EWM30179.1, cds472 (CDS) Nannochloropsis gaditana

Overview
NameEWM30179.1
Unique Namecds472
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1180160..1180792 -

Link to JBrowse

Properties
Property NameValue
Start range1180160
Start range.
Protein idEWM30179.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100090g22.8828.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1180160..1180792 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
Homology
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BLAST of EWM30179.1 vs. NCBI_GenBank
Match: gi|585112837|gb|EWM30179.1| (hypothetical protein Naga_100090g22, partial [Nannochloropsis gaditana])

HSP 1 Score: 414.461 bits (1064), Expect = 2.716e-146
Identity = 211/211 (100.00%), Postives = 211/211 (100.00%), Query Frame = 0 
Query:    1 MPKESDRVGGTEGGGGPRGGYHSNSGRRDNERHEKVEQPESRRGGGPRGQGRSYRRGGGVGRGNGGGRFSMDGNQSQADRRESRLPPTPGLAESFATGMALKEDGSFQNNVGPEALALLAQINGEAEAHEELGHVARPVEEVPARRESSEGMVCAVCTEQLDDRIHRPAMGACEHVDTCALCYLRLRRLLGDQVRGGRDGRRKGGREGGRR 211
            MPKESDRVGGTEGGGGPRGGYHSNSGRRDNERHEKVEQPESRRGGGPRGQGRSYRRGGGVGRGNGGGRFSMDGNQSQADRRESRLPPTPGLAESFATGMALKEDGSFQNNVGPEALALLAQINGEAEAHEELGHVARPVEEVPARRESSEGMVCAVCTEQLDDRIHRPAMGACEHVDTCALCYLRLRRLLGDQVRGGRDGRRKGGREGGRR
Sbjct:    1 MPKESDRVGGTEGGGGPRGGYHSNSGRRDNERHEKVEQPESRRGGGPRGQGRSYRRGGGVGRGNGGGRFSMDGNQSQADRRESRLPPTPGLAESFATGMALKEDGSFQNNVGPEALALLAQINGEAEAHEELGHVARPVEEVPARRESSEGMVCAVCTEQLDDRIHRPAMGACEHVDTCALCYLRLRRLLGDQVRGGRDGRRKGGREGGRR 211
The following BLAST results are available for this feature:
BLAST of EWM30179.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585112837|gb|EWM30179.1|2.716e-146100.00hypothetical protein Naga_100090g22, partial [Nann... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna472rna472Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications