAALAASIGARASYHKTA
TGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAK
AEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWETEEVKAA
FRD
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mRNA from alignment at CM002464.1:220306..221495+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4738 ID=rna4738|Name=rna4738|organism=Nannochloropsis gaditana|type=mRNA|length=1190bp|location=Sequence derived from alignment at CM002464.1:220306..221495+ (Nannochloropsis gaditana)
GAGTCAAGGGTTGACTTACCGCGTGGAGGGTGCTTGTATGGCCGTGTCTT
TCTATCCCTACGTCGTCGGCAAGATTGCCAAcagcccttcccccgtccgc
tTTCTGTTTTCCCGTCAAACACAGCAAGACCTATGTCTTCCCATCTCTTG
GCCACAGCCAGGCTATGTTGCCGGCGTGGGGGGAATGTGCGACCGGTGTA
TGGGTGGCACATGACGGCGGGTGGGCCGCAAGCAGCTCTTGCGGCATCAA
TAGGCGCCAGGGCATCTTATCATAAGACAGCTACAGGTCCTGTCGGACTA
GCAGTGAACCCGAATGCCCGCGAGGACTTCATCAAGCAACAGAAGGAGAT
ATTGGAGAAAATAGAGGTGCGTGGCATCCGGACAAGATGCGTGGATTCCT
GGGCGGGGTTCACTGTTCCTGGGAGGCCGCACTGTACGTTCGAAGCATAC
CCTACGGCTTAggggcgagcaggaggcaagAGACAAGACAATTCACCCCC
CTATCAGTGCCTCGATCAAcatcatttcccccctctaattcgtctctcct
cccttttcgctATGCAcacccgcctttcctctttctcgccctcggGTCTT
CCCccatctctctctcctttctcctcccctgcttgcCCGGCACGCCGTTT
TTGACAGCGGTTCCCCCCCGAGGCCGAGTACAGGAAAGTGCTCACGTCCA
TCGCCAGCTACCGTCtcgccaaggcggaggaaatcgAGGATCCGCgagcc
ttggaggaggccctggacgaCGGGCAGTTGGAGGAACTGCTGGTGCAGGG
CGAGAACGAGTTGATGTTGATGGAGGACTACAAGGAATGGAAGTATTGGG
AaacggaggaggtgaaggcggCCTTTCGGGATtaaaggaaaagcagggga
agaaaaggcagggGCGGCAGGGGAAGTGGGGGATGGTAAGCATTTGCcag
acggggcggaggagagaggaaggagagaagggcaggaagggagggaggaa
agggggggggagggaagtgggagATAGGGGTGGAATGGAGGCGATGGATT
TCGAGGGATACGATCTGCGTCTGCTTGCCTGTGCTTTACAGGAAAGCTGG
CGAAGGGATGCGTCAGGAGtatgcgagggagggaggcagggagggaggga
gagagggaggggaggaagcgagggcaTTGGAGTGAGGaaa
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Coding sequence (CDS) from alignment at CM002464.1:220306..221495+

>rna4738 ID=rna4738|Name=rna4738|organism=Nannochloropsis gaditana|type=CDS|length=924bp|location=Sequence derived from alignment at CM002464.1:220306..221495+ (Nannochloropsis gaditana)
ATGTCTTCCCATCTCTTGGCCACAGCCAGGCTATGTTGCCGGCGTGGGGG
GAATGTGCGACCGGTGTATGGGTGGCACATGACGGCGGGTGGGCCGCAAG
CAGCTCTTGCGGCATCAATAGGCGCCAGGGCATCTTATCATAAGACAGCT
ACAGGTCCTGTCGGACTAGCAGTGAACCCGAATGCCCGCGAGGACTTCAT
CAAGCAACAGAAGGAGATATTGGAGAAAATAGAGCGGTTCCCCCCCGAGG
CCGAGTACAGGAAAGTGCTCACGTCCATCGCCAGCTACCGTCtcgccaag
gcggaggaaatcgAGGATCCGCgagccttggaggaggccctggacgaCGG
GCAGTTGGAGGAACTGCTGGTGCAGGGCGAGAACGAGTTGATGTTGATGG
AGGACTACAAGGAATGGAAGTATTGGGAaacggaggaggtgaaggcggCC
TTTCGGGATtaaATGTCTTCCCATCTCTTGGCCACAGCCAGGCTATGTTG
CCGGCGTGGGGGGAATGTGCGACCGGTGTATGGGTGGCACATGACGGCGG
GTGGGCCGCAAGCAGCTCTTGCGGCATCAATAGGCGCCAGGGCATCTTAT
CATAAGACAGCTACAGGTCCTGTCGGACTAGCAGTGAACCCGAATGCCCG
CGAGGACTTCATCAAGCAACAGAAGGAGATATTGGAGAAAATAGAGCGGT
TCCCCCCCGAGGCCGAGTACAGGAAAGTGCTCACGTCCATCGCCAGCTAC
CGTCtcgccaaggcggaggaaatcgAGGATCCGCgagccttggaggaggc
cctggacgaCGGGCAGTTGGAGGAACTGCTGGTGCAGGGCGAGAACGAGT
TGATGTTGATGGAGGACTACAAGGAATGGAAGTATTGGGAaacggaggag
gtgaaggcggCCTTTCGGGATtaa
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Synonyms
Publications