EWM25966.1, cds4708 (CDS) Nannochloropsis gaditana

Overview
NameEWM25966.1
Unique Namecds4708
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:171392..172129 +
Alignment locationCM002464.1:172396..172569 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25966.1
ProductProtein of unknown function DUF3464
Orig transcript idgnl|cribi|Naga_100562g2.5790.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:171392..172129 +
CM002464.1supercontigCM002464.1:172396..172569 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021855DUF3464
Homology
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|553194769|ref|XP_005856027.1| (hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >gi|422293019|gb|EKU20320.1| hypothetical protein NGA_0514600 [Nannochloropsis gaditana CCMP526] >gi|585107853|gb|EWM25966.1| Protein of unknown function DUF3464 [Nannochloropsis gaditana])

HSP 1 Score: 611.683 bits (1576), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0
Query:    1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303
            MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK
Sbjct:    1 MPAAKSRRSRLSYRCLGAFFALAPAPGAAFAPLSMPSPFLQSRRHVPSAFFPNPSTLPTPFASVFPLHAAAEEQESGQGKSSSGPKGFGRKTPAQEPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGSRGPNRAKRRELDRLSK 303          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|219116028|ref|XP_002178809.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409576|gb|EEC49507.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 110.923 bits (276), Expect = 6.099e-25
Identity = 62/186 (33.33%), Postives = 102/186 (54.84%), Query Frame = 0
Query:   96 EPSPSSSPASTSSSEPDGPSNPLSASQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKM 281
            + +P+ S  +TS+  P    N   A Q +L+++ R  A +K            + ++R++ E  +  + + E     +PER++ RM  R+LPF+  P   G+G+F  + Y+A    ++  PA VA ST V  L  LVGITYSI+S SW+P+ EGS  G  EF  N+ N+ D L++++     ++KM
Sbjct:   81 DENPARSAIATSTRSPQQRPN---AGQRALEDMRRQQAEKK------------DAELRKVRELLDADQQVQEAAAA-IPERVAQRMGARMLPFVGLPFFLGMGVFVGFWYMATYRNLEYQPALVAASTIVVLLLGLVGITYSILSASWDPDREGSLLGTDEFSKNIENIRDGLKRSRENAILRDKM 250          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|299470124|emb|CBN78153.1| (all0748 [Ectocarpus siliculosus])

HSP 1 Score: 110.923 bits (276), Expect = 1.145e-24
Identity = 46/101 (45.54%), Postives = 69/101 (68.32%), Query Frame = 0
Query:  171 GYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKT 271
            G +PE +SNRML R++PF + P LGG+G+F     L+   +  +P   VA++TQ PF  AL GITY+IMS SW+ + EG+F+GF E K N  N+++ L+++
Sbjct:  185 GSIPEIVSNRMLSRMVPFFVLPALGGVGVFVTVYVLSHKYDYTIPAYIVAYATQAPFFVALAGITYAIMSASWDEDREGTFFGFDEAKRNFGNIVEGLRRS 285          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|873232605|emb|CEM05219.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 99.3673 bits (246), Expect = 5.543e-21
Identity = 53/146 (36.30%), Postives = 85/146 (58.22%), Query Frame = 0
Query:  146 MEREMDMREIDEYKETQRLLD-------EGVVGYLPERISNRMLKRLLPFILFPVLGGIGLF--GFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKME 282
            ME   D RE+ E++E +  L        +G  G +PE +S R++ R++PF L P+      F  GF LY   +  I+  P+ +A+ TQ  FL AL G++Y I+S+SWE + EGSFWG  EFK N+  +   +++T ++   +++ME
Sbjct:   85 MEISKDERELQEFEEYEMRLKQLREAGKDGNAGTMPEVVSQRIISRIVPFFLTPLAFAFSTFIGGFLLYSQFDYRIE--PSIIAYITQFSFLLALGGVSYGILSSSWEEDREGSFWGADEFKRNIKRVASGVRQTVKDTETRQRME 228          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|1072223700|gb|OEU08454.1| (hypothetical protein FRACYDRAFT_196587 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 97.4413 bits (241), Expect = 1.056e-20
Identity = 49/140 (35.00%), Postives = 83/140 (59.29%), Query Frame = 0
Query:  144 KEMEREMDMREIDEYKETQRLLDE--GVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKM 281
            K  ER  ++++I   ++  +L+ +  G    +PE+++ RM KR+LPF+  P+ G +G F  + Y+A   +++  PA VA ST      +L GITYS+MS SW+PE EGS +G  EF  N+ ++ D   ++K     +E++
Sbjct:   37 KAEERNAELQKIQNVQDIDQLVRDTGGEAAVIPEKVAQRMGKRMLPFVGIPLFGLVGTFVGFWYMATYRDVEFQPALVAGSTIAVLAVSLGGITYSMMSASWDPEREGSVFGTDEFSRNIGSIKDGFTRSKDNAVVREQI 176          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|922855404|gb|KOO23857.1| (hypothetical protein Ctob_003461 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 99.7525 bits (247), Expect = 6.511e-20
Identity = 64/190 (33.68%), Postives = 95/190 (50.00%), Query Frame = 0
Query:  121 SQASLQELDRLNARQKKTYWEIQKEMEREMDMREIDEYKETQRLLD-------EGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNL----LDSLQKTKR--EESAKEKMEKYSGSRGPNRAKRRE 297
            + A +   DR  A ++     I ++M +E   +  D +K+    L        +   G +PE +S RMLKR++PF   PV GG+  F  + Y     E+D+PP  VAF+TQ   L +  GITY +MSTSW+   EGS  G+     N+ ++    +D + + KR  EES  EK     G +G     RRE
Sbjct:   84 TDAGVGNADRRGAEERGR--AIMEQMRKEAGAQPADPFKKKGLALTPEELAPLDPTTGVMPEVVSQRMLKRVVPFAGLPVFGGLLTFVGFYYANTQLELDLPPQIVAFTTQALLLLSFAGITYGVMSTSWDENEEGSLLGWENVGPNIASMQGQEMDRIAEAKRDAEESDAEKAGIRMGRKG-----RRE 266          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|224006524|ref|XP_002292222.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220971864|gb|EED90197.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 95.1301 bits (235), Expect = 2.173e-19
Identity = 58/156 (37.18%), Postives = 91/156 (58.33%), Query Frame = 0
Query:  147 EREMDMREIDEYKETQRLLDEG-VVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLA-ALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYSGS---RGPNRAKRRE 297
            +R+ +++++ + + T  LL E      +PE+++ RM KR+LPF+  P+ G    F  + Y A   +++  PA VA ST   FLA  L+GITYS+MS+SW+ + EGS  GF EF  NV +L + L +TK     +EKM   S +   R  + + RR+
Sbjct:   96 QRDAELQKLRDLRATDSLLKEDPNAAAIPEKVAQRMGKRMLPFVGVPLFGTFATFIGFWYAAVYKDMEFQPAIVA-STSFVFLAIGLLGITYSVMSSSWDEDREGSGLGFDEFSKNVDSLKEGLSRTKENALLREKMVGLSEAEIQRAIDESDRRK 250          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|552836087|ref|XP_005849087.1| (hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis] >gi|307108746|gb|EFN56985.1| hypothetical protein CHLNCDRAFT_57385 [Chlorella variabilis])

HSP 1 Score: 92.4337 bits (228), Expect = 1.279e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 0
Query:  164 LLDEGVVGYLPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQK 270
            ++  G    +PE ++NRML+R++ F+  PV GGI LF F+ +L     +D+P      S+ + F   L+GI+Y IMS SW+P  EGS  G+TEF+ANV  LLD  ++
Sbjct:  125 MVQYGSSDVVPEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 231          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|552836097|ref|XP_005849088.1| (hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis] >gi|307108747|gb|EFN56986.1| hypothetical protein CHLNCDRAFT_143598 [Chlorella variabilis])

HSP 1 Score: 91.2781 bits (225), Expect = 1.650e-18
Identity = 44/98 (44.90%), Postives = 64/98 (65.31%), Query Frame = 0
Query:  173 LPERISNRMLKRLLPFILFPVLGGIGLFGFYLYLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQK 270
            +PE ++NRML+R++ F+  PV GGI LF F+ +L     +D+P      S+ + F   L+GI+Y IMS SW+P  EGS  G+TEF+ANV  LLD  ++
Sbjct:   96 VPEVVTNRMLRRVILFMGTPVFGGILLFPFFYWLKIKQGVDLPNWVAYLSSSLTFGGGLLGISYGIMSASWDPRREGSLLGWTEFQANVPLLLDRFKR 193          
BLAST of EWM25966.1 vs. NCBI_GenBank
Match: gi|397614064|gb|EJK62573.1| (hypothetical protein THAOC_16807 [Thalassiosira oceanica])

HSP 1 Score: 90.5077 bits (223), Expect = 3.053e-18
Identity = 56/164 (34.15%), Postives = 84/164 (51.22%), Query Frame = 0
Query:  150 MDMREIDEYKETQRLLDE-GVVGYLPERISNRMLKRLLPFILFPVLGGIGLF-GFYL--------------------------YLAKNTEIDVPPAFVAFSTQVPFLAALVGITYSIMSTSWEPEVEGSFWGFTEFKANVLNLLDSLQKTKREESAKEKMEKYS 285
            M++ ++ E +ET R+L E G    +PER++ RM KR+LPF+  P+ G +  F GF+                           Y+A   ++   PA VA ++ V     L+GITYS++S+SW+ + EGS  G  EF  NV +L D L +TK     +EKM   S
Sbjct:    1 MELTKLRELRETDRMLQEDGGAAAIPERVAQRMGKRMLPFVGLPLFGSLASFVGFWYVCCPSGRTHAAENDIVTHMLLIILSRYMATYKDMVFQPALVATTSFVFLAIGLIGITYSVLSSSWDDDREGSALGIEEFGKNVNSLKDGLSRTKENALLREKMAGLS 164          
The following BLAST results are available for this feature:
BLAST of EWM25966.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553194769|ref|XP_005856027.1|0.000e+0100.00hypothetical protein NGA_0514600 [Nannochloropsis ... [more]
gi|219116028|ref|XP_002178809.1|6.099e-2533.33predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299470124|emb|CBN78153.1|1.145e-2445.54all0748 [Ectocarpus siliculosus][more]
gi|873232605|emb|CEM05219.1|5.543e-2136.30unnamed protein product [Vitrella brassicaformis C... [more]
gi|1072223700|gb|OEU08454.1|1.056e-2035.00hypothetical protein FRACYDRAFT_196587 [Fragilario... [more]
gi|922855404|gb|KOO23857.1|6.511e-2033.68hypothetical protein Ctob_003461 [Chrysochromulina... [more]
gi|224006524|ref|XP_002292222.1|2.173e-1937.18predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|552836087|ref|XP_005849087.1|1.279e-1842.06hypothetical protein CHLNCDRAFT_57385 [Chlorella v... [more]
gi|552836097|ref|XP_005849088.1|1.650e-1844.90hypothetical protein CHLNCDRAFT_143598 [Chlorella ... [more]
gi|397614064|gb|EJK62573.1|3.053e-1834.15hypothetical protein THAOC_16807 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4720rna4720Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications