EWM25958.1, cds4716 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|585107842|gb|EWM25958.1| (Winged helix-turn-helix transcription repressor [Nannochloropsis gaditana]) HSP 1 Score: 1573.14 bits (4072), Expect = 0.000e+0 Identity = 788/788 (100.00%), Postives = 788/788 (100.00%), Query Frame = 0
Query: 1 MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV 788
MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV
Sbjct: 1 MEPYNRNTGAISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHHPYNIQHTMGGGRAGEGNGGGEGGQGMPGNEHATKMALAKMTSKEAGRHGGRAPSGGRRSKPSPEFTYQPGFFSPLSPAPLPPSPYAHPQHHPHMQCQPMDLPFQPHGGPREASPSAHGGPTLPLKHGHASLPRNASGDTFSSTSTSDESSYAACGHPPPHHPQHPTHSQPQPQHSPDLQSYGWAKGRLGMDGTPRCTLPPSLPPPPSTPYSTLSRPCPSPPEPGARQPPQCALPPSQGPHITYQRLETHVPPSGRPRPLSSAGGAQGTEAYAPVPGPLSETGSGGHTTRENSLDDSVCSFHRGEGGARGGRGPRSEHVHPPHPSRPLYYVSAEGEGGSTTPPSFPPSQARGQGKMSSLPRFLDQGVAGREGRGPSSPQFTMAVGRTQGPPSLLDARVSKGGKQGVALPPSLPASVGTYNHWAPGTRVVGSSTLPSSFPSSHPSSHGADGSRALSSHPGAGLCKSHRGEREAGHLIQLPHAFRSTPASQRLYPPSPQHRGGRGKEEEESGGEEEEGSQSSLVSSLSSEDEFDSGDLCHDHRQGSCSQQQQAFLEHVGRRQRHHHHHHHHHHHHSHPRHGGEGGRLGKRAAHYGLGPIPRPQEARRKPRSSHSQTARPAAPEKPQDVSVDEEEAAMQMASFRLGRFWGGAMGGRGEGLKKTLEV 788
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|585106235|gb|EWM24707.1| (heat shock transcription factor [Nannochloropsis gaditana]) HSP 1 Score: 145.591 bits (366), Expect = 8.645e-33 Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = 0
Query: 24 STCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRK 117
+ F++KLF MV E+ I+SFTPDG SF VK+P RLE+E+LP+Y+RH F S VRQLNFY+FKK+SKER IWIYRH+ FQ+G+P LLD LKRK
Sbjct: 65 ANTFIRKLFQMVTSENNDIISFTPDGLSFHVKDPVRLENEVLPKYFRHSRFQSLVRQLNFYDFKKISKERVIWIYRHKLFQQGKPHLLDDLKRK 158
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|298708204|emb|CBJ30543.1| (Heat Shock transcription factor [Ectocarpus siliculosus]) HSP 1 Score: 137.887 bits (346), Expect = 1.426e-29 Identity = 59/100 (59.00%), Postives = 76/100 (76.00%), Query Frame = 0
Query: 20 SSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKTS 119
S+ T FV+KLF MV E SI+ F DG +FEVK+P+RLE +ILP+Y+RH F S VRQLNFY+FKK+SKER++WIY+H F+R P+LL LKRKT+
Sbjct: 361 SAGSVTSFVRKLFQMVQGECDSIVGFVADGTAFEVKDPRRLEQDILPKYFRHSRFQSLVRQLNFYSFKKISKERSVWIYKHAFFRRDEPELLHALKRKTN 460
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219122184|ref|XP_002181431.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407417|gb|EEC47354.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 114.005 bits (284), Expect = 6.849e-23 Identity = 47/93 (50.54%), Postives = 69/93 (74.19%), Query Frame = 0
Query: 27 FVKKLFTMVAVEDPSILSFTPDGKSFEV-KNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKT 118
F+ KLF MV ++S+TP+G +F + + RLESE LP+Y+RH F S VRQLNFY+F+K+++ERN+WIY+H F R RP+ L+M++R+T
Sbjct: 30 FILKLFQMVNGAPDKVISWTPNGDAFIIGSDLNRLESETLPQYFRHNRFQSLVRQLNFYSFRKINRERNVWIYKHSLFHRDRPEDLNMVRRRT 122
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|1173942320|gb|OQR91343.1| (HSF-type DNA-binding [Thraustotheca clavata]) HSP 1 Score: 103.219 bits (256), Expect = 2.579e-21 Identity = 49/116 (42.24%), Postives = 71/116 (61.21%), Query Frame = 0
Query: 22 SQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKE-----------RNIWIYRHECFQRGRPQLLDMLKRKTSNAHHPHH 126
S + F+KK F M++ I + PDG +F VK+PK + +LP+Y++H +F+SFVRQLNFY F+K KE +N W + HE F R +PQL+ +KRKT+N+ HH
Sbjct: 4 STTAIFLKKTFDMISQSPEDIAEWGPDGTTFIVKDPKEFAATMLPKYFKHSNFSSFVRQLNFYGFRKSKKEVLMVVMDTSDIKNSWEFYHEHFNRNKPQLMSKIKRKTNNSEEEHH 119
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|223998008|ref|XP_002288677.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975785|gb|EED94113.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 104.76 bits (260), Expect = 7.623e-20 Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = 0
Query: 27 FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHECFQRGRPQLLDMLKRKT 118
FV KLF MV + I+S+ P G++F + + RLE E LP Y+RH F S VRQLNFYNF+KV++ER W+Y H F R + + L L+R+T
Sbjct: 25 FVMKLFQMVNGAEDDIVSWVPSGQAFRINDISRLEKETLPSYFRHSRFQSLVRQLNFYNFRKVNRERTFWVYYHPLFHRDQEENLHNLRRRT 116
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|669172691|ref|XP_008621694.1| (hypothetical protein SDRG_17232 [Saprolegnia diclina VS20] >gi|530726637|gb|EQC24879.1| hypothetical protein SDRG_17232 [Saprolegnia diclina VS20]) HSP 1 Score: 96.6709 bits (239), Expect = 1.115e-19 Identity = 48/112 (42.86%), Postives = 75/112 (66.96%), Query Frame = 0
Query: 27 FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKVSKERNIWIYRHEC--FQRGRPQLLDMLKRKTSNA-HHPHHPYNIQHTMG 135
FV+ L+TM+AVEDP++L++TPDG +FE+++ +L + ILPRY+RH + SF RQLN++ F+K SK++ + + + C F R PQLL + R+ A P P I+ +G
Sbjct: 15 FVQSLYTMLAVEDPTVLAWTPDGLAFEIRDQDKLATSILPRYFRHAKYPSFQRQLNYFGFRKWSKQKAV-VCTYGCPFFTRDAPQLLPHVSRRPRQAPPSPPTPVAIEKRLG 125
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219113073|ref|XP_002186120.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|209582970|gb|ACI65590.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 103.605 bits (257), Expect = 1.197e-19 Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 0
Query: 11 ISKKASPPESSSQSTCFVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV------------SKERNIWIYRHECFQRGRPQLLDMLKRKTSN 120
+++ A E +S + F++K FTM+ DP + +++ DG +F VK+ ++ SE++P +++H +F+SFVRQLNFY F+K+ ++E W +RHE FQRGRP LL +++ N
Sbjct: 53 VTRAAKTNEVNSNAPIFLRKTFTMIDSCDPYVAAWSDDGYTFVVKDTEKFASEVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRIKDAETNEESRFWKFRHEKFQRGRPDLLGEIRKSNHN 174
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|167534192|ref|XP_001748774.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163772736|gb|EDQ86384.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 101.679 bits (252), Expect = 3.548e-19 Identity = 62/151 (41.06%), Postives = 81/151 (53.64%), Query Frame = 0
Query: 15 ASPPESSSQST---------CFVKKLFTMVAVEDPS---ILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV--------SKERNIWIYRHECFQRGRPQLLDMLKRK--TSNAHHPHHPYNIQHTMGGGRAGEGN 143
AS P S+ST FV KL TM+ DPS ++S+TP G++F+V N L E+LPRYY+HG+FTS VRQLN Y F KV S ++ W + H C QR RP+LL +KRK TSN +++ M GN
Sbjct: 17 ASSPRDRSESTDGKDNKGVPAFVSKLLTMI--NDPSTDHLISWTPAGETFKVHNATTLAREVLPRYYKHGNFTSLVRQLNMYGFHKVVGVDTGLRSNDQE-WEFVHPCVQRDRPELLVHIKRKDSTSNTKRKVSREDMESVMQNLETMRGN 164
BLAST of EWM25958.1 vs. NCBI_GenBank
Match: gi|219117185|ref|XP_002179387.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409278|gb|EEC49210.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 100.908 bits (250), Expect = 7.040e-19 Identity = 46/118 (38.98%), Postives = 74/118 (62.71%), Query Frame = 0
Query: 13 KKASPPESSSQSTC--FVKKLFTMVAVEDPSILSFTPDGKSFEVKNPKRLESEILPRYYRHGHFTSFVRQLNFYNFKKV------------SKERNIWIYRHECFQRGRPQLLDMLKR 116
+K+SP ST F+KK +TM+ D S+ +++ DG +F VK+ +R ++++P +++H +F+SFVRQLNFY F+K+ S+E W +RHE FQRGRP LL +++
Sbjct: 26 RKSSPKVDDGSSTVPMFLKKTYTMIDTCDSSVSAWSHDGLTFVVKDTERFATDVIPEFFKHNNFSSFVRQLNFYGFRKIKSDPLRLKDVESSEESRYWKFRHEFFQRGRPDLLVEIRK 143 The following BLAST results are available for this feature:
BLAST of EWM25958.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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