rna472, rna472 (mRNA) Nannochloropsis gaditana

Overview
Namerna472
Unique Namerna472
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length939
Alignment locationCM002455.1:1180160..1180882 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100090g22.8828.mrna
Orig protein idgnl|cribi|Naga_100090g22.8828
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1180160..1180882 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100090g22gene455Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30179.1cds472Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna472rna472-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna472 ID=rna472|Name=rna472|organism=Nannochloropsis gaditana|type=mRNA|length=939bp
ATGGAGGAGAGGGAGGGGGGGGGGAGAGGAGGGAGGGAGAGGGGGGGCGG
GGAGACGGGGGACGAGGGAGGGGAAAGGGAGGAAGGGGGGGAGGAAGGGG
GGGAGGAAGGGGGGGAGGCGAGGCCCCGGTCCGCGCTCCCTGGGCTAGGG
GAGGCCCCCGGATCTGGCCTCTCCAGAGGCGACCGAAGCGGCGGGACGAA
CGGGACAGGCGCGGTGGCGAGGCCCAAAAAAAAGAGCGCGCAGCCTAGAG
CGACGGGGCCGAGCGGGTGGGCCAAGGCCCTGGCGGCCGCCGGAGGGGGT
TCAAGCGGGGGCAGGGTGGTGCAGGGTCGGAGGCCTGGGGGCATCACGCT
GGTGCGTTTCAAATCGACAGAGGGGGAACATGGAAGGCAGGCGCGTGGGG
CCGCTGCTTTCGCTCCGTCGGGACAGCCTGAGGCCTCGACGGCCCCCCGG
GCGGCGGGAATAGACGCGGGTTCATTCCCTGGTCCTCGGGGAGACGGAGT
GGACAGAGGCGGCCTTCCTTCACCGCCATTAACGCATGTTGCCTTCCCGC
GAGAAGCGCCGCCCGGCCTGGGCCTCCCTGTCGTTGCGACGCGGACAGAC
GATAATTTCCCCGCCTTGTCGGGCGCTAGTGAGAGCGCTAGCGGGGGATC
GCACGGACCCCGCGGGGGCTGGATTGGCAAAGTGGCTCGGGACGCCGAGG
AGGAGGAGACCCCGTACGCGAACGGCGGCAACACGACCGTGGGAAAGAAG
AAGAAGAAACAGCAGGCGAAGAAGAAAAATGAGCTTCAGCTAGCGGCCTT
CAATTTTGGATGAAAGTAGACGTAGGATTCCACGTTGAAGTGGACGGGGG
AAATGTTTCACAAATTCGCGAAGATCAAGTGCCACGGCACATGTAAATCA
AGCAAAATAATTTATAGGAATTATGGTTCACATTTCAGG
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protein sequence of rna472

>rna472-protein ID=rna472-protein|Name=rna472|organism=Nannochloropsis gaditana|type=polypeptide|length=211bp
MPKESDRVGGTEGGGGPRGGYHSNSGRRDNERHEKVEQPESRRGGGPRGQ
GRSYRRGGGVGRGNGGGRFSMDGNQSQADRRESRLPPTPGLAESFATGMA
LKEDGSFQNNVGPEALALLAQINGEAEAHEELGHVARPVEEVPARRESSE
GMVCAVCTEQLDDRIHRPAMGACEHVDTCALCYLRLRRLLGDQVRGGRDG
RRKGGREGGRR
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mRNA from alignment at CM002455.1:1180160..1180882-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna472 ID=rna472|Name=rna472|organism=Nannochloropsis gaditana|type=mRNA|length=723bp|location=Sequence derived from alignment at CM002455.1:1180160..1180882- (Nannochloropsis gaditana)
AATGTAATATATTTAATCTCCCAAAACCAATTTCCTTCATTTCTATGTCG
GTCGAAAATGCAGAATAGGACGTTCGCGTTCTGATTCATCATGCCGAAAG
AAAGCGACCGCGTCGGTGGTACCGAAGGAGGCGGTGGGCCCCGTGGTGGG
TATCACAGTAACTCAGGGAGGAGAGACAACGAGAGACACGAAAAGGTGGA
GCAACCGGAGAGCCGTAGAGGCGGTGGCCCCCGTGGACAGGGTCGTAGCT
ACAGGAGAGGTGGAGGTGTCGGGCGTGGGAATGGGGGTGGCAGATTTAGT
ATGGATGGCAATCAGAGTCAAGCGGATCGGAGAGAGAGCCGCCTGCCCCC
GACACCCGGTCTGGCAGAATCATTCGCCACGGGCATGGCTTTAAAGGAAG
ACGGAAGCTTCCAGAACAATGTGGGACCAGAGGCATTGGCTTTGTTGGCA
CAGATCAACGGGGAAGCTGAGGCACACGAGGAGCTGGGGCATGTCGCCCG
TCCCGTGGAGGAGGTCCCCGCCCGGCGGGAGTCGAGCGAGGGGATGGTGT
GCGCAGTATGCACGGAGCAACTCGACGACAGGATACATCGACCGGCTATG
GGGGCATGCGAGCACGTCGATACCTGTGCTCTGTGCTATTTGAGGTTGCG
ACGTCTGCTGGGCGATCAAGTGAGAGGAGGGAGGGACGGACGGAGGAAGG
GAGGGAGGGAGGGAGGGAGGAGG
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Coding sequence (CDS) from alignment at CM002455.1:1180160..1180882-

>rna472 ID=rna472|Name=rna472|organism=Nannochloropsis gaditana|type=CDS|length=633bp|location=Sequence derived from alignment at CM002455.1:1180160..1180882- (Nannochloropsis gaditana)
ATGCCGAAAGAAAGCGACCGCGTCGGTGGTACCGAAGGAGGCGGTGGGCC
CCGTGGTGGGTATCACAGTAACTCAGGGAGGAGAGACAACGAGAGACACG
AAAAGGTGGAGCAACCGGAGAGCCGTAGAGGCGGTGGCCCCCGTGGACAG
GGTCGTAGCTACAGGAGAGGTGGAGGTGTCGGGCGTGGGAATGGGGGTGG
CAGATTTAGTATGGATGGCAATCAGAGTCAAGCGGATCGGAGAGAGAGCC
GCCTGCCCCCGACACCCGGTCTGGCAGAATCATTCGCCACGGGCATGGCT
TTAAAGGAAGACGGAAGCTTCCAGAACAATGTGGGACCAGAGGCATTGGC
TTTGTTGGCACAGATCAACGGGGAAGCTGAGGCACACGAGGAGCTGGGGC
ATGTCGCCCGTCCCGTGGAGGAGGTCCCCGCCCGGCGGGAGTCGAGCGAG
GGGATGGTGTGCGCAGTATGCACGGAGCAACTCGACGACAGGATACATCG
ACCGGCTATGGGGGCATGCGAGCACGTCGATACCTGTGCTCTGTGCTATT
TGAGGTTGCGACGTCTGCTGGGCGATCAAGTGAGAGGAGGGAGGGACGGA
CGGAGGAAGGGAGGGAGGGAGGGAGGGAGGAGG
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Synonyms
Publications