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Properties
| Property Name | Value |
|---|
| Product | Winged helix-turn-helix transcription repressor |
| Orig transcript id | gnl|cribi|Naga_100400g3.8595.mrna |
| Orig protein id | gnl|cribi|Naga_100400g3.8595 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:192667..195707 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4728 ID=rna4728|Name=rna4728|organism=Nannochloropsis gaditana|type=mRNA|length=240bp
ATGCACCAACTAAAATGTCGCTCATACATGCTAGATCATTCGTGCGTTCG
TGGATGGCCCCATTTCCAGACAACAACAGATGAGCGGTCAATGTGCGTAA
AGGCTCTTCATTGTATGAAAGGTGACAAAAACTACAGAAACCCGGTCTAT
TACGATTTGTTATGTGAGTTAATATGCTACAGTCATTTACTCTCTATGAT
TGGCCATATAAGTGCTTTCTTTGATTTAGCAACGGCGTAA back to topprotein sequence of rna4728 >rna4728-protein ID=rna4728-protein|Name=rna4728|organism=Nannochloropsis gaditana|type=polypeptide|length=788bp
MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGK
SFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRH
ECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQ
GMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSP
LSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPL
KHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQH
SPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPG
ARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPV
PGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPS
RPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGP
SSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPG
TRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHL
IQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSL
SSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSH
PRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQD
VSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV back to topmRNA from alignment at CM002464.1:192667..195707+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4728 ID=rna4728|Name=rna4728|organism=Nannochloropsis gaditana|type=mRNA|length=3041bp|location=Sequence derived from alignment at CM002464.1:192667..195707+ (Nannochloropsis gaditana)
ATGGAGCCGTACAACCGTAACACAGGAGCTATTAGCAAGAAAGCTTCGCC
ACCTGAATCTTCTTCACAGTCTACATGCTTTGTGAAGAAGCTCTTTACCA
TGGTGGCAGTCGAGGATCCTTCCATTCTCTCATTCACTCCAggtaaagag
gaggacggaagaaggggagcagTTGAATAAGacgaaaggggagggcttgg
GTTTGATAATCTGCACAAAAACTCTCTGTAATCAGCATACTATATCATAA
GCATGATATCACGTACATGTGCATGATATGCATCCGCTTTTTACTGTCGC
TGTCTTTCCCGAGGTGGTTGAGTGAGCAGCACGAATCCGTATGTGCCAGG
AACATGTGTGACAGCCATACACATGTATCAACTTTTACGGATAAATACAA
TCATATGTGTCCATTTCTATAAGAACATGTGCATGTGCTCTGCTATTTAA
AGAGAGATCTCCACTCGTGACAAGAAAGTTTTGGGCGGCACCTGGGAAGC
CAGTCAAGCTCACCATTCCCCCTAtccccgtttccctccttgtcttgaCC
CCCATGGTAGATGGCAAGAGTTTTGAGGTTAAAAACCCGAAGCGCCTCGA
GAGTGAAATCCTGCCTCGATACTATCGACACGGCCACTTCACCTCCTTTG
TGCGCCAGCTGAACTTCTACAATTTCAAGGTACGATACGCCCTGGGGACG
GACAGAGATGCagaagacgaggcagggTGTAAGAGTCGAGGGCGAGTGTT
TCCACGAGGTGTCTTGAGATTAGGCTCGCAGACTCTGCCTTTTCTGGATG
CTCACGCCGTTGTGGTTTGGATGTGctaccctccctgccttccttccctc
ctctcccccttccatttcctcacCTTTTTggttttcccccttctccctcc
ccacattCACAatccgcccccctccctcctcacagaAAGTTTCCAAAGAA
AGGAACATTTGGATCTACCGGCACGAATGCTTCCAGCGCGGCCGCCCCCA
GCTCTTAGACATGCTCAAAAGGAAAACGAGCAAtgcccaccacccccacc
acccttaCAACATCCAGCATAccatggggggggggagggcgggggaagga
aatggcggcggagagggagggcaggggatgCCTGGGAACGAGCATGCGAC
GAAGATGGCGTTGGCGAAGATGACGTCCAAGGAAGCAGGGCGCCATGGCG
GGAGGGCCCCTtctgggggaaggaggagcaagcccTCCCCTGAATTCACG
TACCAGCCcggctttttttccccgctttccccggcccctcttcccccttc
cccgtacGCACACCCGCAGCACCACCCCCACATGCAATGCCAGCCTATGg
accttccctttcagccGCACGGCGGCCCCCGGGAGGCGAGCCCTTCGGCC
CACGGCGGCCCGACTCTCCCCCTCAAGCATGGCCACGCGTCCTTACCCCG
CAATGCGAGCGGAgacaccttctcctccacctccacgtcggACGAGTCTT
CCTACGCTGCCTGCGggcatccccctccccaccatccaCAGCACCCCACG
CACTCCCAGCCACAGCCACAACACAGCCCAGACCTTCAAAGCTACGGCTG
GGCGAAAGGAAGGCTTGGAATGGACGGGACCCCTCGGtgtaccctccctc
cctccctccctccccctccctccaccccgtaCTCCACCCTGTCccggccc
tgcccctccccccccgagcccGGCGCCCGGCAGCCTCCACAAtgtgccct
ccccccctcccaaggcCCCCACATCACGTACCAAAGACTGGAGACTCAtg
ttcctccctcagggCGACCCCGACCCCTGAGCTCCGCCGGAGGGGCCCAG
GGCACTGAGGCCTATGCCCCCGTGCCGGGCCCGCTCTCGGAGACAGGTAG
CGGCGGGCACACCACCCGGGAGAACAGTTTGGACGACTCCGTCTGCAGTT
TccaccggggggagggaggtgcgcggggcgggcggggcccTAGGTCGGAG
CACGTCCACCCACCACACCCGTCGCGACCGCTCTACTACGTCTccgccga
gggggagggagggagcaccacccctccctccttcccgccctcgcaggcac
gcgggcaggggaagaTGTCTTCGTTGCCCCGTTTCTTGGACCAGGGGGTG
gctggaagagaggggcgaggccCCAGCAGTCCTCAGTTTACCATGGCCGT
GGGACGGACACagggccctccctccctcctcgatgCGCGCGtgtcgaagg
gggggaagcagggtgtcgccctccctccctcccttcctgcgtcGGTGGGG
ACGTACAACCATTGGGCGCCTGGGACGCGGGTAGTGGGCTCGTccacact
cccttcctctttcccttcctcccacccctcctcgcACGGGGCAGATGGAT
CCAgggccctctcttcccacccCGGGGCTGGTCTTTGCAAAAGCCACCGG
GGTGAGCGGGAAGCGGGGCATTTGATCCAACTTCCCCATGCCTTCCGGTC
CACGCCGGCAAGCCAACGCTTgtaccctccctcgccccaacaccggggcg
ggagggggaaagaggaggaggagagcgggggggaggaagaggaagggagc
cagAGCAGCTTGGTGTCGAGTCTGTCGTCCGAGGATGAATTCGACTCCGG
CGACCTCTGCCACGACCACAGGCAGGGGTCTTGCtcccagcagcagcagg
cgtTCCTGGAGCACGTGGGGCGCCGGCAGCgacaccaccaccaccaccac
caccaccaccaccaccacagtCATCCCCGccacggcggggagggcggtcg
gCTTGGAAAACGCGCGGCACACTACGGACTCGGGCCTATCCCCAGGCCGC
AGGAGGCGCGGCGCAAGCCACGGTCCTCCCATTCCCAAACTGCCCGGCCG
GCCGCACCCGAGAAGCCGCAAGACGTGagtgtggacgaggaggaagcggc
gatgCAGATGGCGAGCTTTCGACTGGGGCGGTTTTGGGGCGgggcgatgg
gggggagaggggaagggttaAAAAAGACGTTGGAAGTGTGa back to topCoding sequence (CDS) from alignment at CM002464.1:192667..195707+ >rna4728 ID=rna4728|Name=rna4728|organism=Nannochloropsis gaditana|type=CDS|length=7101bp|location=Sequence derived from alignment at CM002464.1:192667..195707+ (Nannochloropsis gaditana)
ATGGAGCCGTACAACCGTAACACAGGAGCTATTAGCAAGAAAGCTTCGCC
ACCTGAATCTTCTTCACAGTCTACATGCTTTGTGAAGAAGCTCTTTACCA
TGGTGGCAGTCGAGGATCCTTCCATTCTCTCATTCACTCCAgATGGCAAG
AGTTTTGAGGTTAAAAACCCGAAGCGCCTCGAGAGTGAAATCCTGCCTCG
ATACTATCGACACGGCCACTTCACCTCCTTTGTGCGCCAGCTGAACTTCT
ACAATTTCAAGaAAGTTTCCAAAGAAAGGAACATTTGGATCTACCGGCAC
GAATGCTTCCAGCGCGGCCGCCCCCAGCTCTTAGACATGCTCAAAAGGAA
AACGAGCAAtgcccaccacccccaccacccttaCAACATCCAGCATAcca
tggggggggggagggcgggggaaggaaatggcggcggagagggagggcag
gggatgCCTGGGAACGAGCATGCGACGAAGATGGCGTTGGCGAAGATGAC
GTCCAAGGAAGCAGGGCGCCATGGCGGGAGGGCCCCTtctgggggaagga
ggagcaagcccTCCCCTGAATTCACGTACCAGCCcggctttttttccccg
ctttccccggcccctcttcccccttccccgtacGCACACCCGCAGCACCA
CCCCCACATGCAATGCCAGCCTATGgaccttccctttcagccGCACGGCG
GCCCCCGGGAGGCGAGCCCTTCGGCCCACGGCGGCCCGACTCTCCCCCTC
AAGCATGGCCACGCGTCCTTACCCCGCAATGCGAGCGGAgacaccttctc
ctccacctccacgtcggACGAGTCTTCCTACGCTGCCTGCGggcatcccc
ctccccaccatccaCAGCACCCCACGCACTCCCAGCCACAGCCACAACAC
AGCCCAGACCTTCAAAGCTACGGCTGGGCGAAAGGAAGGCTTGGAATGGA
CGGGACCCCTCGGtgtaccctccctccctccctccctccccctccctcca
ccccgtaCTCCACCCTGTCccggccctgcccctccccccccgagcccGGC
GCCCGGCAGCCTCCACAAtgtgccctccccccctcccaaggcCCCCACAT
CACGTACCAAAGACTGGAGACTCAtgttcctccctcagggCGACCCCGAC
CCCTGAGCTCCGCCGGAGGGGCCCAGGGCACTGAGGCCTATGCCCCCGTG
CCGGGCCCGCTCTCGGAGACAGGTAGCGGCGGGCACACCACCCGGGAGAA
CAGTTTGGACGACTCCGTCTGCAGTTTccaccggggggagggaggtgcgc
ggggcgggcggggcccTAGGTCGGAGCACGTCCACCCACCACACCCGTCG
CGACCGCTCTACTACGTCTccgccgagggggagggagggagcaccacccc
tccctccttcccgccctcgcaggcacgcgggcaggggaagaTGTCTTCGT
TGCCCCGTTTCTTGGACCAGGGGGTGgctggaagagaggggcgaggccCC
AGCAGTCCTCAGTTTACCATGGCCGTGGGACGGACACagggccctccctc
cctcctcgatgCGCGCGtgtcgaagggggggaagcagggtgtcgccctcc
ctccctcccttcctgcgtcGGTGGGGACGTACAACCATTGGGCGCCTGGG
ACGCGGGTAGTGGGCTCGTccacactcccttcctctttcccttcctccca
cccctcctcgcACGGGGCAGATGGATCCAgggccctctcttcccacccCG
GGGCTGGTCTTTGCAAAAGCCACCGGGGTGAGCGGGAAGCGGGGCATTTG
ATCCAACTTCCCCATGCCTTCCGGTCCACGCCGGCAAGCCAACGCTTgta
ccctccctcgccccaacaccggggcgggagggggaaagaggaggaggaga
gcgggggggaggaagaggaagggagccagAGCAGCTTGGTGTCGAGTCTG
TCGTCCGAGGATGAATTCGACTCCGGCGACCTCTGCCACGACCACAGGCA
GGGGTCTTGCtcccagcagcagcaggcgtTCCTGGAGCACGTGGGGCGCC
GGCAGCgacaccaccaccaccaccaccaccaccaccaccaccacagtCAT
CCCCGccacggcggggagggcggtcggCTTGGAAAACGCGCGGCACACTA
CGGACTCGGGCCTATCCCCAGGCCGCAGGAGGCGCGGCGCAAGCCACGGT
CCTCCCATTCCCAAACTGCCCGGCCGGCCGCACCCGAGAAGCCGCAAGAC
GTGagtgtggacgaggaggaagcggcgatgCAGATGGCGAGCTTTCGACT
GGGGCGGTTTTGGGGCGgggcgatgggggggagaggggaagggttaAAAA
AGACGTTGGAAGTGTGaATGGAGCCGTACAACCGTAACACAGGAGCTATT
AGCAAGAAAGCTTCGCCACCTGAATCTTCTTCACAGTCTACATGCTTTGT
GAAGAAGCTCTTTACCATGGTGGCAGTCGAGGATCCTTCCATTCTCTCAT
TCACTCCAgATGGCAAGAGTTTTGAGGTTAAAAACCCGAAGCGCCTCGAG
AGTGAAATCCTGCCTCGATACTATCGACACGGCCACTTCACCTCCTTTGT
GCGCCAGCTGAACTTCTACAATTTCAAGaAAGTTTCCAAAGAAAGGAACA
TTTGGATCTACCGGCACGAATGCTTCCAGCGCGGCCGCCCCCAGCTCTTA
GACATGCTCAAAAGGAAAACGAGCAAtgcccaccacccccaccaccctta
CAACATCCAGCATAccatggggggggggagggcgggggaaggaaatggcg
gcggagagggagggcaggggatgCCTGGGAACGAGCATGCGACGAAGATG
GCGTTGGCGAAGATGACGTCCAAGGAAGCAGGGCGCCATGGCGGGAGGGC
CCCTtctgggggaaggaggagcaagcccTCCCCTGAATTCACGTACCAGC
Ccggctttttttccccgctttccccggcccctcttcccccttccccgtac
GCACACCCGCAGCACCACCCCCACATGCAATGCCAGCCTATGgaccttcc
ctttcagccGCACGGCGGCCCCCGGGAGGCGAGCCCTTCGGCCCACGGCG
GCCCGACTCTCCCCCTCAAGCATGGCCACGCGTCCTTACCCCGCAATGCG
AGCGGAgacaccttctcctccacctccacgtcggACGAGTCTTCCTACGC
TGCCTGCGggcatccccctccccaccatccaCAGCACCCCACGCACTCCC
AGCCACAGCCACAACACAGCCCAGACCTTCAAAGCTACGGCTGGGCGAAA
GGAAGGCTTGGAATGGACGGGACCCCTCGGtgtaccctccctccctccct
ccctccccctccctccaccccgtaCTCCACCCTGTCccggccctgcccct
ccccccccgagcccGGCGCCCGGCAGCCTCCACAAtgtgccctccccccc
tcccaaggcCCCCACATCACGTACCAAAGACTGGAGACTCAtgttcctcc
ctcagggCGACCCCGACCCCTGAGCTCCGCCGGAGGGGCCCAGGGCACTG
AGGCCTATGCCCCCGTGCCGGGCCCGCTCTCGGAGACAGGTAGCGGCGGG
CACACCACCCGGGAGAACAGTTTGGACGACTCCGTCTGCAGTTTccaccg
gggggagggaggtgcgcggggcgggcggggcccTAGGTCGGAGCACGTCC
ACCCACCACACCCGTCGCGACCGCTCTACTACGTCTccgccgagggggag
ggagggagcaccacccctccctccttcccgccctcgcaggcacgcgggca
ggggaagaTGTCTTCGTTGCCCCGTTTCTTGGACCAGGGGGTGgctggaa
gagaggggcgaggccCCAGCAGTCCTCAGTTTACCATGGCCGTGGGACGG
ACACagggccctccctccctcctcgatgCGCGCGtgtcgaagggggggaa
gcagggtgtcgccctccctccctcccttcctgcgtcGGTGGGGACGTACA
ACCATTGGGCGCCTGGGACGCGGGTAGTGGGCTCGTccacactcccttcc
tctttcccttcctcccacccctcctcgcACGGGGCAGATGGATCCAgggc
cctctcttcccacccCGGGGCTGGTCTTTGCAAAAGCCACCGGGGTGAGC
GGGAAGCGGGGCATTTGATCCAACTTCCCCATGCCTTCCGGTCCACGCCG
GCAAGCCAACGCTTgtaccctccctcgccccaacaccggggcgggagggg
gaaagaggaggaggagagcgggggggaggaagaggaagggagccagAGCA
GCTTGGTGTCGAGTCTGTCGTCCGAGGATGAATTCGACTCCGGCGACCTC
TGCCACGACCACAGGCAGGGGTCTTGCtcccagcagcagcaggcgtTCCT
GGAGCACGTGGGGCGCCGGCAGCgacaccaccaccaccaccaccaccacc
accaccaccacagtCATCCCCGccacggcggggagggcggtcggCTTGGA
AAACGCGCGGCACACTACGGACTCGGGCCTATCCCCAGGCCGCAGGAGGC
GCGGCGCAAGCCACGGTCCTCCCATTCCCAAACTGCCCGGCCGGCCGCAC
CCGAGAAGCCGCAAGACGTGagtgtggacgaggaggaagcggcgatgCAG
ATGGCGAGCTTTCGACTGGGGCGGTTTTGGGGCGgggcgatgggggggag
aggggaagggttaAAAAAGACGTTGGAAGTGTGaATGGAGCCGTACAACC
GTAACACAGGAGCTATTAGCAAGAAAGCTTCGCCACCTGAATCTTCTTCA
CAGTCTACATGCTTTGTGAAGAAGCTCTTTACCATGGTGGCAGTCGAGGA
TCCTTCCATTCTCTCATTCACTCCAgATGGCAAGAGTTTTGAGGTTAAAA
ACCCGAAGCGCCTCGAGAGTGAAATCCTGCCTCGATACTATCGACACGGC
CACTTCACCTCCTTTGTGCGCCAGCTGAACTTCTACAATTTCAAGaAAGT
TTCCAAAGAAAGGAACATTTGGATCTACCGGCACGAATGCTTCCAGCGCG
GCCGCCCCCAGCTCTTAGACATGCTCAAAAGGAAAACGAGCAAtgcccac
cacccccaccacccttaCAACATCCAGCATAccatggggggggggagggc
gggggaaggaaatggcggcggagagggagggcaggggatgCCTGGGAACG
AGCATGCGACGAAGATGGCGTTGGCGAAGATGACGTCCAAGGAAGCAGGG
CGCCATGGCGGGAGGGCCCCTtctgggggaaggaggagcaagcccTCCCC
TGAATTCACGTACCAGCCcggctttttttccccgctttccccggcccctc
ttcccccttccccgtacGCACACCCGCAGCACCACCCCCACATGCAATGC
CAGCCTATGgaccttccctttcagccGCACGGCGGCCCCCGGGAGGCGAG
CCCTTCGGCCCACGGCGGCCCGACTCTCCCCCTCAAGCATGGCCACGCGT
CCTTACCCCGCAATGCGAGCGGAgacaccttctcctccacctccacgtcg
gACGAGTCTTCCTACGCTGCCTGCGggcatccccctccccaccatccaCA
GCACCCCACGCACTCCCAGCCACAGCCACAACACAGCCCAGACCTTCAAA
GCTACGGCTGGGCGAAAGGAAGGCTTGGAATGGACGGGACCCCTCGGtgt
accctccctccctccctccctccccctccctccaccccgtaCTCCACCCT
GTCccggccctgcccctccccccccgagcccGGCGCCCGGCAGCCTCCAC
AAtgtgccctccccccctcccaaggcCCCCACATCACGTACCAAAGACTG
GAGACTCAtgttcctccctcagggCGACCCCGACCCCTGAGCTCCGCCGG
AGGGGCCCAGGGCACTGAGGCCTATGCCCCCGTGCCGGGCCCGCTCTCGG
AGACAGGTAGCGGCGGGCACACCACCCGGGAGAACAGTTTGGACGACTCC
GTCTGCAGTTTccaccggggggagggaggtgcgcggggcgggcggggccc
TAGGTCGGAGCACGTCCACCCACCACACCCGTCGCGACCGCTCTACTACG
TCTccgccgagggggagggagggagcaccacccctccctccttcccgccc
tcgcaggcacgcgggcaggggaagaTGTCTTCGTTGCCCCGTTTCTTGGA
CCAGGGGGTGgctggaagagaggggcgaggccCCAGCAGTCCTCAGTTTA
CCATGGCCGTGGGACGGACACagggccctccctccctcctcgatgCGCGC
Gtgtcgaagggggggaagcagggtgtcgccctccctccctcccttcctgc
gtcGGTGGGGACGTACAACCATTGGGCGCCTGGGACGCGGGTAGTGGGCT
CGTccacactcccttcctctttcccttcctcccacccctcctcgcACGGG
GCAGATGGATCCAgggccctctcttcccacccCGGGGCTGGTCTTTGCAA
AAGCCACCGGGGTGAGCGGGAAGCGGGGCATTTGATCCAACTTCCCCATG
CCTTCCGGTCCACGCCGGCAAGCCAACGCTTgtaccctccctcgccccaa
caccggggcgggagggggaaagaggaggaggagagcgggggggaggaaga
ggaagggagccagAGCAGCTTGGTGTCGAGTCTGTCGTCCGAGGATGAAT
TCGACTCCGGCGACCTCTGCCACGACCACAGGCAGGGGTCTTGCtcccag
cagcagcaggcgtTCCTGGAGCACGTGGGGCGCCGGCAGCgacaccacca
ccaccaccaccaccaccaccaccaccacagtCATCCCCGccacggcgggg
agggcggtcggCTTGGAAAACGCGCGGCACACTACGGACTCGGGCCTATC
CCCAGGCCGCAGGAGGCGCGGCGCAAGCCACGGTCCTCCCATTCCCAAAC
TGCCCGGCCGGCCGCACCCGAGAAGCCGCAAGACGTGagtgtggacgagg
aggaagcggcgatgCAGATGGCGAGCTTTCGACTGGGGCGGTTTTGGGGC
GgggcgatgggggggagaggggaagggttaAAAAAGACGTTGGAAGTGTG
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