|
|
Properties
| Property Name | Value |
|---|
| Product | Protein of unknown function DUF3464 |
| Orig transcript id | gnl|cribi|Naga_100562g2.5790.mrna |
| Orig protein id | gnl|cribi|Naga_100562g2.5790 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:171360..173240 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4720 ID=rna4720|Name=rna4720|organism=Nannochloropsis gaditana|type=mRNA|length=408bp
CGATCTCCCCTTACCCCACAAAACATGTATATGCACAGCGAGGGAAGAAA
AAAGGGAAAAAGGAAGGTGCGAAGCAAGAGATGGGTTATTTTTCGAAGAT
CTGCCTTGTGGCCATGGCTACAACACTTCTGTCTGCCAACTTTCTCGCGA
CTGTGCAAGCCTTCGTGCTTCCCAGCAGCCGCGTCAATGCGGCGTCTTCC
CTCTCGACCAAGATGATGGGCGCGAGCACAGCCGAGGCCGGGGAGAAGAC
GACTATGACGGCAACAGACGTCAAGAACGGGCTCATGGCGAAGATCATGG
AGGACCCCAATCTGAAGCTACCGGATCAGTTCCAGCAAGCACTGACGGAT
ATCTTGGATGGCATGACCGAGGTGGCGGAAGAGACAGGTGAGGGAGGAAG
GGAGGGAG back to topprotein sequence of rna4720 >rna4720-protein ID=rna4720-protein|Name=rna4720|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAF
FPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPS
SSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREM
DMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLF
GFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGS
FWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDR
LSK back to topmRNA from alignment at CM002464.1:171360..173240+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4720 ID=rna4720|Name=rna4720|organism=Nannochloropsis gaditana|type=mRNA|length=1881bp|location=Sequence derived from alignment at CM002464.1:171360..173240+ (Nannochloropsis gaditana)
acccaTAGCTACTCACAGAGCCCTCCACGAGTATGCCAGCAGCCAAGTCT
AGAAGGTCGCGGCTTTCCTACCGATGTCTGGGAGCCTTCTTCGCtttggc
ccccgcccccggggccgccttcgcccctctctccatgccctcccctttcc
tgcaaAGTAGAAGACAcgtcccttccgccttctttcccaaCCCATCGACT
CTTCCCACTCCTTTCGCCTCTGTTTTCCCTCTTCATGCCGCAGCTGAGGA
GCAGGAATCCGGGCAAGGAAAATCCTCGTCGGGACCGAAAGGTTTTGGGA
GAAAGACGCCGGCCCAGGAGCCatcaccctcttcctcccccgcctcaacc
tcttcctcagAGCCAGATGGCCCTTCAAACCCACTGTCAGCCTCGCAGGC
TTCCCTTCAGGAACTTGACCGTTTGAATGCTCGGCAAAAGAAAACGTATT
GGGAAATTCAGAAAGAAATGGAGCGGGAAATGGACATGCGGGAGATCGAC
GAGTACAAGGAAACCCAGCGTTTGCTTGACGAAGGAGTGGTGGGGTACCT
GCCAGAACGCATCTCCAACCGTATGCTCAAACGCCTGTTGCCTTTTATTC
TCTTCCCTGTCCTGGGTGGGATCGGTCTTTTCGGGTTTTATTTGTACTTG
GCGAAAAACACCGAGATCGACGTCCCTCCAGCATTTGTGGCTTTTTCCAC
ACAAGTGCCTTTCCTGGCCGCGTTAGTCGGCATCACGTATTCGATCATGT
CGACGAGTTGGGAGCCAGAGGTaggtaggaggagaggagcgagggggttt
aggaagcggtggagcagagagggaggaaaaagggaagtggagacACAAGA
CCATGTTTCCTGTCCGTGGCTACGGGTTGTTCCATACTCTTGTTGAAATG
TATTTATTCTTAAAGTCAGATGGTATTTGTCTTCTGCCTTTCTCGTTGTC
GCTTCATTGCCTTctactcttcctccctctcaccctccctcccttttcgc
ccTCCCACTTGCGTGCTCTCCACGGCATTCGTGCAGGTGGAAGGCTCATT
CTGGGGGTTTACGGAGTTCAAAGCAAACGTGTTGAATCTTCTAGATTCGT
TGCAGAAGaccaagagggaagagagcgccaaggaaaagatggaaaagTAC
TCGGGTTCCAGAGGACCCAACCGGGCCAAGCGGCGCGAGCTCGATCGCCT
CTCCAAGTAAAGCCAGAGCGCAAAGCGAGCATGCTGGTGCAGTCAGAGGA
GTCGCGTGGTTTAGAGAAAGGAGATGGTCGTGCATTGTGAGAGCCGTGGA
GAGTTTACTTCCAAGAGGCAAGGTTGACTTTAGCTTTACAGCTACTTCAG
GGAAGATTCTGGCAGATTTTAAGATTCTAAGATTCTGGCAGGAAAGTGTA
TTTCATGCCTAAGTTGAGTGGAATTTAGCATTTTGAATGTTGTAAAGGGC
TCGTCAACACGAGCATAGCCCTGATTACGCCCGTCTCATTTTTCtgctcc
cgtccttcccgaGTACATTCTCCacaacctcttccttcttcccctcgctg
CAGAATGCAAGGAAGTCAAGGCACACATGATAATTTAATGGCAGAGCGCC
ATGAGGGTTGCACATCGAAAATCGATTAATTCAGCATCCTGCAGGAGGAA
ACTGTAAGGAGATAATTAAGATGTCCGGATGTAGTCAACTTTTCTCTGCT
GTATCGCACATTTTTTTTACGAGAGAGCGTCAGTGTCAACCTCTACCTGA
GAAAGGGTCACATTATTAAGTGTGCTTTAGACCTTCACATTCAAAACTTG
CATTCGTGAGAAAGCTACCGCTGTAGAAAAAAAGCATGGGCCGAagttaa
cctcccctccccttgaccTTGCTGCATTCTT back to topCoding sequence (CDS) from alignment at CM002464.1:171360..173240+ >rna4720 ID=rna4720|Name=rna4720|organism=Nannochloropsis gaditana|type=CDS|length=1824bp|location=Sequence derived from alignment at CM002464.1:171360..173240+ (Nannochloropsis gaditana)
ATGCCAGCAGCCAAGTCTAGAAGGTCGCGGCTTTCCTACCGATGTCTGGG
AGCCTTCTTCGCtttggcccccgcccccggggccgccttcgcccctctct
ccatgccctcccctttcctgcaaAGTAGAAGACAcgtcccttccgccttc
tttcccaaCCCATCGACTCTTCCCACTCCTTTCGCCTCTGTTTTCCCTCT
TCATGCCGCAGCTGAGGAGCAGGAATCCGGGCAAGGAAAATCCTCGTCGG
GACCGAAAGGTTTTGGGAGAAAGACGCCGGCCCAGGAGCCatcaccctct
tcctcccccgcctcaacctcttcctcagAGCCAGATGGCCCTTCAAACCC
ACTGTCAGCCTCGCAGGCTTCCCTTCAGGAACTTGACCGTTTGAATGCTC
GGCAAAAGAAAACGTATTGGGAAATTCAGAAAGAAATGGAGCGGGAAATG
GACATGCGGGAGATCGACGAGTACAAGGAAACCCAGCGTTTGCTTGACGA
AGGAGTGGTGGGGTACCTGCCAGAACGCATCTCCAACCGTATGCTCAAAC
GCCTGTTGCCTTTTATTCTCTTCCCTGTCCTGGGTGGGATCGGTCTTTTC
GGGTTTTATTTGTACTTGGCGAAAAACACCGAGATCGACGTCCCTCCAGC
ATTTGTGGCTTTTTCCACACAAGTGCCTTTCCTGGCCGCGTTAGTCGGCA
TCACGTATTCGATCATGTCGACGAGTTGGGAGCCAGAGGTGGAAGGCTCA
TTCTGGGGGTTTACGGAGTTCAAAGCAAACGTGTTGAATCTTCTAGATTC
GTTGCAGAAGaccaagagggaagagagcgccaaggaaaagatggaaaagT
ACTCGGGTTCCAGAGGACCCAACCGGGCCAAGCGGCGCGAGCTCGATCGC
CTCTCCAAGTAAATGCCAGCAGCCAAGTCTAGAAGGTCGCGGCTTTCCTA
CCGATGTCTGGGAGCCTTCTTCGCtttggcccccgcccccggggccgcct
tcgcccctctctccatgccctcccctttcctgcaaAGTAGAAGACAcgtc
ccttccgccttctttcccaaCCCATCGACTCTTCCCACTCCTTTCGCCTC
TGTTTTCCCTCTTCATGCCGCAGCTGAGGAGCAGGAATCCGGGCAAGGAA
AATCCTCGTCGGGACCGAAAGGTTTTGGGAGAAAGACGCCGGCCCAGGAG
CCatcaccctcttcctcccccgcctcaacctcttcctcagAGCCAGATGG
CCCTTCAAACCCACTGTCAGCCTCGCAGGCTTCCCTTCAGGAACTTGACC
GTTTGAATGCTCGGCAAAAGAAAACGTATTGGGAAATTCAGAAAGAAATG
GAGCGGGAAATGGACATGCGGGAGATCGACGAGTACAAGGAAACCCAGCG
TTTGCTTGACGAAGGAGTGGTGGGGTACCTGCCAGAACGCATCTCCAACC
GTATGCTCAAACGCCTGTTGCCTTTTATTCTCTTCCCTGTCCTGGGTGGG
ATCGGTCTTTTCGGGTTTTATTTGTACTTGGCGAAAAACACCGAGATCGA
CGTCCCTCCAGCATTTGTGGCTTTTTCCACACAAGTGCCTTTCCTGGCCG
CGTTAGTCGGCATCACGTATTCGATCATGTCGACGAGTTGGGAGCCAGAG
GTGGAAGGCTCATTCTGGGGGTTTACGGAGTTCAAAGCAAACGTGTTGAA
TCTTCTAGATTCGTTGCAGAAGaccaagagggaagagagcgccaaggaaa
agatggaaaagTACTCGGGTTCCAGAGGACCCAACCGGGCCAAGCGGCGC
GAGCTCGATCGCCTCTCCAAGTAA back to top
|