rna4735, rna4735 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4735
Unique Name	rna4735
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	612
Alignment location	CM002464.1:213498..215534 +

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Properties


Property Name	Value
Product	coproporphyrinogen iii oxidase chloroplast precursor
Orig transcript id	gnl\|cribi\|Naga_100665g2.2037.mrna
Orig protein id	gnl\|cribi\|Naga_100665g2.2037
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:213498..215534 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100665g2	gene4572	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4735	rna4735-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25951.1	cds4723	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:213498..215534+
coding sequence from alignment at CM002464.1:213498..215534+

mRNA sequence

>rna4735 ID=rna4735|Name=rna4735|organism=Nannochloropsis gaditana|type=mRNA|length=612bp
ATGGAGGAAGCCAAGATGAGCACTGGGATGGAGCCGGGGCACGAGAACAT
TGACGAAGGCTTGTACTCCCGTCAGCTTTATGTGATGGGACACGAGGCGC
AGAAGCGGATGCAGGCCTCGGACGTGCTCATCGTCGGGGTGGCCGGTCTG
GGCATCGAAGTCGCCAAGAACGTGATCTTGGCCGGCGTCAAGTCCGTCAC
GCTCTTCGACCCCGCCCCCGTCGCATACCCGGATCTTGCTGCCCAATTCT
ACCTCTCAGAGGCCGACTTAGGCAAGCCGCGGGACCAAGCCTCCGCGCCC
CGACTCGCGGAGCTGAATCCTTACGTGCCCGTGCATGTGCTGGAGCCGGA
GGCCGGCGAGGCCCTGACGGCAGAGGCGGTGAAGCGGTACCAGGTCCTCT
GCGTGACCAACCGACCTTTGGCAGAGCAGCTCCGCTTGAACGCCATCACC
CACCCCTTGAACATCGCCTTCATCGCCAGCGAGGTCCGGGGACTGTGTGG
GAGCGTGTTTTGTGACTTCGGCGAGGCCTTTTTGGTCTCGGACCCGTCGG
ACGAACCCGCCATCAACGCCATGATTGGCAGCATTACCCAGCCCCTCCTA
CTTCCAACATGA

protein sequence of rna4735

>rna4735-protein ID=rna4735-protein|Name=rna4735|organism=Nannochloropsis gaditana|type=polypeptide|length=409bp
MPALAAAVASLLLLLSSGSTDAFTSAARPRVSTSGYIHQPIANVGGSRRL
DAVAMARSAPCYRRRVAMAAPAPTKEAGPSIGWDSHKAVDSVPESLVRGV
EGNESMRRRFEKACREAQIAICKAVEDCDGGAKFHSDAWVRADGGGGISM
VLKDGKVWEKAGCNLSVVYGSMPQEALQAATERGVDRAKGLKPGERVPFF
ACGLSSVMHPRNPHCPTMHFNYRYFETEGGAWWFGGGMDITPSYLNTEDM
THFHGTLKRVCDKHDAAYYPKFKKWADEYFLIKHRGETRGLGGIFFDDQN
DKSPDQHFAFSEELLQTVTEAYLPIIEKHKDDAYTEEEKKWQQIRRGRYT
EFNLVYDRGTVFGLKTGGRIESILMSLPETARWEYDHRPVEGSPEAEIME
AFKSPREWV

mRNA from alignment at CM002464.1:213498..215534+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4735 ID=rna4735|Name=rna4735|organism=Nannochloropsis gaditana|type=mRNA|length=2037bp|location=Sequence derived from alignment at CM002464.1:213498..215534+ (Nannochloropsis gaditana)
ATGCCTGCCTTAGCGGCTGCGGTAGCGTCTCTGCtactccttctctcctc
agGCTCCACCGACGCATTCACTTCCGCCGCGCGTCCTCGTGTCTCCACAA
GCGGATACATCCATCAACCAATAGCCAACGTTGGTGGTAGTCGCCGCCTA
GACGCCGTAGCCATGGCACGTAGTGCTCCTTGTTATCGAAGACGGGTAGC
CATGgcggcgcccgcccccacgaAAGAGGCGGGCCCGTCGATCGGATGGG
ACTCTCACAAAGCCGTGGACAGCGTCCCTGAGTCCCTGGTCCGTGGTGTC
GAAGGCAATGAGAGCATGCGCCGACGCTTCGAGAAGGCGTGCCGCGAGGC
CCAGGTACGGAGataggaagggaagaagtaAAGGGAGAGAATGGGGGGGG
ACCTCCCGGGGGAGCGAGCAAGGTGGTGCACACGTGACCTGTCATGGGAA
GACGGATCGATGAAGCTTTGAGTTTTGATCGGGGAAGACAGGTTTAGAAT
ACGAGGGTCATGCAcatgcttctttctcctcacctggccttccatcctca
tcacatTCCCCGCACGTCTACAGATCGCGATTTgcaaggccgtggaggaC
TGCGATGGGGGCGCCAAATTTCATTCTGATGCCTGGGTccgggcggacgg
gggcgggggcattTCCATGGTGTtgaaggatgggaaggtgTGGGAAAAAG
CCGGGTGCAACCTCTCGGTGGTGTATGGGAGCATGCCGCAGGAGGCGCTG
CAGGCGGCCACGGAACGCGGAGTGGACCGGGCGAAAGGGTTGAAGCCAGg
taaagagggaggccgggagggagggaggggaggagggaaggagggaggga
aaggtcaATGGGACTCGGAcctcgcggaggaggaataaAAGAGAGGCCTT
GGCattttgattttttcttGGCATGCTGTGGCCGCATATACTGTGATGGT
GACATTTCTTTCGTACATGTGTCTGAGGTTTTCGTGTTCCCTTCCAATGC
CGTGGGACGCTGGACTCacccgcggccgccaccatcctccccttcctccg
cgaaCAGGAGAACGCGTCCCCTTTTTCGCCTGTGGCTTGAGCTCAGTCAT
GCACCCCAGGGTGAGTGATGGGGagagaatgggaggggaggaggtgcaga
tcctaaggaagagagggaaggggaggagctAGAGGAGGACCTTAACCGCT
CTgcacgtgggggggggcgtagaggaagaggggtctGGGGGCAGCCGGCT
GGTGTGGGGGGAAATCCATGAATGGAAGAGCACGTTCAAATATATAAATG
GGGATCGGGAGCGATGAAGGCGCAGTTGTGCGATTGCGCCTCGGATGCGG
TACAATCGAGGGTGGAGCCTGGGGGCAGGTACGGGTCAGGACTCGACTGC
TTATTTTCTcgattctttcctccttttccccctctctcagAACCCGCACT
GCCCCACCATGCACTTCAACTACCGGTACTtcgagacggaggggggcgcC
TGGTGGTtcggggggggcatggacaTCACCCCTTCCTACCTTAACACCGA
AGACATGACGCATTTCCACGGGACCTTGAAGCGCGTCTGCGACAAGCACG
ACGCGGCCTACTACCCGAAATTCAAAAAATGGGCGGACGAGTACTTCTTG
ATCAAGCACCGAGGGGAGACCCGGGGCTTGGGGGGTATTTTTTTCGACGA
CCAGAACGACAAGAGTCCCGACCAGCACTTCGCCTTCAGCGAGGAGCTTT
TGCAAACGGTGACCGAAGCCTACCTGCCCATCATCGAGAAGCACAAGGAT
GACGCctacacggaggaggaaaaaaaatggcagCAGATCCGGCGCGGGCG
GTACACGGAGTTCAACCTGGTGTACGACAGGGGCACGGTCTTCGGCCTCA
AAACGGGGGGGCGGATCGAAAGCATCCTGATGTCCCTCCCGGAGACGGCT
CGGTGGGAGTATGACCACCGCCCCGTGGAGGGGAGTCCCGAGGCGGAGAT
CATGGAGGCCTTCAAGTCGCCGCGAGAATGGGtttga

Coding sequence (CDS) from alignment at CM002464.1:213498..215534+

>rna4735 ID=rna4735|Name=rna4735|organism=Nannochloropsis gaditana|type=CDS|length=4920bp|location=Sequence derived from alignment at CM002464.1:213498..215534+ (Nannochloropsis gaditana)
ATGCCTGCCTTAGCGGCTGCGGTAGCGTCTCTGCtactccttctctcctc
agGCTCCACCGACGCATTCACTTCCGCCGCGCGTCCTCGTGTCTCCACAA
GCGGATACATCCATCAACCAATAGCCAACGTTGGTGGTAGTCGCCGCCTA
GACGCCGTAGCCATGGCACGTAGTGCTCCTTGTTATCGAAGACGGGTAGC
CATGgcggcgcccgcccccacgaAAGAGGCGGGCCCGTCGATCGGATGGG
ACTCTCACAAAGCCGTGGACAGCGTCCCTGAGTCCCTGGTCCGTGGTGTC
GAAGGCAATGAGAGCATGCGCCGACGCTTCGAGAAGGCGTGCCGCGAGGC
CCAGATCGCGATTTgcaaggccgtggaggaCTGCGATGGGGGCGCCAAAT
TTCATTCTGATGCCTGGGTccgggcggacgggggcgggggcattTCCATG
GTGTtgaaggatgggaaggtgTGGGAAAAAGCCGGGTGCAACCTCTCGGT
GGTGTATGGGAGCATGCCGCAGGAGGCGCTGCAGGCGGCCACGGAACGCG
GAGTGGACCGGGCGAAAGGGTTGAAGCCAGGAGAACGCGTCCCCTTTTTC
GCCTGTGGCTTGAGCTCAGTCATGCACCCCAGGAACCCGCACTGCCCCAC
CATGCACTTCAACTACCGGTACTtcgagacggaggggggcgcCTGGTGGT
tcggggggggcatggacaTCACCCCTTCCTACCTTAACACCGAAGACATG
ACGCATTTCCACGGGACCTTGAAGCGCGTCTGCGACAAGCACGACGCGGC
CTACTACCCGAAATTCAAAAAATGGGCGGACGAGTACTTCTTGATCAAGC
ACCGAGGGGAGACCCGGGGCTTGGGGGGTATTTTTTTCGACGACCAGAAC
GACAAGAGTCCCGACCAGCACTTCGCCTTCAGCGAGGAGCTTTTGCAAAC
GGTGACCGAAGCCTACCTGCCCATCATCGAGAAGCACAAGGATGACGCct
acacggaggaggaaaaaaaatggcagCAGATCCGGCGCGGGCGGTACACG
GAGTTCAACCTGGTGTACGACAGGGGCACGGTCTTCGGCCTCAAAACGGG
GGGGCGGATCGAAAGCATCCTGATGTCCCTCCCGGAGACGGCTCGGTGGG
AGTATGACCACCGCCCCGTGGAGGGGAGTCCCGAGGCGGAGATCATGGAG
GCCTTCAAGTCGCCGCGAGAATGGGtttgaATGCCTGCCTTAGCGGCTGC
GGTAGCGTCTCTGCtactccttctctcctcagGCTCCACCGACGCATTCA
CTTCCGCCGCGCGTCCTCGTGTCTCCACAAGCGGATACATCCATCAACCA
ATAGCCAACGTTGGTGGTAGTCGCCGCCTAGACGCCGTAGCCATGGCACG
TAGTGCTCCTTGTTATCGAAGACGGGTAGCCATGgcggcgcccgccccca
cgaAAGAGGCGGGCCCGTCGATCGGATGGGACTCTCACAAAGCCGTGGAC
AGCGTCCCTGAGTCCCTGGTCCGTGGTGTCGAAGGCAATGAGAGCATGCG
CCGACGCTTCGAGAAGGCGTGCCGCGAGGCCCAGATCGCGATTTgcaagg
ccgtggaggaCTGCGATGGGGGCGCCAAATTTCATTCTGATGCCTGGGTc
cgggcggacgggggcgggggcattTCCATGGTGTtgaaggatgggaaggt
gTGGGAAAAAGCCGGGTGCAACCTCTCGGTGGTGTATGGGAGCATGCCGC
AGGAGGCGCTGCAGGCGGCCACGGAACGCGGAGTGGACCGGGCGAAAGGG
TTGAAGCCAGGAGAACGCGTCCCCTTTTTCGCCTGTGGCTTGAGCTCAGT
CATGCACCCCAGGAACCCGCACTGCCCCACCATGCACTTCAACTACCGGT
ACTtcgagacggaggggggcgcCTGGTGGTtcggggggggcatggacaTC
ACCCCTTCCTACCTTAACACCGAAGACATGACGCATTTCCACGGGACCTT
GAAGCGCGTCTGCGACAAGCACGACGCGGCCTACTACCCGAAATTCAAAA
AATGGGCGGACGAGTACTTCTTGATCAAGCACCGAGGGGAGACCCGGGGC
TTGGGGGGTATTTTTTTCGACGACCAGAACGACAAGAGTCCCGACCAGCA
CTTCGCCTTCAGCGAGGAGCTTTTGCAAACGGTGACCGAAGCCTACCTGC
CCATCATCGAGAAGCACAAGGATGACGCctacacggaggaggaaaaaaaa
tggcagCAGATCCGGCGCGGGCGGTACACGGAGTTCAACCTGGTGTACGA
CAGGGGCACGGTCTTCGGCCTCAAAACGGGGGGGCGGATCGAAAGCATCC
TGATGTCCCTCCCGGAGACGGCTCGGTGGGAGTATGACCACCGCCCCGTG
GAGGGGAGTCCCGAGGCGGAGATCATGGAGGCCTTCAAGTCGCCGCGAGA
ATGGGtttgaATGCCTGCCTTAGCGGCTGCGGTAGCGTCTCTGCtactcc
ttctctcctcagGCTCCACCGACGCATTCACTTCCGCCGCGCGTCCTCGT
GTCTCCACAAGCGGATACATCCATCAACCAATAGCCAACGTTGGTGGTAG
TCGCCGCCTAGACGCCGTAGCCATGGCACGTAGTGCTCCTTGTTATCGAA
GACGGGTAGCCATGgcggcgcccgcccccacgaAAGAGGCGGGCCCGTCG
ATCGGATGGGACTCTCACAAAGCCGTGGACAGCGTCCCTGAGTCCCTGGT
CCGTGGTGTCGAAGGCAATGAGAGCATGCGCCGACGCTTCGAGAAGGCGT
GCCGCGAGGCCCAGATCGCGATTTgcaaggccgtggaggaCTGCGATGGG
GGCGCCAAATTTCATTCTGATGCCTGGGTccgggcggacgggggcggggg
cattTCCATGGTGTtgaaggatgggaaggtgTGGGAAAAAGCCGGGTGCA
ACCTCTCGGTGGTGTATGGGAGCATGCCGCAGGAGGCGCTGCAGGCGGCC
ACGGAACGCGGAGTGGACCGGGCGAAAGGGTTGAAGCCAGGAGAACGCGT
CCCCTTTTTCGCCTGTGGCTTGAGCTCAGTCATGCACCCCAGGAACCCGC
ACTGCCCCACCATGCACTTCAACTACCGGTACTtcgagacggaggggggc
gcCTGGTGGTtcggggggggcatggacaTCACCCCTTCCTACCTTAACAC
CGAAGACATGACGCATTTCCACGGGACCTTGAAGCGCGTCTGCGACAAGC
ACGACGCGGCCTACTACCCGAAATTCAAAAAATGGGCGGACGAGTACTTC
TTGATCAAGCACCGAGGGGAGACCCGGGGCTTGGGGGGTATTTTTTTCGA
CGACCAGAACGACAAGAGTCCCGACCAGCACTTCGCCTTCAGCGAGGAGC
TTTTGCAAACGGTGACCGAAGCCTACCTGCCCATCATCGAGAAGCACAAG
GATGACGCctacacggaggaggaaaaaaaatggcagCAGATCCGGCGCGG
GCGGTACACGGAGTTCAACCTGGTGTACGACAGGGGCACGGTCTTCGGCC
TCAAAACGGGGGGGCGGATCGAAAGCATCCTGATGTCCCTCCCGGAGACG
GCTCGGTGGGAGTATGACCACCGCCCCGTGGAGGGGAGTCCCGAGGCGGA
GATCATGGAGGCCTTCAAGTCGCCGCGAGAATGGGtttgaATGCCTGCCT
TAGCGGCTGCGGTAGCGTCTCTGCtactccttctctcctcagGCTCCACC
GACGCATTCACTTCCGCCGCGCGTCCTCGTGTCTCCACAAGCGGATACAT
CCATCAACCAATAGCCAACGTTGGTGGTAGTCGCCGCCTAGACGCCGTAG
CCATGGCACGTAGTGCTCCTTGTTATCGAAGACGGGTAGCCATGgcggcg
cccgcccccacgaAAGAGGCGGGCCCGTCGATCGGATGGGACTCTCACAA
AGCCGTGGACAGCGTCCCTGAGTCCCTGGTCCGTGGTGTCGAAGGCAATG
AGAGCATGCGCCGACGCTTCGAGAAGGCGTGCCGCGAGGCCCAGATCGCG
ATTTgcaaggccgtggaggaCTGCGATGGGGGCGCCAAATTTCATTCTGA
TGCCTGGGTccgggcggacgggggcgggggcattTCCATGGTGTtgaagg
atgggaaggtgTGGGAAAAAGCCGGGTGCAACCTCTCGGTGGTGTATGGG
AGCATGCCGCAGGAGGCGCTGCAGGCGGCCACGGAACGCGGAGTGGACCG
GGCGAAAGGGTTGAAGCCAGGAGAACGCGTCCCCTTTTTCGCCTGTGGCT
TGAGCTCAGTCATGCACCCCAGGAACCCGCACTGCCCCACCATGCACTTC
AACTACCGGTACTtcgagacggaggggggcgcCTGGTGGTtcgggggggg
catggacaTCACCCCTTCCTACCTTAACACCGAAGACATGACGCATTTCC
ACGGGACCTTGAAGCGCGTCTGCGACAAGCACGACGCGGCCTACTACCCG
AAATTCAAAAAATGGGCGGACGAGTACTTCTTGATCAAGCACCGAGGGGA
GACCCGGGGCTTGGGGGGTATTTTTTTCGACGACCAGAACGACAAGAGTC
CCGACCAGCACTTCGCCTTCAGCGAGGAGCTTTTGCAAACGGTGACCGAA
GCCTACCTGCCCATCATCGAGAAGCACAAGGATGACGCctacacggagga
ggaaaaaaaatggcagCAGATCCGGCGCGGGCGGTACACGGAGTTCAACC
TGGTGTACGACAGGGGCACGGTCTTCGGCCTCAAAACGGGGGGGCGGATC
GAAAGCATCCTGATGTCCCTCCCGGAGACGGCTCGGTGGGAGTATGACCA
CCGCCCCGTGGAGGGGAGTCCCGAGGCGGAGATCATGGAGGCCTTCAAGT
CGCCGCGAGAATGGGtttga

Synonyms

Publications