EWM25967.1, cds4706 (CDS) Nannochloropsis gaditana

Overview
NameEWM25967.1
Unique Namecds4706
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:166927..167876 -

Link to JBrowse

Properties
Property NameValue
Start range166927
Start range.
Protein idEWM25967.1
Productshort-chain dehydrogenase reductase sdr
Partialtrue
Orig transcript idgnl|cribi|Naga_101394g1.736.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:166927..167876 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016491oxidoreductase activity
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR020904Sc_DH/Rdtase_CS
IPR016040NAD(P)-bd_dom
IPR013968PKS_KR
IPR002198DH_sc/Rdtase_SDR
IPR002347Glc/ribitol_DH
Homology
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|585107856|gb|EWM25967.1| (short-chain dehydrogenase reductase sdr, partial [Nannochloropsis gaditana])

HSP 1 Score: 640.573 bits (1651), Expect = 0.000e+0
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query:    1 MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG 317
            MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG
Sbjct:    1 MHASHLNLTLPPQGMELPPLEVVIKLILLQLCGTLLLFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSRGGGGAWRGERGREGGTVERRWCGGMLEVGRFWERGGGGGG 317          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|514686056|ref|XP_004990606.1| (oxidoreductase [Salpingoeca rosetta] >gi|326431692|gb|EGD77262.1| oxidoreductase [Salpingoeca rosetta])

HSP 1 Score: 175.252 bits (443), Expect = 7.171e-49
Identity = 99/253 (39.13%), Postives = 156/253 (61.66%), Query Frame = 0
Query:   29 LQLC--GTLL--LFLLIRQCFVWKGRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEAHAAGQQIVSR 277
            + LC  G L+  L +L+   FV+   KYFP   SG++L+TGTS+GIGR AAV LA++G+TV A VRK++D  +L+  GV+ + P+++DV K   + +    +      K    L+G+VNNAG+     +E HD+ ++R MFEVN FG++SV+ AFLP++R           ++GR++N+GS++G ++ P   +Y+A+K  +E + D+LR E+ P GVSVS+V+P +  T       +  K    AA  + VSR
Sbjct:    1 MSLCKPGVLMGILAVLLYLLFVFP-VKYFPVHDSGAILITGTSTGIGRHAAVELAKKGYTVYATVRKQADVDSLKKEGVNTLIPIVMDVTKPDQIASAVDTI-----KKGGHKLIGLVNNAGISARVPLEAHDLDRIRSMFEVNVFGVVSVTQAFLPMIRE----------NKGRIVNVGSLAGFIAMPGSASYSATKFGLEGLNDALRREMAPFGVSVSIVEPAYVST------AIASKSTGEAAATRWVSR 231          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|167525509|ref|XP_001747089.1| (hypothetical protein [Monosiga brevicollis MX1] >gi|163774384|gb|EDQ88013.1| predicted protein [Monosiga brevicollis MX1])

HSP 1 Score: 169.088 bits (427), Expect = 1.448e-46
Identity = 96/226 (42.48%), Postives = 140/226 (61.95%), Query Frame = 0
Query:   32 CGTLLLFLLIRQCF-VWK-GRKYFPPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTEL 255
            C ++ + +L    + VW+  R  +     G VL+TG SSGIGR AA+ LA+ G+ V   VRKE DA  +R LG+  +HP+I+DV  +  ++   +  +S LD     PL+ +VNNAG+   A +E +DM ++R+ FEVN FGL+  + AFLPLLR           ++GR+INIGSV+G V       Y+ +K A+E ++DSLR EL P GVSVSLV+P + +TE+
Sbjct:    4 CWSVTVVVLAAALYAVWELPRPTYHVHEQGVVLVTGASSGIGRHAAIELAKLGYEVYGTVRKERDANDIRGLGIKTLHPIIMDVTNSEQIKNAVE-TISKLDQ----PLIALVNNAGISSRAPLEAYDMNRVRNTFEVNIFGLVETTQAFLPLLRA----------NKGRIINIGSVAGLVGMEGSAVYSGTKFALEGISDSLRRELFPLGVSVSLVEPAYVKTEI 214          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|740240756|ref|WP_038081826.1| (short-chain dehydrogenase/reductase [Tolypothrix bouteillei] >gi|744449252|gb|KIE09995.1| short-chain dehydrogenase [Tolypothrix bouteillei VB521301])

HSP 1 Score: 162.925 bits (411), Expect = 1.620e-44
Identity = 86/193 (44.56%), Postives = 126/193 (65.28%), Query Frame = 0
Query:   57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPG 249
            T G+V++TG S+G+GR  A+ L + G+ V AGVRKE DA++L+ +    + P+IIDV ++  +    + V   +  +    L+G+VNNAG+L D  VE+ ++ ++R  FEVN  G I+V+ AFLP +R+           +GR+INIGSVSGKVS P + A  ASK A+EA TD+LR EL+P G+ V LV+PG
Sbjct:    5 TKGAVVITGASTGVGRATALLLDKEGYRVFAGVRKEKDAESLKLVASGNLTPIIIDVTQSEQIRNAAKLVSQTIGNEG---LIGLVNNAGILIDGPVEYIELDELRWQFEVNVIGQIAVTQAFLPAIRKA----------KGRIINIGSVSGKVSSPFFSALCASKFAMEAFTDALRMELNPWGIEVILVEPG 184          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|585103254|gb|EWM22688.1| (short-chain dehydrogenase reductase sdr [Nannochloropsis gaditana])

HSP 1 Score: 162.54 bits (410), Expect = 3.461e-44
Identity = 91/203 (44.83%), Postives = 128/203 (63.05%), Query Frame = 0
Query:   54 PPLTSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELF 256
            PP     ++++G S+GIGR AA YLA+ GFTVLAGVR+E+D + LR   +  +HP+I+DV  AS V A  +      +A    P+ G+VNNAGL     VE  DM + R +FEVN   +I ++ AF+PLLRR PG         GR++N+GS +G ++    G YA+SKHAVE +TDS+R EL    +SVSLV PG  ++ ++
Sbjct:   32 PPGNQAIIVISGASTGIGRHAAEYLARLGFTVLAGVRREADMEDLRSAHLPSLHPIILDVTNASDVRAAVERA----EALAPLPVWGLVNNAGLGYPIPVELADMEKARKLFEVNVLAVIGMAQAFVPLLRRAPG---------GRIVNVGSATGTMATQGDGIYASSKHAVEGLTDSMRLELAAWEMSVSLVVPGQVQSGMW 221          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|504915856|ref|WP_015102958.1| (short-chain dehydrogenase/reductase [Saccharothrix espanaensis] >gi|407885203|emb|CCH32846.1| Short-chain dehydrogenase/reductase [Saccharothrix espanaensis DSM 44229])

HSP 1 Score: 161.384 bits (407), Expect = 5.948e-44
Identity = 96/207 (46.38%), Postives = 129/207 (62.32%), Query Frame = 0
Query:   61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVVREKKEA 267
            V++TG S+G+G +AA  LA+RGF VLAGVR++ DA A+R    +G+ P+I+D+ K+  VEA    V     A     L  +VNNAG+  +A VE   M Q R +FEVN FG I+++ A LP L R           +GR+INI SV GKV+   YGAYA +K A+EAV+DSLR E+ P GV V +V+PG  RTE+  RG+    K A
Sbjct:   11 VVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGVEPIILDITKSEQVEALAARV-----AGDPRALHALVNNAGIQVNAPVEALPMTQWRWVFEVNLFGHIAITQALLPALLR----------SKGRVINISSVGGKVAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMATRGIATANKLA 199          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1027893107|ref|WP_063783654.1| (dehydrogenase [Streptomyces sp. XY152])

HSP 1 Score: 160.229 bits (404), Expect = 2.029e-43
Identity = 96/204 (47.06%), Postives = 128/204 (62.75%), Query Frame = 0
Query:   57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
            T   +++TG S+G+G +AA  LA+RGF VLAGVR++ DA+A+R    +GI PVI+D+ K+  VEA    V     A     L  +VNNAG+  +A VE   M + R +FEVN FG I+V+ A LP L R           +GR+INI SV GK +   YGAYA +K A+EAV+DSLR E+ P GV V +V+PG  RTE+  RGV
Sbjct:    7 TQKLIVVTGASTGMGASAARELARRGFHVLAGVRRDRDAEAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGVQVNAPVEALPMTEWRRVFEVNLFGHIAVTQALLPALLRS----------KGRVINISSVGGKFAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMAARGV 192          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1011071702|ref|WP_062012445.1| (oxidoreductase [Streptomyces sporocinereus])

HSP 1 Score: 160.229 bits (404), Expect = 2.072e-43
Identity = 95/200 (47.50%), Postives = 127/200 (63.50%), Query Frame = 0
Query:   61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
            V++TG S+G+G +AA  LA+RGF VLAGVR++ DA A+R    +GI PVI+D+ K+  VEA    V     A     L  +VNNAG+  +A VE   MA+ R +FEVN FG I+V+ A LP L R           +GR+INI S+ GK +   YGAYA +K A+EAV+DSLR E+ P GV V +V+PG  RTE+  RG+
Sbjct:   11 VVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGIQVNAPVEALPMAEWRRVFEVNLFGHIAVTQALLPALLR----------GKGRVINISSIGGKFAMATYGAYAGTKFALEAVSDSLRREVGPLGVQVVVVEPGGIRTEMAARGI 192          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1027864500|ref|WP_063756561.1| (MULTISPECIES: dehydrogenase [Streptomyces])

HSP 1 Score: 159.458 bits (402), Expect = 4.009e-43
Identity = 96/204 (47.06%), Postives = 127/204 (62.25%), Query Frame = 0
Query:   57 TSGSVLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGV 260
            T   +++TG S+G+G +AA  LA+RGF VLAGVR++ DA A+R    +GI PVI+D+ K+  VEA    V     A     L  +VNNAG+  +A VE   M + R +FEVN FG I+V+ A LP L R           +GR+INI SV GK +   YGAYA +K A+EAV+DSLR E+ P GV V +V+PG  RTE+  RGV
Sbjct:    7 TQKLIVVTGASTGMGASAARELARRGFHVLAGVRRDRDADAIRS---TGIEPVILDITKSEQVEALAARV-----ADDPRALHALVNNAGVQVNAPVEALPMTEWRRVFEVNLFGHIAVTQALLPALLRS----------KGRVINISSVGGKFAMATYGAYAGAKFALEAVSDSLRREVAPLGVQVVVVEPGGVRTEMAARGV 192          
BLAST of EWM25967.1 vs. NCBI_GenBank
Match: gi|1158572595|ref|WP_079100706.1| (dehydrogenase [Streptomyces sp. Root55])

HSP 1 Score: 159.458 bits (402), Expect = 4.805e-43
Identity = 96/201 (47.76%), Postives = 128/201 (63.68%), Query Frame = 0
Query:   61 VLLTGTSSGIGRTAAVYLAQRGFTVLAGVRKESDAQALRDLGVSGIHPVIIDVAKASSVEACRQHVLSLLDAKTVPPLVGVVNNAGLLQDATVEFHDMAQMRHMFEVNYFGLISVSSAFLPLLRRPPGSSSPHPNHQGRLINIGSVSGKVSFPRYGAYAASKHAVEAVTDSLRAELDPAGVSVSLVQPGFCRTELFIRGVV 261
            +++TG S+G+G +AA  LA +GF VLAGVR++ DA A+R    +GI PVI+D+ K+  VEA    V     A+    L  +VNNAG+  +A VE   MAQ R +FEVN FG I+V+ A LP L R           +GR+INI SV GKV+   YGAYA +K A+EAV+DSLR E+ P GV V +V+PG  RTE+  RG+ 
Sbjct:   11 IVVTGASTGMGASAARELAGQGFHVLAGVRRDRDADAIRS---AGIEPVILDITKSDHVEALAARV-----ARDPRALHALVNNAGIQVNAPVESLPMAQWRWVFEVNLFGHIAVTQALLPALLR----------SKGRVINISSVGGKVAMATYGAYAGAKFALEAVSDSLRREVAPLGVHVVVVEPGGVRTEMAARGIT 193          
The following BLAST results are available for this feature:
BLAST of EWM25967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107856|gb|EWM25967.1|0.000e+0100.00short-chain dehydrogenase reductase sdr, partial [... [more]
gi|514686056|ref|XP_004990606.1|7.171e-4939.13oxidoreductase [Salpingoeca rosetta] >gi|326431692... [more]
gi|167525509|ref|XP_001747089.1|1.448e-4642.48hypothetical protein [Monosiga brevicollis MX1] >g... [more]
gi|740240756|ref|WP_038081826.1|1.620e-4444.56short-chain dehydrogenase/reductase [Tolypothrix b... [more]
gi|585103254|gb|EWM22688.1|3.461e-4444.83short-chain dehydrogenase reductase sdr [Nannochlo... [more]
gi|504915856|ref|WP_015102958.1|5.948e-4446.38short-chain dehydrogenase/reductase [Saccharothrix... [more]
gi|1027893107|ref|WP_063783654.1|2.029e-4347.06dehydrogenase [Streptomyces sp. XY152][more]
gi|1011071702|ref|WP_062012445.1|2.072e-4347.50oxidoreductase [Streptomyces sporocinereus][more]
gi|1027864500|ref|WP_063756561.1|4.009e-4347.06MULTISPECIES: dehydrogenase [Streptomyces][more]
gi|1158572595|ref|WP_079100706.1|4.805e-4347.76dehydrogenase [Streptomyces sp. Root55][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4718rna4718Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications