EWM25958.1, cds4716 (CDS) Nannochloropsis gaditana

Overview
NameEWM25958.1
Unique Namecds4716
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:192667..192808 +
Alignment locationCM002464.1:193227..193345 +
Alignment locationCM002464.1:193602..195707 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25958.1
ProductWinged helix-turn-helix transcription repressor
Orig transcript idgnl|cribi|Naga_100400g3.8595.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:192667..192808 +
CM002464.1supercontigCM002464.1:193227..193345 +
CM002464.1supercontigCM002464.1:193602..195707 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006139nucleobase-containing compound metabolic process
GO:0009058biosynthetic process
GO:0009628response to abiotic stimulus
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0043565sequence-specific DNA binding
GO:0003700DNA-binding transcription factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR027725HSF_fam
IPR011991WHTH_DNA-bd_dom
IPR000232HSF_DNA-bd
Homology
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|585107842|gb|EWM25958.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana])

HSP 1 Score: 1573.14 bits (4072), Expect = 0.000e+0
Identity = 788/788 (100.00%), Postives = 788/788 (100.00%), Query Frame = 0
Query:    1 MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV 788
            MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV
Sbjct:    1 MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV 788          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|585106235|gb|EWM24707.1| (heat shock transcription factor [Nannochloropsis gaditana])

HSP 1 Score: 145.591 bits (366), Expect = 8.645e-33
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 0
Query:   24 STCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRK 117
            +  F++KLF MV  E+  I+SFTPDG SF VK+P RLE+E+LP+Y+RH  F S VRQLNFY+FKK+SKER IWIYRH+ FQ+G+P LLD LKRK
Sbjct:   65 ANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|298708204|emb|CBJ30543.1| (Heat Shock transcription factor [Ectocarpus siliculosus])

HSP 1 Score: 137.887 bits (346), Expect = 1.426e-29
Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query:   20 SSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTS 119
            S+   T FV+KLF MV  E  SI+ F  DG +FEVK+P+RLE +ILP+Y+RH  F S VRQLNFY+FKK+SKER++WIY+H  F+R  P+LL  LKRKT+
Sbjct:  361 SAGSVTSFVRKLFQMVQGECDSIVGFVADGTAFEVKDPRRLEQDILPKYFRHSRFQSLVRQLNFYSFKKISKERSVWIYKHAFFRRDEPELLHALKRKTN 460          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219122184|ref|XP_002181431.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407417|gb|EEC47354.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 114.005 bits (284), Expect = 6.849e-23
Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 0
Query:   27 FVKKLFTMVAVEDPSILSFTPDGKSFEV-KNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKT 118
            F+ KLF MV      ++S+TP+G +F +  +  RLESE LP+Y+RH  F S VRQLNFY+F+K+++ERN+WIY+H  F R RP+ L+M++R+T
Sbjct:   30 FILKLFQMVNGAPDKVISWTPNGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHSLFHRDRPEDLNMVRRRT 122          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|1173942320|gb|OQR91343.1| (HSF-type DNA-binding [Thraustotheca clavata])

HSP 1 Score: 103.219 bits (256), Expect = 2.579e-21
Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 0
Query:   22 SQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKE-----------RNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHH 126
            S +  F+KK F M++     I  + PDG +F VK+PK   + +LP+Y++H +F+SFVRQLNFY F+K  KE           +N W + HE F R +PQL+  +KRKT+N+   HH
Sbjct:    4 STTAIFLKKTFDMISQSPEDIAEWGPDGTTFIVKDPKEFAATMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLMVVMDTSDIKNSWEFYHEHFNRNKPQLMSKIKRKTNNSEEEHH 119          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|223998008|ref|XP_002288677.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975785|gb|EED94113.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 104.76 bits (260), Expect = 7.623e-20
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 0
Query:   27 FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKT 118
            FV KLF MV   +  I+S+ P G++F + +  RLE E LP Y+RH  F S VRQLNFYNF+KV++ER  W+Y H  F R + + L  L+R+T
Sbjct:   25 FVMKLFQMVNGAEDDIVSWVPSGQAFRINDISRLEKETLPSYFRHSRFQSLVRQLNFYNFRKVNRERTFWVYYHPLFHRDQEENLHNLRRRT 116          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|669172691|ref|XP_008621694.1| (hypothetical protein SDRG_17232 [Saprolegnia diclina VS20] >gi|530726637|gb|EQC24879.1| hypothetical protein SDRG_17232 [Saprolegnia diclina VS20])

HSP 1 Score: 96.6709 bits (239), Expect = 1.115e-19
Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 0
Query:   27 FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHEC--FQRGRPQLLDMLKRKTSNA-HHPHHPYNIQHTMG 135
            FV+ L+TM+AVEDP++L++TPDG +FE+++  +L + ILPRY+RH  + SF RQLN++ F+K SK++ + +  + C  F R  PQLL  + R+   A   P  P  I+  +G
Sbjct:   15 FVQSLYTMLAVEDPTVLAWTPDGLAFEIRDQDKLATSILPRYFRHAKYPSFQRQLNYFGFRKWSKQKAV-VCTYGCPFFTRDAPQLLPHVSRRPRQAPPSPPTPVAIEKRLG 125          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219113073|ref|XP_002186120.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582970|gb|ACI65590.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 103.605 bits (257), Expect = 1.197e-19
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 0
Query:   11 ISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV------------SKERNIWIYRHECFQRGRPQLLDMLKRKTSN 120
            +++ A   E +S +  F++K FTM+   DP + +++ DG +F VK+ ++  SE++P +++H +F+SFVRQLNFY F+K+            ++E   W +RHE FQRGRP LL  +++   N
Sbjct:   53 VTRAAKTNEVNSNAPIFLRKTFTMIDSCDPYVAAWSDDGYTFVVKDTEKFASEVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRIKDAETNEESRFWKFRHEKFQRGRPDLLGEIRKSNHN 174          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|167534192|ref|XP_001748774.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163772736|gb|EDQ86384.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 101.679 bits (252), Expect = 3.548e-19
Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 0
Query:   15 ASPPESSSQST---------CFVKKLFTMVAVEDPS---ILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV--------SKERNIWIYRHECFQRGRPQLLDMLKRK--TSNAHHPHHPYNIQHTMGGGRAGEGN 143
            AS P   S+ST          FV KL TM+   DPS   ++S+TP G++F+V N   L  E+LPRYY+HG+FTS VRQLN Y F KV        S ++  W + H C QR RP+LL  +KRK  TSN        +++  M       GN
Sbjct:   17 ASSPRDRSESTDGKDNKGVPAFVSKLLTMI--NDPSTDHLISWTPAGETFKVHNATTLAREVLPRYYKHGNFTSLVRQLNMYGFHKVVGVDTGLRSNDQE-WEFVHPCVQRDRPELLVHIKRKDSTSNTKRKVSREDMESVMQNLETMRGN 164          
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219117185|ref|XP_002179387.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409278|gb|EEC49210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 100.908 bits (250), Expect = 7.040e-19
Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 0
Query:   13 KKASPPESSSQSTC--FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV------------SKERNIWIYRHECFQRGRPQLLDMLKR 116
            +K+SP      ST   F+KK +TM+   D S+ +++ DG +F VK+ +R  ++++P +++H +F+SFVRQLNFY F+K+            S+E   W +RHE FQRGRP LL  +++
Sbjct:   26 RKSSPKVDDGSSTVPMFLKKTYTMIDTCDSSVSAWSHDGLTFVVKDTERFATDVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRLKDVESSEESRYWKFRHEFFQRGRPDLLVEIRK 143          
The following BLAST results are available for this feature:
BLAST of EWM25958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107842|gb|EWM25958.1|0.000e+0100.00Winged helix-turn-helix transcription repressor [N... [more]
gi|585106235|gb|EWM24707.1|8.645e-3364.89heat shock transcription factor [Nannochloropsis g... [more]
gi|298708204|emb|CBJ30543.1|1.426e-2959.00Heat Shock transcription factor [Ectocarpus silicu... [more]
gi|219122184|ref|XP_002181431.1|6.849e-2350.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1173942320|gb|OQR91343.1|2.579e-2142.24HSF-type DNA-binding [Thraustotheca clavata][more]
gi|223998008|ref|XP_002288677.1|7.623e-2048.91predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|669172691|ref|XP_008621694.1|1.115e-1942.86hypothetical protein SDRG_17232 [Saprolegnia dicli... [more]
gi|219113073|ref|XP_002186120.1|1.197e-1936.89predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|167534192|ref|XP_001748774.1|3.548e-1941.06hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|219117185|ref|XP_002179387.1|7.040e-1938.98predicted protein [Phaeodactylum tricornutum CCAP ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4728rna4728Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications