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Properties
| Property Name | Value |
|---|
| Product | short-chain dehydrogenase reductase sdr |
| Orig transcript id | gnl|cribi|Naga_101394g1.736.mrna |
| Orig protein id | gnl|cribi|Naga_101394g1.736 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:166927..168279 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4718 ID=rna4718|Name=rna4718|organism=Nannochloropsis gaditana|type=mRNA|length=1644bp
ATGGGGGACACAAGCGATGAGGACGAGCTGCCTCTGTCGGCCTTGCTCCC
CTCGAAGCGGAAGGAGGCGTCGCAAACGAGCGGGAAAAAGAAGAAGAAAA
AACGGCGGCCCATGTCCCCCTCGGACTTGGCCACCTTGTACCGTATTCCC
AAACGGGAAGCACCGGCCCTGGAAGAGGCGTTGATGGCCTGGAGGGACGC
GTACTCGGAGGCAGAGAACATTGCAATGAGCCACCGGGTTTTGAATACGC
GGCAGATCACTCAGTTGGCAGCTTTGTGTCCCACCACGCTGGCCGAACTG
GAAGTCATCTCCGGCTTTGGGAGTATGGAGGGAGGGTTGGAGAGTGGAGG
GTAGAAGGGATGGATCGAAGTACGACAGGGTCTTGCTCATTCGTGACAAG
TTTTCATTATTGAGTCAAAGATTGCCTCCCTTGCCCGGCTTCTCCCTCTA
CTTCTCACCCGAACTTTTTTTAACCACCCTTTTTCTTTCCCCAGTGGATG
GGAGGGTGCAGCGTATAGGCAAGCAAGTCTTGGGGGTCATCGAGAATTTT
CTCCGCCAGCGGAACTTGACGCCCAAGAACATCGACCTCTCCGTCTTCAT
CACCGGAGTGCAGGCGGGGGAAAGCAGCTGGGAAGGAGGGGGCTGGGGAG
GGAGTTTCCATCAGTTCGCGGCGCCAGAAAATTACCAGGTGTCAGTGCTT
GCCAGCCAGTCATCGCCGACAAGGGAGGGACGGGGGAAAGAGGAGGGAAA
GAAGGTAGGAATTCGGGGAAGAGAAGTAAGTGCGCATCGAAATGTTGGCA
CGGCAGCTGCTGGACGGCAGGATTGGGTAGTTGAGGGAAGTGGTGGAGCA
GCAGGAGGGGTTGGGACAGGCACTGGCGCAAACATGGGCCGCGGCCCCTT
TACGTACGATGTTGACGACGTGGATACTGCTCTCTTGCTGGCAGCAGCCG
AAGAGGCGGAGAGGGGGATGGAGGGAAGGGCCCCGCCTATGAAGGATGCA
GGACACGGAGCTTTCTCGTCCGATGTACCGGCGAGGGAGATTTGGGAGCA
GGCATCGACCCGGCGACTCCTGGGAGAGGAGGAAGCCGGTGGTGCGGTGG
ACGAAGATTTTTACACTGTAGGGTAGGGCGGGGCGTCGGCATGGAAGACA
CAAGGGGCAAAGGACAGGGTGGCCGTGGTTGTGGGTGGGGTGCCTCGCTG
TCAGATTGTGCATTCGAGATGGCACGGAAATGGGATCGAAACGGAATCAC
GCGTCGGGAGAGGTGGGAGAATGACATGTACATATGGAAACTGTGCTCGC
TCCCAAGCAGAAAAAAAGCAGGGGTTGAAATTGGTGCCGTTGCTCGGAAA
GCGACTCCCGTTGCTTCATCCCCGGAAAAGTTATTGTTACTCAATCGTAC
TCTCACTCCTGCGTGCGCGGGTTCCGCTTGCCTGCGCCCTTTTTGGTCCT
AGGAAGAGCAAGGCAATGGAGGGAGGAGACCGAAGAGGAGCCACACCAGG
TGTAGATTTTGAGAAATTGCAACAAAGTATGGCTAAACGGAAATTAGAAG
GCCACGCTGCTGGCAACGCCATGCTCCTTGCCACATAAAAAGCGACTAGC
CACAAAGGCGAACTTGTCCAAAAGTAGTATGTTACGCAGAATCA back to topprotein sequence of rna4718 >rna4718-protein ID=rna4718-protein|Name=rna4718|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGR
KYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRD
LGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQD
ATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRL
INIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGF
CRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCG
GMLEVGRFWERGGGGGG back to topmRNA from alignment at CM002464.1:166927..168279- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna4718 ID=rna4718|Name=rna4718|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp|location=Sequence derived from alignment at CM002464.1:166927..168279- (Nannochloropsis gaditana)
AAGCAAGGAGGAATGTGAATGCTTAAGTACGAAGGAATGTTATGCTCGGT
GTTGTATATTCCCGTCCATGTCCTCGGCTTGTCTTGGAAATGCCAAAAGC
AGAGAATCCGGGCGACCAACCGGAAGGCGAGAGGCAGGTCCGATCACGAG
ACGAGCCTCTTACGACTGCCTGTGGATTGGGCCGTTTTTCATGTACATGG
AATCGAAAACCGGTGCCCGATGTAGACCAAGCTCTGCATTCAATAGGACC
TGTAGAAGGCCGTAAATCGACGGCACAGGAAACATATGAAAAGGATGGTG
GCACCAGCCCGAGGGATGGACAAATTCCGCTGCTAGTGGAGTTCAGAATT
TGGCTGCGACCGCTTTGTTCTCTTTTCCACGTCTCCATTACCCTCTATAA
TTGATGCACGCAAGCCACTTAAATTTGACTCTCCCACCGCAGGGCATGGA
GCTGCCTCCCTTGGAGGTGGTGATCAAACTTATCCTTCTTCAACTCTGTG
GGACTTTGCTCCTCTTCCTCCTGATTCGACAGTGTTTTGTTTGGAAAGGC
CGCAAATATTTCCCTCCCCTTACTAGTGGGAGCGTTCTTTTGACTGGGAC
GAGCAGCGGGATCGGTCGCACTGCTGCCGTGTACTTGGCTCAACGTGGTT
TTACGGTTCTGGCGGGCGTTCGGAAAGAAAGCGATGCACAAGCCTTGAGA
GATTTGGGCGTCTCTGGGATCCATCCAGTGATTATTGACGTCGCGAAAGC
AAGCAGCGTGGAAGCCTGTCGTCAACACGTGCTCTCCCTTTTGGACGCAA
AGACCGTGCCTCCCTTGGTGGGGGTAGTGAACAACGCAGGTCTTCTCCAA
GATGCCACCGTAGAATTCCACGACATGGCTCAGATGCGTCACATGTTCGA
GGTGAACTACTTTGGGTTAATCTCCGTCTCCTCCGCCTTTCTTCCCCTCC
TCCGCCGTCCGCCGGGGTCCTCCTCTCCCCACCCGAACCACCAGGGCCGT
CTAATCAACATTGGGTCGGTGAGCGGGAAGGTATCCTTCCCGAGGTACGG
GGCCTATGCGGCCAGCAAGCACGCGGTGGAGGCCGTCACCGACTCCCTCC
GCGCGGAGTTGGACCCGGCTGGCGTGAGTGTCTCGCTTGTCCAGCCAGGA
TTTTGCCGGACCGAGCTCTTTATCCGGGGGGTGGTGCGCGAGAAGAAAGA
GGCGCACGCGGCGGGGCAACAGATTGTGAGCCGGGGGGGTGGGGGGGCGT
GGAGGGGAGAAAGGGGAAGGGAGGGAGGGACGGTTGAAAGGAGATGGTGC
GGAGGGATGCTGGAAGTAGGAAGGTTTTGGGAGAGAGGGGGGGGGGGGGG
GGG back to topCoding sequence (CDS) from alignment at CM002464.1:166927..168279- >rna4718 ID=rna4718|Name=rna4718|organism=Nannochloropsis gaditana|type=CDS|length=950bp|location=Sequence derived from alignment at CM002464.1:166927..168279- (Nannochloropsis gaditana)
ATGCACGCAAGCCACTTAAATTTGACTCTCCCACCGCAGGGCATGGAGCT
GCCTCCCTTGGAGGTGGTGATCAAACTTATCCTTCTTCAACTCTGTGGGA
CTTTGCTCCTCTTCCTCCTGATTCGACAGTGTTTTGTTTGGAAAGGCCGC
AAATATTTCCCTCCCCTTACTAGTGGGAGCGTTCTTTTGACTGGGACGAG
CAGCGGGATCGGTCGCACTGCTGCCGTGTACTTGGCTCAACGTGGTTTTA
CGGTTCTGGCGGGCGTTCGGAAAGAAAGCGATGCACAAGCCTTGAGAGAT
TTGGGCGTCTCTGGGATCCATCCAGTGATTATTGACGTCGCGAAAGCAAG
CAGCGTGGAAGCCTGTCGTCAACACGTGCTCTCCCTTTTGGACGCAAAGA
CCGTGCCTCCCTTGGTGGGGGTAGTGAACAACGCAGGTCTTCTCCAAGAT
GCCACCGTAGAATTCCACGACATGGCTCAGATGCGTCACATGTTCGAGGT
GAACTACTTTGGGTTAATCTCCGTCTCCTCCGCCTTTCTTCCCCTCCTCC
GCCGTCCGCCGGGGTCCTCCTCTCCCCACCCGAACCACCAGGGCCGTCTA
ATCAACATTGGGTCGGTGAGCGGGAAGGTATCCTTCCCGAGGTACGGGGC
CTATGCGGCCAGCAAGCACGCGGTGGAGGCCGTCACCGACTCCCTCCGCG
CGGAGTTGGACCCGGCTGGCGTGAGTGTCTCGCTTGTCCAGCCAGGATTT
TGCCGGACCGAGCTCTTTATCCGGGGGGTGGTGCGCGAGAAGAAAGAGGC
GCACGCGGCGGGGCAACAGATTGTGAGCCGGGGGGGTGGGGGGGCGTGGA
GGGGAGAAAGGGGAAGGGAGGGAGGGACGGTTGAAAGGAGATGGTGCGGA
GGGATGCTGGAAGTAGGAAGGTTTTGGGAGAGAGGGGGGGGGGGGGGGGG back to top
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