EWM25948.1, cds4726 (CDS) Nannochloropsis gaditana

Overview
NameEWM25948.1
Unique Namecds4726
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:220438..220671 +
Alignment locationCM002464.1:220963..221190 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25948.1
ProductETC complex I subunit
Orig transcript idgnl|cribi|Naga_101207g1.818.mrna
GeneNDA
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:220438..220671 +
CM002464.1supercontigCM002464.1:220963..221190 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
GO:0005743mitochondrial inner membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016651oxidoreductase activity, acting on NAD(P)H
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
GO:0022904respiratory electron transport chain
Vocabulary: INTERPRO
TermDefinition
IPR029016GAF_dom-like
IPR006806ETC_CI_29_9
Homology
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|553194762|ref|XP_005856026.1| (NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [Nannochloropsis gaditana CCMP526] >gi|422293018|gb|EKU20319.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 5 [Nannochloropsis gaditana CCMP526] >gi|585107824|gb|EWM25948.1| ETC complex I subunit [Nannochloropsis gaditana])

HSP 1 Score: 315.849 bits (808), Expect = 3.387e-109
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 
Query:    1 MSSHLLATARLCCRRGGNVRPVYGWHMTAGGPQAALAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWETEEVKAAFRD 153
            MSSHLLATARLCCRRGGNVRPVYGWHMTAGGPQAALAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWETEEVKAAFRD
Sbjct:    1 MSSHLLATARLCCRRGGNVRPVYGWHMTAGGPQAALAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWETEEVKAAFRD 153
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|298709518|emb|CBJ48533.1| (NADH dehydrogenase (ubiquinone) [Ectocarpus siliculosus])

HSP 1 Score: 98.9821 bits (245), Expect = 6.702e-24
Identity = 56/109 (51.38%), Postives = 74/109 (67.89%), Query Frame = 0 
Query:   35 ALAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWE 143
            A  A+   R    KT+TG VGLAV+ NAR +FI  QK+ILEKI+  P  A+YRK + +I+ YRL  A E ED   +E+ ++ GQLEELLV G+NEL L++ Y EW+ WE
Sbjct:    2 AFRATQAVRMVVKKTSTGLVGLAVDVNARANFIALQKQILEKIKVIPDHAQYRKDVEAISGYRLKVATETEDEETIEDEINHGQLEELLVDGKNELKLIDKYAEWRLWE 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|675204665|ref|XP_008911217.1| (hypothetical protein PPTG_15678 [Phytophthora parasitica INRA-310] >gi|566015117|gb|ETI38028.1| hypothetical protein F443_16126 [Phytophthora parasitica P1569] >gi|567952570|gb|ETK78242.1| hypothetical protein L915_15672 [Phytophthora parasitica] >gi|567981234|gb|ETL31677.1| hypothetical protein L916_15567 [Phytophthora parasitica] >gi|568010724|gb|ETL84907.1| hypothetical protein L917_15390 [Phytophthora parasitica] >gi|568040642|gb|ETM38090.1| hypothetical protein L914_15522 [Phytophthora parasitica] >gi|568088587|gb|ETN03444.1| hypothetical protein PPTG_15678 [Phytophthora parasitica INRA-310] >gi|570318849|gb|ETO66797.1| hypothetical protein F444_16111 [Phytophthora parasitica P1976] >gi|570942661|gb|ETP07918.1| hypothetical protein F441_15955 [Phytophthora parasitica CJ01A1] >gi|570973281|gb|ETP35948.1| hypothetical protein F442_15979 [Phytophthora parasitica P10297] >gi|970629526|gb|KUF76761.1| NADH dehydrogenase 1 alpha subcomplex subunit 5 [Phytophthora nicotianae] >gi|970657942|gb|KUF95766.1| Ubiquitin carboxyl-terminal hydrolase [Phytophthora nicotianae])

HSP 1 Score: 91.2781 bits (225), Expect = 5.118e-21
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:   36 LAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAE-YRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWET 144
            + AS   R +  KT+TG VGL VNPNAR+D IK  +  LE+++  PPEA+ YR  +  I ++RL+  EE +D   +E  ++ GQLEEL+ Q E+EL ++  Y E K WE+
Sbjct:    1 MFASRVLRMAVTKTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVEENKDEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|953501439|emb|CEG37440.1| (probable nadh dehydrogenase [Plasmopara halstedii])

HSP 1 Score: 90.5077 bits (223), Expect = 1.179e-20
Identity = 47/103 (45.63%), Postives = 67/103 (65.05%), Query Frame = 0 
Query:   43 RASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAE-YRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWET 144
            R +  KT+TG VGL VNPNAR+D IK  +  LE+++  PPEA+ YR  +  I ++RL+  E  ED   +E  ++ GQLEEL+ Q E+EL ++  Y E K WE+
Sbjct:    8 RMAVTKTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVENNEDEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|695432029|ref|XP_009530835.1| (hypothetical protein PHYSODRAFT_354988 [Phytophthora sojae] >gi|348673587|gb|EGZ13406.1| hypothetical protein PHYSODRAFT_354988 [Phytophthora sojae])

HSP 1 Score: 87.4261 bits (215), Expect = 1.620e-19
Identity = 48/110 (43.64%), Postives = 69/110 (62.73%), Query Frame = 0 
Query:   36 LAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAE-YRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWET 144
            + AS   R +  KT+TG VGL VNPNAR+D IK  +  LE+++  PPEA+ YR  +  I ++RL   E  E+   +E  ++ GQLEEL+ Q E+EL ++  Y E K WE+
Sbjct:    1 MFASRVLRMAVTKTSTGLVGLKVNPNARQDLIKIYRRTLEEVKILPPEAKNYRNAVEQITNFRLNVVESNEEEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|1214685911|gb|OWZ02785.1| (hypothetical protein PHMEG_00025591 [Phytophthora megakarya])

HSP 1 Score: 86.2705 bits (212), Expect = 5.270e-19
Identity = 47/110 (42.73%), Postives = 69/110 (62.73%), Query Frame = 0 
Query:   36 LAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAE-YRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWET 144
            + AS   R +  KT+TG VGL VNPNAR+D IK  +  L++++  PPEA+ YR  +  I ++RL   E  E+   +E  ++ GQLEEL+ Q E+EL ++  Y E K WE+
Sbjct:    1 MFASRVLRMAVTKTSTGLVGLKVNPNARQDLIKIYRRTLDEVKILPPEAKNYRNAVEQITNFRLNVVETNEEEDVIERKINCGQLEELIEQAEDELSVIPVYLEHKLWES 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|698801440|ref|XP_009833749.1| (hypothetical protein H257_09280 [Aphanomyces astaci] >gi|574111341|gb|ETV76837.1| hypothetical protein H257_09280 [Aphanomyces astaci])

HSP 1 Score: 84.7297 bits (208), Expect = 2.102e-18
Identity = 45/107 (42.06%), Postives = 64/107 (59.81%), Query Frame = 0 
Query:   37 AASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWE 143
            A  + + A   KT+TG VGLAVNPN R D IK   E L+  +   P+  YR  +  I ++RL    E E+  A+E+ ++ GQ+EEL+ Q E+EL L+  Y EW+ WE
Sbjct:    4 ATRVLSMAVAQKTSTGLVGLAVNPNWRVDLIKLYGETLKATQTHLPDCFYRTSVEQITNFRLKVVTEHEEEDAVEKLINCGQVEELIEQAEDELFLIPKYAEWRLWE 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|673029484|ref|XP_008868703.1| (hypothetical protein H310_05701 [Aphanomyces invadans] >gi|574475098|gb|ETW02098.1| hypothetical protein H310_05701 [Aphanomyces invadans])

HSP 1 Score: 83.9593 bits (206), Expect = 4.883e-18
Identity = 44/107 (41.12%), Postives = 63/107 (58.88%), Query Frame = 0 
Query:   37 AASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWE 143
            A  + + A   KT+TG VGLAVNPN R D IK   E L+  +   P+  YR  +  I ++RL    E E+   +E+ ++ GQ+EEL+ Q E+EL L+  Y EW+ WE
Sbjct:    4 ATRVLSMAVTQKTSTGLVGLAVNPNWRADLIKLYGETLKATQTHLPDCFYRTSVEQITNFRLKAVTEHENEAEVEKLINCGQVEELIEQAEDELFLIPKYAEWRLWE 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|301108019|ref|XP_002903091.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262097463|gb|EEY55515.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 82.0333 bits (201), Expect = 2.341e-17
Identity = 49/110 (44.55%), Postives = 71/110 (64.55%), Query Frame = 0 
Query:   36 LAASIGARASYHKTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAE-YRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWET 144
            + AS   R +  KT+TG VGL VNPNAR+D IK  +  LE+++  PPEA+ YR  +  I ++RL+  EE E+   +E  ++ GQLEEL+ Q E+EL ++  Y E K WE+
Sbjct:    1 MFASRVLRMAVTKTSTGLVGLKVNPNARQDLIKIYRRTLEEVKVLPPEAKNYRNAVEQITNFRLSVVEENEEEDVIERKINCGQLEELIEQAEDELTVIPVYLEHKLWES 110
[Close]
BLAST of EWM25948.1 vs. NCBI_GenBank
Match: gi|552928023|gb|ESA11910.1| (hypothetical protein GLOINDRAFT_347597 [Rhizophagus irregularis DAOM 181602] >gi|595490270|gb|EXX74263.1| hypothetical protein RirG_052730 [Rhizophagus irregularis DAOM 197198w] >gi|595490271|gb|EXX74264.1| hypothetical protein RirG_052730 [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 82.0333 bits (201), Expect = 3.105e-17
Identity = 42/100 (42.00%), Postives = 60/100 (60.00%), Query Frame = 0 
Query:   48 KTATGPVGLAVNPNAREDFIKQQKEILEKIERFPPEAEYRKVLTSIASYRLAKAEEIEDPRALEEALDDGQLEELLVQGENELMLMEDYKEWKYWETEEV 147
            K  TG  GLAV+P+ R   IK   + L  +   PP A YR+   +   +RL  AE  ++ + +EE +D GQ+EEL+VQ E+EL L+   +EWK WE+ EV
Sbjct:   13 KATTGIFGLAVHPDPRPHLIKTYNKTLSALTHIPPTAVYRQATEATTKHRLKIAESTKNIQEIEEKIDAGQIEELIVQAEDELKLVAKMEEWKPWESLEV 112
The following BLAST results are available for this feature:
BLAST of EWM25948.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553194762|ref|XP_005856026.1|3.387e-109100.00NADH dehydrogenase (ubiquinone) 1 alpha subcomplex... [more]
gi|298709518|emb|CBJ48533.1|6.702e-2451.38NADH dehydrogenase (ubiquinone) [Ectocarpus silicu... [more]
gi|675204665|ref|XP_008911217.1|5.118e-2144.55hypothetical protein PPTG_15678 [Phytophthora para... [more]
gi|953501439|emb|CEG37440.1|1.179e-2045.63probable nadh dehydrogenase [Plasmopara halstedii][more]
gi|695432029|ref|XP_009530835.1|1.620e-1943.64hypothetical protein PHYSODRAFT_354988 [Phytophtho... [more]
gi|1214685911|gb|OWZ02785.1|5.270e-1942.73hypothetical protein PHMEG_00025591 [Phytophthora ... [more]
gi|698801440|ref|XP_009833749.1|2.102e-1842.06hypothetical protein H257_09280 [Aphanomyces astac... [more]
gi|673029484|ref|XP_008868703.1|4.883e-1841.12hypothetical protein H310_05701 [Aphanomyces invad... [more]
gi|301108019|ref|XP_002903091.1|2.341e-1744.55conserved hypothetical protein [Phytophthora infes... [more]
gi|552928023|gb|ESA11910.1|3.105e-1742.00hypothetical protein GLOINDRAFT_347597 [Rhizophagu... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4738rna4738Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications