EWM25966.1, cds4708 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|553194769|ref|XP_005856027.1| (hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >gi|422293019|gb|EKU20320.1| hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >gi|585107853|gb|EWM25966.1| Protein of unknown function DUF3464 [Nannochloropsis gaditana]) HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0 Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query: 1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303
MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK
Sbjct: 1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|219116028|ref|XP_002178809.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409576|gb|EEC49507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 110.923 bits (276), Expect = 6.099e-25 Identity = 62/186 (33.33%), Postives = 102/186 (54.84%), Query Frame = 0
Query: 96 EPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKM 281
+ +P+ S +TS+ P N A Q +L+++ R A +K + ++R++ E + + + E +PER++ RM R+LPF+ P G+G+F + Y+A ++ PA VA ST V L LVGITYSI+S SW+P+ EGS G EF N+ N+ D L++++ ++KM
Sbjct: 81 DENPARSAIATSTRSPQQRPN---AGQRALEDMRRQQAEKK------------DAELRKVRELLDADQQVQEAAAA-IPERVAQRMGARMLPFVGLPFFLGMGVFVGFWYMATYRNLEYQPALVAASTIVVLLLGLVGITYSILSASWDPDREGSLLGTDEFSKNIENIRDGLKRSRENAILRDKM 250
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|299470124|emb|CBN78153.1| (all0748 [Ectocarpus siliculosus]) HSP 1 Score: 110.923 bits (276), Expect = 1.145e-24 Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 0
Query: 171 GYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKT 271
G +PE +SNRML R++PF + P LGG+G+F L+ + +P VA++TQ PF AL GITY+IMS SW+ + EG+F+GF E K N N+++ L+++
Sbjct: 185 GSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRS 285
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|873232605|emb|CEM05219.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 99.3673 bits (246), Expect = 5.543e-21 Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 0
Query: 146 MEREMDMREIDEYKETQRLLD-------EGVVGYLPERISNRMLKRLLPFILFPVLGGIGLF--GFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKME 282
ME D RE+ E++E + L +G G +PE +S R++ R++PF L P+ F GF LY + I+ P+ +A+ TQ FL AL G++Y I+S+SWE + EGSFWG EFK N+ + +++T ++ +++ME
Sbjct: 85 MEISKDERELQEFEEYEMRLKQLREAGKDGNAGTMPEVVSQRIISRIVPFFLTPLAFAFSTFIGGFLLYSQFDYRIE--PSIIAYITQFSFLLALGGVSYGILSSSWEEDREGSFWGADEFKRNIKRVASGVRQTVKDTETRQRME 228
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|1072223700|gb|OEU08454.1| (hypothetical protein FRACYDRAFT_196587 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 97.4413 bits (241), Expect = 1.056e-20 Identity = 49/140 (35.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query: 144 KEMEREMDMREIDEYKETQRLLDE--GVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKM 281
K ER ++++I ++ +L+ + G +PE+++ RM KR+LPF+ P+ G +G F + Y+A +++ PA VA ST +L GITYS+MS SW+PE EGS +G EF N+ ++ D ++K +E++
Sbjct: 37 KAEERNAELQKIQNVQDIDQLVRDTGGEAAVIPEKVAQRMGKRMLPFVGIPLFGLVGTFVGFWYMATYRDVEFQPALVAGSTIAVLAVSLGGITYSMMSASWDPEREGSVFGTDEFSRNIGSIKDGFTRSKDNAVVREQI 176
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|922855404|gb|KOO23857.1| (hypothetical protein Ctob_003461 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 99.7525 bits (247), Expect = 6.511e-20 Identity = 64/190 (33.68%), Postives = 95/190 (50.00%), Query Frame = 0
Query: 121 SQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLD-------EGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNL----LDSLQKTKR--EESAKEKMEKYSGSRGPNRAKRRE 297
+ A + DR A ++ I ++M +E + D +K+ L + G +PE +S RMLKR++PF PV GG+ F + Y E+D+PP VAF+TQ L + GITY +MSTSW+ EGS G+ N+ ++ +D + + KR EES EK G +G RRE
Sbjct: 84 TDAGVGNADRRGAEERGR--AIMEQMRKEAGAQPADPFKKKGLALTPEELAPLDPTTGVMPEVVSQRMLKRVVPFAGLPVFGGLLTFVGFYYANTQLELDLPPQIVAFTTQALLLLSFAGITYGVMSTSWDENEEGSLLGWENVGPNIASMQGQEMDRIAEAKRDAEESDAEKAGIRMGRKG-----RRE 266
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|224006524|ref|XP_002292222.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971864|gb|EED90197.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 95.1301 bits (235), Expect = 2.173e-19 Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 0
Query: 147 EREMDMREIDEYKETQRLLDEG-VVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLA-ALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGS---RGPNRAKRRE 297
+R+ +++++ + + T LL E +PE+++ RM KR+LPF+ P+ G F + Y A +++ PA VA ST FLA L+GITYS+MS+SW+ + EGS GF EF NV +L + L +TK +EKM S + R + + RR+
Sbjct: 96 QRDAELQKLRDLRATDSLLKEDPNAAAIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDMEFQPAIVA-STSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTKENALLREKMVGLSEAEIQRAIDESDRRK 250
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|552836087|ref|XP_005849087.1| (hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis] >gi|307108746|gb|EFN56985.1| hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis]) HSP 1 Score: 92.4337 bits (228), Expect = 1.279e-18 Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 0
Query: 164 LLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQK 270
++ G +PE ++NRML+R++ F+ PV GGI LF F+ +L +D+P S+ + F L+GI+Y IMS SW+P EGS G+TEF+ANV LLD ++
Sbjct: 125 MVQYGSSDVVPEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 231
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|552836097|ref|XP_005849088.1| (hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis] >gi|307108747|gb|EFN56986.1| hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis]) HSP 1 Score: 91.2781 bits (225), Expect = 1.650e-18 Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0
Query: 173 LPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQK 270
+PE ++NRML+R++ F+ PV GGI LF F+ +L +D+P S+ + F L+GI+Y IMS SW+P EGS G+TEF+ANV LLD ++
Sbjct: 96 VPEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 193
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|397614064|gb|EJK62573.1| (hypothetical protein THAOC_16807 [Thalassiosira oceanica]) HSP 1 Score: 90.5077 bits (223), Expect = 3.053e-18 Identity = 56/164 (34.15%), Postives = 84/164 (51.22%), Query Frame = 0
Query: 150 MDMREIDEYKETQRLLDE-GVVGYLPERISNRMLKRLLPFILFPVLGGIGLF-GFYL--------------------------YLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYS 285
M++ ++ E +ET R+L E G +PER++ RM KR+LPF+ P+ G + F GF+ Y+A ++ PA VA ++ V L+GITYS++S+SW+ + EGS G EF NV +L D L +TK +EKM S
Sbjct: 1 MELTKLRELRETDRMLQEDGGAAAIPERVAQRMGKRMLPFVGLPLFGSLASFVGFWYVCCPSGRTHAAENDIVTHMLLIILSRYMATYKDMVFQPALVATTSFVFLAIGLIGITYSVLSSSWDDDREGSALGIEEFGKNVNSLKDGLSRTKENALLREKMAGLS 164 The following BLAST results are available for this feature:
BLAST of EWM25966.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|