rna4722, rna4722 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4722
Unique Name	rna4722
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	873
Alignment location	CM002464.1:181371..182634 +

Link to JBrowse

Properties


Property Name	Value
Product	Leucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript id	gnl\|cribi\|Naga_100691g2.2998.mrna
Orig protein id	gnl\|cribi\|Naga_100691g2.2998
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:181371..182634 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100691g2	gene4559	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4722	rna4722-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25964.1	cds4710	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:181371..182634+
coding sequence from alignment at CM002464.1:181371..182634+

mRNA sequence

>rna4722 ID=rna4722|Name=rna4722|organism=Nannochloropsis gaditana|type=mRNA|length=873bp
ATCAACCAACGCACTTTCGCACCTCTTATTAACCATACGTGTATCCGTAG
ATGCATTTAATGCCCGGTAAGCGTGGCATCGGCAGCCGCCACCGCAACGA
CAGCCGTTGTCGGCATCGCTTTTGCCTTCAAAAGGACCTTCCTGGCTCCA
TCCTCCTCCTTCACCTCCTCTTGTGCCTCACCACCACCTCATTGCCCATG
CTCGTTCACGCCTTCCCCTTCCATCCTGCGTCTGCTTCACGTCTTTTCCA
GCGAGCAACCTTACGGGCGCGGTACTGGGCGCCTTGGTCCGCATCGACCC
GTCCATTGACCCCAGCTTTTTCTTTTCCCCCTGGGGGTTACGCAGGACGA
GGTGGGGCAAAAGGACGGGCAGGAGGCAACGACAAGGGAAAAGACGGGGG
GAAAGGGGGAAGAGAAGGAGGATATGCCTATTCTGGACGAGCACCGAGGG
GTGGTGGGCGGGAGGATGGACACGAGGCGGGAAACGGCGGACGCCGGGAG
GGAGGAAGGTCTGAACGGGGGAGAGAGAAGGGGGGATATGAAGGGGGGAG
AAACGCAGAGTTCGGAGGTCGAGGAGGAAGGGGAGGAGGAAGAGGAGGAG
GGAAGGAGGCAAGCTGGGGCTCAGGCCGGGGCCAGAAGTGGGAGGGGGGA
AAGAAGGAGGGGGTCCGGGGTGGGAGGTATCAGGAGAGGGATTGGCCGAA
GGGGGGGGGGAGGGGGCGAGAAGGAAGGATGGAGGGAGGGGGACGGAAGG
GAGGATATTCGTCCTCACTGGAATGGTCTTACGATGCCCCTGGTCCAGGG
GATGGGGCAGGGGAGGAGGATTGGGAAGACGGCAGGGAGGGAGGGAGGGA
GGGAGGGAGGGTAGGAGGAGGGA

protein sequence of rna4722

>rna4722-protein ID=rna4722-protein|Name=rna4722|organism=Nannochloropsis gaditana|type=polypeptide|length=357bp
MAEVVPPPSFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTL
DMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAF
ASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYH
VREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSY
PLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGV
GGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHA
MPPGVLFVTDRQSASLAEGPLAGLRKKDINTNTQDLLYRHGAQSISRKVS
CKMTSQT

mRNA from alignment at CM002464.1:181371..182634+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4722 ID=rna4722|Name=rna4722|organism=Nannochloropsis gaditana|type=mRNA|length=1264bp|location=Sequence derived from alignment at CM002464.1:181371..182634+ (Nannochloropsis gaditana)
aTGGCCGAagtcgtccctcccccttcctttcctccccgcttgCCTCGCCT
GCAGCACTTGCTCCTAGGGAACGTGTGGGCGTCCGCCATTGGGGCGGCGG
CATTGGCAGCTGCCTTTGCTTCTGGcgcttgcccctccctcctgaccctg
GACATGTCCTACAACGATTTACACAGGTGCGTGAGCAAAGATTTTCTTTG
GTTGTCGGGACGAAGGTGATGAACACTTAAGCAGGCCCTGGGAAGGGTAC
AGAAACGAGTCGATGTAAACTGATTTGCGTATTCATGTCTTACCTCTCAC
AGCGCCGGAGCTcaagccctcctctccgcctttgCATCCAGCGGCGCGTG
TGCCAAATTACAGAGGTTGAATCTGGCAGGTAACGGTCTGGGGGCACAGG
GGGCGTGGGAGATTGGGAGGGCCTTTGCCAGCGGGTGGGGCAAAGCGCTT
CGCGTGTTGTCCTTGGCGAGCAATGGTTTAGGGGCCGGGGGTGTGGAAGC
GCTCTTAGAAGctgcgagggggggcacagggagggagggagggagggagc
gtgaTCGTCCCTTTCGGTACTACCAtgtgcgggaggaaggcatgaatgtg
ggaggagggagaagggatcATCTGCGCCCAGACttcgcctcgtcgtcctA
TCTGGCAtcgacgtcctcctcctccgccttgccccccccccttcttgtcA
CGGTCCCTTCTGAGGCTTCCTCCTACCCTCTTCAGAGCCTCCAAATCCTA
AATCTCTTTCTCAATGGTGCCGGGGATGAAGGTGCGAGTGAAGTCGCGGC
GGCCTTAGCCCACgggttcctcccctccctccaatttTTGGACCTGGCTG
CCAATCGTATCACTCAAGAAGGGGTGGGTGGGCTCGTGAGTGCGTTGCAG
GAAGATCGGGATGGGattgagggggaaggaggggtataCCTCagagtgag
aaggaggaggaaaaggcctgATTTAAATTTAGCCTTCAACCTGCTTccct
gggagaaggaaagctaTGTACATGCGATGCCTCCGGGAGTGTTATTGTGA
GACAGAAAGCGGCGAAtacgggagggaaacagaGGTGAAAAGACATGGCT
AAAGGTAAAGTGTGACAGATAGGCAGAGCGCGAGCCTAGCAGAAGGTCCC
TTGGCCGGGCTACGTAAAAAAGACATCAATACCAATACTCAAGATTTATT
GTATCGGCATGGAGCTCAAAGTATCTCGCGCAAGGTGTCCTGTAAAATGA
CAAGTCAAACATAG

Coding sequence (CDS) from alignment at CM002464.1:181371..182634+

>rna4722 ID=rna4722|Name=rna4722|organism=Nannochloropsis gaditana|type=CDS|length=3222bp|location=Sequence derived from alignment at CM002464.1:181371..182634+ (Nannochloropsis gaditana)
aTGGCCGAagtcgtccctcccccttcctttcctccccgcttgCCTCGCCT
GCAGCACTTGCTCCTAGGGAACGTGTGGGCGTCCGCCATTGGGGCGGCGG
CATTGGCAGCTGCCTTTGCTTCTGGcgcttgcccctccctcctgaccctg
GACATGTCCTACAACGATTTACACAGCGCCGGAGCTcaagccctcctctc
cgcctttgCATCCAGCGGCGCGTGTGCCAAATTACAGAGGTTGAATCTGG
CAGGTAACGGTCTGGGGGCACAGGGGGCGTGGGAGATTGGGAGGGCCTTT
GCCAGCGGGTGGGGCAAAGCGCTTCGCGTGTTGTCCTTGGCGAGCAATGG
TTTAGGGGCCGGGGGTGTGGAAGCGCTCTTAGAAGctgcgagggggggca
cagggagggagggagggagggagcgtgaTCGTCCCTTTCGGTACTACCAt
gtgcgggaggaaggcatgaatgtgggaggagggagaagggatcATCTGCG
CCCAGACttcgcctcgtcgtcctATCTGGCAtcgacgtcctcctcctccg
ccttgccccccccccttcttgtcACGGTCCCTTCTGAGGCTTCCTCCTAC
CCTCTTCAGAGCCTCCAAATCCTAAATCTCTTTCTCAATGGTGCCGGGGA
TGAAGGTGCGAGTGAAGTCGCGGCGGCCTTAGCCCACgggttcctcccct
ccctccaatttTTGGACCTGGCTGCCAATCGTATCACTCAAGAAGGGGTG
GGTGGGCTCGTGAGTGCGTTGCAGGAAGATCGGGATGGGattgaggggga
aggaggggtataCCTCagagtgagaaggaggaggaaaaggcctgATTTAA
ATTTAGCCTTCAACCTGCTTccctgggagaaggaaagctaTGTACATGCG
ATGCCTCCGGGAGTGTTATTTGTGACAGATAGGCAGAGCGCGAGCCTAGC
AGAAGGTCCCTTGGCCGGGCTACGTAAAAAAGACATCAATACCAATACTC
AAGATTTATTGTATCGGCATGGAGCTCAAAGTATCTCGCGCAAGGTGTCC
TGTAAAATGACAAGTCAAACATAGaTGGCCGAagtcgtccctcccccttc
ctttcctccccgcttgCCTCGCCTGCAGCACTTGCTCCTAGGGAACGTGT
GGGCGTCCGCCATTGGGGCGGCGGCATTGGCAGCTGCCTTTGCTTCTGGc
gcttgcccctccctcctgaccctgGACATGTCCTACAACGATTTACACAG
CGCCGGAGCTcaagccctcctctccgcctttgCATCCAGCGGCGCGTGTG
CCAAATTACAGAGGTTGAATCTGGCAGGTAACGGTCTGGGGGCACAGGGG
GCGTGGGAGATTGGGAGGGCCTTTGCCAGCGGGTGGGGCAAAGCGCTTCG
CGTGTTGTCCTTGGCGAGCAATGGTTTAGGGGCCGGGGGTGTGGAAGCGC
TCTTAGAAGctgcgagggggggcacagggagggagggagggagggagcgt
gaTCGTCCCTTTCGGTACTACCAtgtgcgggaggaaggcatgaatgtggg
aggagggagaagggatcATCTGCGCCCAGACttcgcctcgtcgtcctATC
TGGCAtcgacgtcctcctcctccgccttgccccccccccttcttgtcACG
GTCCCTTCTGAGGCTTCCTCCTACCCTCTTCAGAGCCTCCAAATCCTAAA
TCTCTTTCTCAATGGTGCCGGGGATGAAGGTGCGAGTGAAGTCGCGGCGG
CCTTAGCCCACgggttcctcccctccctccaatttTTGGACCTGGCTGCC
AATCGTATCACTCAAGAAGGGGTGGGTGGGCTCGTGAGTGCGTTGCAGGA
AGATCGGGATGGGattgagggggaaggaggggtataCCTCagagtgagaa
ggaggaggaaaaggcctgATTTAAATTTAGCCTTCAACCTGCTTccctgg
gagaaggaaagctaTGTACATGCGATGCCTCCGGGAGTGTTATTTGTGAC
AGATAGGCAGAGCGCGAGCCTAGCAGAAGGTCCCTTGGCCGGGCTACGTA
AAAAAGACATCAATACCAATACTCAAGATTTATTGTATCGGCATGGAGCT
CAAAGTATCTCGCGCAAGGTGTCCTGTAAAATGACAAGTCAAACATAGaT
GGCCGAagtcgtccctcccccttcctttcctccccgcttgCCTCGCCTGC
AGCACTTGCTCCTAGGGAACGTGTGGGCGTCCGCCATTGGGGCGGCGGCA
TTGGCAGCTGCCTTTGCTTCTGGcgcttgcccctccctcctgaccctgGA
CATGTCCTACAACGATTTACACAGCGCCGGAGCTcaagccctcctctccg
cctttgCATCCAGCGGCGCGTGTGCCAAATTACAGAGGTTGAATCTGGCA
GGTAACGGTCTGGGGGCACAGGGGGCGTGGGAGATTGGGAGGGCCTTTGC
CAGCGGGTGGGGCAAAGCGCTTCGCGTGTTGTCCTTGGCGAGCAATGGTT
TAGGGGCCGGGGGTGTGGAAGCGCTCTTAGAAGctgcgagggggggcaca
gggagggagggagggagggagcgtgaTCGTCCCTTTCGGTACTACCAtgt
gcgggaggaaggcatgaatgtgggaggagggagaagggatcATCTGCGCC
CAGACttcgcctcgtcgtcctATCTGGCAtcgacgtcctcctcctccgcc
ttgccccccccccttcttgtcACGGTCCCTTCTGAGGCTTCCTCCTACCC
TCTTCAGAGCCTCCAAATCCTAAATCTCTTTCTCAATGGTGCCGGGGATG
AAGGTGCGAGTGAAGTCGCGGCGGCCTTAGCCCACgggttcctcccctcc
ctccaatttTTGGACCTGGCTGCCAATCGTATCACTCAAGAAGGGGTGGG
TGGGCTCGTGAGTGCGTTGCAGGAAGATCGGGATGGGattgagggggaag
gaggggtataCCTCagagtgagaaggaggaggaaaaggcctgATTTAAAT
TTAGCCTTCAACCTGCTTccctgggagaaggaaagctaTGTACATGCGAT
GCCTCCGGGAGTGTTATTTGTGACAGATAGGCAGAGCGCGAGCCTAGCAG
AAGGTCCCTTGGCCGGGCTACGTAAAAAAGACATCAATACCAATACTCAA
GATTTATTGTATCGGCATGGAGCTCAAAGTATCTCGCGCAAGGTGTCCTG
TAAAATGACAAGTCAAACATAG

Synonyms

Publications