EWM25967.1, cds4706 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|585107856|gb|EWM25967.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana]) HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query: 1 MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG 317
MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG
Sbjct: 1 MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG 317
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|514686056|ref|XP_004990606.1| (oxidoreductase [Salpingoeca rosetta] >gi|326431692|gb|EGD77262.1| oxidoreductase [Salpingoeca rosetta]) HSP 1 Score: 175.252 bits (443), Expect = 7.171e-49 Identity = 99/253 (39.13%), Postives = 156/253 (61.66%), Query Frame = 0
Query: 29 LQLC--GTLL--LFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSR 277
+ LC G L+ L +L+ FV+ KYFP SG++L+TGTS+GIGR AAV LA++G+TV A VRK++D +L+ GV+ + P+++DV K + + + K L+G+VNNAG+ +E HD+ ++R MFEVN FG++SV+ AFLP++R ++GR++N+GS++G ++ P +Y+A+K +E + D+LR E+ P GVSVS+V+P + T + K AA + VSR
Sbjct: 1 MSLCKPGVLMGILAVLLYLLFVFP-VKYFPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTI-----KKGGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRE----------NKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVST------AIASKSTGEAAATRWVSR 231
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|167525509|ref|XP_001747089.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774384|gb|EDQ88013.1| predicted protein [Monosiga brevicollis MX1]) HSP 1 Score: 169.088 bits (427), Expect = 1.448e-46 Identity = 96/226 (42.48%), Postives = 140/226 (61.95%), Query Frame = 0
Query: 32 CGTLLLFLLIRQCF-VWK-GRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTEL 255
C ++ + +L + VW+ R + G VL+TG SSGIGR AA+ LA+ G+ V VRKE DA +R LG+ +HP+I+DV + ++ + +S LD PL+ +VNNAG+ A +E +DM ++R+ FEVN FGL+ + AFLPLLR ++GR+INIGSV+G V Y+ +K A+E ++DSLR EL P GVSVSLV+P + +TE+
Sbjct: 4 CWSVTVVVLAAALYAVWELPRPTYHVHEQGVVLVTGASSGIGRHAAIELAKLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVE-TISKLDQ----PLIALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLLRA----------NKGRIINIGSVAGLVGMEGSAVYSGTKFALEGISDSLRRELFPLGVSVSLVEPAYVKTEI 214
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|740240756|ref|WP_038081826.1| (short-chain dehydrogenase/reductase [Tolypothrix bouteillei] >gi|744449252|gb|KIE09995.1| short-chain dehydrogenase [Tolypothrix bouteillei VB521301]) HSP 1 Score: 162.925 bits (411), Expect = 1.620e-44 Identity = 86/193 (44.56%), Postives = 126/193 (65.28%), Query Frame = 0
Query: 57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPG 249
T G+V++TG S+G+GR A+ L + G+ V AGVRKE DA++L+ + + P+IIDV ++ + + V + + L+G+VNNAG+L D VE+ ++ ++R FEVN G I+V+ AFLP +R+ +GR+INIGSVSGKVS P + A ASK A+EA TD+LR EL+P G+ V LV+PG
Sbjct: 5 TKGAVVITGASTGVGRATALLLDKEGYRVFAGVRKEKDAESLKLVASGNLTPIIIDVTQSEQIRNAAKLVSQTIGNEG---LIGLVNNAGILIDGPVEYIELDELRWQFEVNVIGQIAVTQAFLPAIRKA----------KGRIINIGSVSGKVSSPFFSALCASKFAMEAFTDALRMELNPWGIEVILVEPG 184
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|585103254|gb|EWM22688.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana]) HSP 1 Score: 162.54 bits (410), Expect = 3.461e-44 Identity = 91/203 (44.83%), Postives = 128/203 (63.05%), Query Frame = 0
Query: 54 PPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELF 256
PP ++++G S+GIGR AA YLA+ GFTVLAGVR+E+D + LR + +HP+I+DV AS V A + +A P+ G+VNNAGL VE DM + R +FEVN +I ++ AF+PLLRR PG GR++N+GS +G ++ G YA+SKHAVE +TDS+R EL +SVSLV PG ++ ++
Sbjct: 32 PPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERA----EALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPG---------GRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMW 221
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|504915856|ref|WP_015102958.1| (short-chain dehydrogenase/reductase [Saccharothrix espanaensis] >gi|407885203|emb|CCH32846.1| Short-chain dehydrogenase/reductase [Saccharothrix espanaensis DSM 44229]) HSP 1 Score: 161.384 bits (407), Expect = 5.948e-44 Identity = 96/207 (46.38%), Postives = 129/207 (62.32%), Query Frame = 0
Query: 61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEA 267
V++TG S+G+G +AA LA+RGF VLAGVR++ DA A+R +G+ P+I+D+ K+ VEA V A L +VNNAG+ +A VE M Q R +FEVN FG I+++ A LP L R +GR+INI SV GKV+ YGAYA +K A+EAV+DSLR E+ P GV V +V+PG RTE+ RG+ K A
Sbjct: 11 VVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGVEPIILDITKSEQVEALAARV-----AGDPRALHALVNNAGIQVNAPVEALPMTQWRWVFEVNLFGHIAITQALLPALLR----------SKGRVINISSVGGKVAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMATRGIATANKLA 199
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1027893107|ref|WP_063783654.1| (dehydrogenase [Streptomyces sp. XY152]) HSP 1 Score: 160.229 bits (404), Expect = 2.029e-43 Identity = 96/204 (47.06%), Postives = 128/204 (62.75%), Query Frame = 0
Query: 57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
T +++TG S+G+G +AA LA+RGF VLAGVR++ DA+A+R +GI PVI+D+ K+ VEA V A L +VNNAG+ +A VE M + R +FEVN FG I+V+ A LP L R +GR+INI SV GK + YGAYA +K A+EAV+DSLR E+ P GV V +V+PG RTE+ RGV
Sbjct: 7 TQKLIVVTGASTGMGASAARELARRGFHVLAGVRRDRDAEAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGVQVNAPVEALPMTEWRRVFEVNLFGHIAVTQALLPALLRS----------KGRVINISSVGGKFAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMAARGV 192
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1011071702|ref|WP_062012445.1| (oxidoreductase [Streptomyces sporocinereus]) HSP 1 Score: 160.229 bits (404), Expect = 2.072e-43 Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 0
Query: 61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
V++TG S+G+G +AA LA+RGF VLAGVR++ DA A+R +GI PVI+D+ K+ VEA V A L +VNNAG+ +A VE MA+ R +FEVN FG I+V+ A LP L R +GR+INI S+ GK + YGAYA +K A+EAV+DSLR E+ P GV V +V+PG RTE+ RG+
Sbjct: 11 VVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGIQVNAPVEALPMAEWRRVFEVNLFGHIAVTQALLPALLR----------GKGRVINISSIGGKFAMATYGAYAGTKFALEAVSDSLRREVGPLGVQVVVVEPGGIRTEMAARGI 192
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1027864500|ref|WP_063756561.1| (MULTISPECIES: dehydrogenase [Streptomyces]) HSP 1 Score: 159.458 bits (402), Expect = 4.009e-43 Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 0
Query: 57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
T +++TG S+G+G +AA LA+RGF VLAGVR++ DA A+R +GI PVI+D+ K+ VEA V A L +VNNAG+ +A VE M + R +FEVN FG I+V+ A LP L R +GR+INI SV GK + YGAYA +K A+EAV+DSLR E+ P GV V +V+PG RTE+ RGV
Sbjct: 7 TQKLIVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGVQVNAPVEALPMTEWRRVFEVNLFGHIAVTQALLPALLRS----------KGRVINISSVGGKFAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMAARGV 192
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1158572595|ref|WP_079100706.1| (dehydrogenase [Streptomyces sp. Root55]) HSP 1 Score: 159.458 bits (402), Expect = 4.805e-43 Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = 0
Query: 61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVV 261
+++TG S+G+G +AA LA +GF VLAGVR++ DA A+R +GI PVI+D+ K+ VEA V A+ L +VNNAG+ +A VE MAQ R +FEVN FG I+V+ A LP L R +GR+INI SV GKV+ YGAYA +K A+EAV+DSLR E+ P GV V +V+PG RTE+ RG+
Sbjct: 11 IVVTGASTGMGASAARELAGQGFHVLAGVRRDRDADAIRS---AGIEPVILDITKSDHVEALAARV-----ARDPRALHALVNNAGIQVNAPVESLPMAQWRWVFEVNLFGHIAVTQALLPALLR----------SKGRVINISSVGGKVAMATYGAYAGAKFALEAVSDSLRREVAPLGVHVVVVEPGGVRTEMAARGIT 193 The following BLAST results are available for this feature:
BLAST of EWM25967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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