EWM25964.1, cds4710 (CDS) Nannochloropsis gaditana

Overview
NameEWM25964.1
Unique Namecds4710
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:181371..181546 +
Alignment locationCM002464.1:181673..182416 +
Alignment locationCM002464.1:182481..182634 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25964.1
ProductLeucine-rich repeat, ribonuclease inhibitor subtype
Orig transcript idgnl|cribi|Naga_100691g2.2998.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:181371..181546 +
CM002464.1supercontigCM002464.1:181673..182416 +
CM002464.1supercontigCM002464.1:182481..182634 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003590Leu-rich_rpt_RNase_inh_sub-typ
Homology
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|585107849|gb|EWM25964.1| (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 714.146 bits (1842), Expect = 0.000e+0
Identity = 357/357 (100.00%), Postives = 357/357 (100.00%), Query Frame = 0
Query:    1 MAEVVPPPSFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHAMPPGVLFVTDRQSASLAEGPLAGLRKKDINTNTQDLLYRHGAQSISRKVSCKMTSQT 357
            MAEVVPPPSFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHAMPPGVLFVTDRQSASLAEGPLAGLRKKDINTNTQDLLYRHGAQSISRKVSCKMTSQT
Sbjct:    1 MAEVVPPPSFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDRDGIEGEGGVYLRVRRRRKRPDLNLAFNLLPWEKESYVHAMPPGVLFVTDRQSASLAEGPLAGLRKKDINTNTQDLLYRHGAQSISRKVSCKMTSQT 357          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|553194787|ref|XP_005856030.1| (hypothetical protein NGA_0514900 [Nannochloropsis gaditana CCMP526] >gi|422293022|gb|EKU20323.1| hypothetical protein NGA_0514900 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 279.641 bits (714), Expect = 1.024e-87
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0
Query:    1 MAEVVPPPSFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDR 144
            MAEVVPPPSF PRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDR
Sbjct:  239 MAEVVPPPSFLPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDR 382          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|551589792|ref|XP_005779381.1| (hypothetical protein EMIHUDRAFT_236263 [Emiliania huxleyi CCMP1516] >gi|485631885|gb|EOD26952.1| hypothetical protein EMIHUDRAFT_236263 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 72.7886 bits (177), Expect = 1.952e-10
Identity = 77/257 (29.96%), Postives = 108/257 (42.02%), Query Frame = 0
Query:    9 SFPPRLPRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKA-----LRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALA-HGFLPSLQFLDLAANRITQEGVGGLVSALQE 259
            +F  +  +   L   N+      AA LA   ASGA P L TL +  N +   G +AL++A    GA  +L++L+L  N +G +G     +A A+  GK      L  L L  N +G  G +AL  A     G+EG   R     Y +  E G             D    +  A+     A P                  L+ L+L  N  GDEG   +AAAL   G  P L+ L L+ N+I  EG   L +AL+E
Sbjct:  281 AFKEQFGKATVLFYNNLGWGDAEAAQLAEVLASGAAPRLETLYLGENKIGDEGCKALVAALGKEGAAPRLEKLDLNWNKIGDEGC----KALAAALGKEGAAPRLETLYLGENKIGDEGCKALAAA----LGKEGAAPRLETL-YLYRNEIG-------------DEGCKALAAALGKEGAAP-----------------RLETLSLHRNEIGDEGCKALAAALGKEGAAPRLKELGLSGNQIGDEGCTALAAALKE 498          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|971508361|dbj|GAQ89834.1| (hypothetical protein KFL_005680010, partial [Klebsormidium nitens])

HSP 1 Score: 71.633 bits (174), Expect = 5.353e-10
Identity = 76/238 (31.93%), Postives = 102/238 (42.86%), Query Frame = 0
Query:   31 GAAALAAAFAS-GACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKA-----LRVLSLASNGLGAGGVEALLEAARGGTGREG--GRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALA-HGFLPSLQFLDLAANRITQEGVGGLVSALQE 259
            GA ALA A    G C +L TLD+  ND+   GA+AL +A    G C  LQ LNL  N +G  GA    +A A+  GK      L+ L L S  +G  G +AL  A     G+EG     +        + +EG               A ++ L    + SA                    LQ LNL+ N  G EGA  +A AL   G  P+LQ LDL  ++I  +G   L +A  +
Sbjct:    8 GARALAEALGKEGTCHALQTLDLHSNDIGVEGARALATALGKEGTCPNLQTLNLRYNQIGYDGA----QALATALGKEGTCPNLQTLDLYSYDIGDEGAQALATA----LGKEGTCSNLQTLDLSLNQIGDEGAR-------------ALATALGKEGTCSA--------------------LQTLNLYYNQIGVEGARALATALGKEGTCPNLQTLDLEEHQIGDDGARALATAFAD 204          

HSP 2 Score: 66.6254 bits (161), Expect = 2.261e-8
Identity = 53/130 (40.77%), Postives = 67/130 (51.54%), Query Frame = 0
Query:   15 PRLQHLLLGNVWASAIGAAALAAAFAS-GACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGK-----ALRVLSLASNGLGAGGVEALLEAARGGTGREG 138
            P LQ L L        GA ALA A    G CP+L TLD+   D+   GAQAL +A    G C+ LQ L+L+ N +G +GA    RA A+  GK     AL+ L+L  N +G  G  AL  A     G+EG
Sbjct:   54 PNLQTLNLRYNQIGYDGAQALATALGKEGTCPNLQTLDLYSYDIGDEGAQALATALGKEGTCSNLQTLDLSLNQIGDEGA----RALATALGKEGTCSALQTLNLYYNQIGVEGARALATA----LGKEG 175          

HSP 3 Score: 62.7734 bits (151), Expect = 4.530e-7
Identity = 48/121 (39.67%), Postives = 61/121 (50.41%), Query Frame = 0
Query:   15 PRLQHLLLGNVWASAIGAAALAAAFAS-GACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKA-----LRVLSLASNGLGAGGVEALLEA 129
            P LQ L L +      GA ALA A    G C +L TLD+S N +   GA+AL +A    G C+ LQ LNL  N +G +GA    RA A+  GK      L+ L L  + +G  G  AL  A
Sbjct:   85 PNLQTLDLYSYDIGDEGAQALATALGKEGTCSNLQTLDLSLNQIGDEGARALATALGKEGTCSALQTLNLYYNQIGVEGA----RALATALGKEGTCPNLQTLDLEEHQIGDDGARALATA 201          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|157863880|ref|XP_001687491.1| (conserved hypothetical protein [Leishmania major strain Friedlin] >gi|68223702|emb|CAJ01931.1| conserved hypothetical protein [Leishmania major strain Friedlin])

HSP 1 Score: 67.781 bits (164), Expect = 6.667e-9
Identity = 80/254 (31.50%), Postives = 117/254 (46.06%), Query Frame = 0
Query:   16 RLQHLLLGNVWASAIGAAALAAAFASGACPS---------LLTLDMSYNDLHSAGAQALLSAFASSGACAK-LQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGR---RDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSA 256
            +LQHL L +   + IG  ALA+AF     PS         L +L +  N L   G   LL A +++ AC + L R++L+ N +G  G   + RA+       L V  LA+N LG  G   L EA +    R GG+ +     Y +          GR      +  D + +          AL   L     ++A+     SL+ILNL  N  GDEGA+ V AA+    +PSL+ LD++ N+IT  G   +V+A
Sbjct:   91 QLQHLNLSHNDMTDIGGIALASAFIPNVSPSGQPGQWNRTLFSLVLMGNQL---GDDTLL-AMSNAAACHRDLTRVDLSWNKVGQNGTKCLMRAYQR---NPLCVYQLAANALGDEGTVYLCEALQ----RYGGKSQTTLNLYRNAISCPGTEAVGRLLANSSIVQDVSLAGNTIGFKGVQALQRQL-----TDAAVIASCSLRILNLSNNWIGDEGAASV-AAIIKANIPSLERLDVSENKITDVGATAIVTA 327          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|585104678|gb|EWM23557.1| (Leucine-rich repeat, cysteine-containing subtype [Nannochloropsis gaditana])

HSP 1 Score: 67.3958 bits (163), Expect = 1.315e-8
Identity = 74/246 (30.08%), Postives = 107/246 (43.50%), Query Frame = 0
Query:   29 AIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGRRDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEA-SSYPLQSLQILNLFL------------NGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSALQEDR 261
            A G   LA     GACP L +L+++   +   GA+AL  A  + G    L+ L LAGNG+G++G   + +A   G G  LRVL +  N   A G+  ++EA                     V EE ++VG     H         YLA T   S LP    + +P  A S+  +++L                   N    +GA  +A ALA G +P+L+ L L+ NRI  +G   L  AL + R
Sbjct:  156 ACGTRMLAERLRGGACPELDSLNLTACGIGPGGAEALSIAMQTHGLAPSLRVLRLAGNGMGSRGVTVLAKALKGGAGANLRVLDMDGNKANAVGMLLMIEALSQAA--------------CPVLEE-LSVG-----HNTLTDKGLVYLAKTLVDSKLPQLRRLAIPESAVSTEGIRALARALSLGGGGGLETLDLSDNHLYPQGAEALAIALAQGAVPALRRLILSRNRIYGDGTAALTEALGQGR 381          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|398010008|ref|XP_003858202.1| (hypothetical protein, conserved [Leishmania donovani] >gi|322496408|emb|CBZ31478.1| hypothetical protein, conserved [Leishmania donovani])

HSP 1 Score: 66.6254 bits (161), Expect = 1.837e-8
Identity = 79/254 (31.10%), Postives = 116/254 (45.67%), Query Frame = 0
Query:   16 RLQHLLLGNVWASAIGAAALAAAFASGACPS---------LLTLDMSYNDLHSAGAQALLSAFASSGACAK-LQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGR---RDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSA 256
            +LQHL L +   + IG  ALA+AF     PS         L +L +  N     G   LL A +++ AC + L R++L+ N +G  G   + RA+       L V  LA+N LG  G   L EA +    R GG+ +     Y +          GR      +  D + +          AL   L     ++A+     SL+ILNL  N  GDEGA+ V AA+    +PSL+ LD++ N+IT  G   +V+A
Sbjct:   91 QLQHLNLSHNDMTDIGGIALASAFIPNVSPSGQPGQWNRTLFSLVLMGNKF---GDDTLL-AMSNAAACHRDLTRVDLSWNNVGQNGTKCLMRAYQR---NPLCVYQLAANALGDEGTVYLCEALQ----RYGGKSQTTLNLYRNSISCPGTEAVGRLLANSSIVQDVSLAGNTIGFKGVQALQRQL-----TDAAVIASCSLRILNLSNNWIGDEGAASV-AAIIKANIPSLERLDVSENKITDVGATAIVTA 327          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|585106779|gb|EWM25141.1| (Leucine-rich repeat, ribonuclease inhibitor subtype [Nannochloropsis gaditana])

HSP 1 Score: 66.6254 bits (161), Expect = 1.902e-8
Identity = 51/114 (44.74%), Postives = 60/114 (52.63%), Query Frame = 0
Query:   23 GNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGR 136
            GNV   + G A LA AF  GAC  L  L +  ND+   G Q LLSAFA SGAC  L  L+L  N  G  GA  +  A +SG    LRVL+L    +G  G+ AL EA   G  R
Sbjct:  301 GNVLGPS-GTAHLARAFRRGACTQLRQLHLRNNDVRGQGLQDLLSAFA-SGACPHLTVLSLESNMFGTVGARWLAHALSSGACADLRVLNLNFTFIGEHGMRALAEAFGQGACR 412          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|401414813|ref|XP_003871903.1| (conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] >gi|322488124|emb|CBZ23370.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103])

HSP 1 Score: 66.2402 bits (160), Expect = 2.572e-8
Identity = 78/254 (30.71%), Postives = 116/254 (45.67%), Query Frame = 0
Query:   16 RLQHLLLGNVWASAIGAAALAAAFASGACPS---------LLTLDMSYNDLHSAGAQALLSAFASSGACAK-LQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEAARGGTGREGGRERDRPFRYYHVREEGMNVGGGR---RDHLRPDFASSSYLASTSSSSALPPPLLVTVPSEASSYPLQSLQILNLFLNGAGDEGASEVAAALAHGFLPSLQFLDLAANRITQEGVGGLVSA 256
            +LQHL L +   + IG  ALA+AF     PS         L +L +  N     G   LL A +++ AC + L R++L+ N +G  G   + RA+       L V  LA+N LG  G   L EA +    R GG+ +     Y +          GR      +  D + +          AL   L     ++A+     +L+ILNL  N  GDEGA+ V AA+    +PSL+ LD++ N+IT  G   +V+A
Sbjct:   92 QLQHLNLSHNDMTDIGGIALASAFIPNVSPSGQPGQWNRTLFSLVLMGNKF---GDDTLL-AMSNAAACHRDLTRVDLSWNNVGQNGTKCLMRAYQRN---PLCVYQLAANALGDEGTVYLCEALQ----RYGGKSQTTLNLYRNSISCPGTEAVGRLLANSSIVQDVSLAGNTIGFKGVQALQRQL-----TDAAVIASCTLRILNLSNNWIGDEGAASV-AAIIKANIPSLERLDVSENKITDVGATAIVTA 328          
BLAST of EWM25964.1 vs. NCBI_GenBank
Match: gi|1173954106|gb|OQS01599.1| (hypothetical protein ACHHYP_00600 [Achlya hypogyna])

HSP 1 Score: 66.2402 bits (160), Expect = 2.909e-8
Identity = 44/115 (38.26%), Postives = 57/115 (49.57%), Query Frame = 0
Query:   15 PRLQHLLLGNVWASAIGAAALAAAFASGACPSLLTLDMSYNDLHSAGAQALLSAFASSGACAKLQRLNLAGNGLGAQGAWEIGRAFASGWGKALRVLSLASNGLGAGGVEALLEA 129
            PRL  L L        G  +LA AFA GAC  L TLD+  N L++A  Q LL A   +G   KL  L  AGN +G +G   +  AF  G  + L  + L SN + + G  A+  A
Sbjct:  334 PRLHELNLAWNDIKLRGVTSLAEAFAQGACGQLTTLDLRANSLNAASLQLLLDALG-AGGLPKLLHLVFAGNAIGDRGGKAVAHAFLQGALRHLATIDLKSNMIKSDGCRAIFNA 447          
The following BLAST results are available for this feature:
BLAST of EWM25964.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107849|gb|EWM25964.1|0.000e+0100.00Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
gi|553194787|ref|XP_005856030.1|1.024e-8799.31hypothetical protein NGA_0514900 [Nannochloropsis ... [more]
gi|551589792|ref|XP_005779381.1|1.952e-1029.96hypothetical protein EMIHUDRAFT_236263 [Emiliania ... [more]
gi|971508361|dbj|GAQ89834.1|5.353e-1031.93hypothetical protein KFL_005680010, partial [Klebs... [more]
gi|157863880|ref|XP_001687491.1|6.667e-931.50conserved hypothetical protein [Leishmania major s... [more]
gi|585104678|gb|EWM23557.1|1.315e-830.08Leucine-rich repeat, cysteine-containing subtype [... [more]
gi|398010008|ref|XP_003858202.1|1.837e-831.10hypothetical protein, conserved [Leishmania donova... [more]
gi|585106779|gb|EWM25141.1|1.902e-844.74Leucine-rich repeat, ribonuclease inhibitor subtyp... [more]
gi|401414813|ref|XP_003871903.1|2.572e-830.71conserved hypothetical protein [Leishmania mexican... [more]
gi|1173954106|gb|OQS01599.1|2.909e-838.26hypothetical protein ACHHYP_00600 [Achlya hypogyna... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4722rna4722Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications