rna4717, rna4717 (mRNA) Nannochloropsis gaditana

Overview
Namerna4717
Unique Namerna4717
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length795
Alignment locationCM002464.1:164175..166049 +

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Properties
Property NameValue
ProductHRDC-like protein
Orig transcript idgnl|cribi|Naga_101162g1.2499.mrna
Orig protein idgnl|cribi|Naga_101162g1.2499
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:164175..166049 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101162g1gene4554Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna4717rna4717-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25968.1cds4705Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna4717 ID=rna4717|Name=rna4717|organism=Nannochloropsis gaditana|type=mRNA|length=795bp
GAGGAAGGGGATCCGTGTTCGAAATGTGGGAAGCCATTGGAGGCTCGTGT
GGCGCGGACAGACACCAATGCAGGCCGAAAGTTCTGGAAGTGCTTCGACT
GCGATGCCGACTTCCGCTGGGACGACGAGGAAGGAGGGGGAAGGGGGGGA
GATTACGGGGAGAGAGCCTCCTTCCCTATCCATCACGAGCTTCCGGTCCA
CAATATTAGCATGCAAGACGCCTCCCAGTGCAACCACCGCATTTTTGGAC
ACCGCTCCTTCCGCCTGGGGCAGGAGAAGGTGGTGGAGGCAGCGCTCTCC
CTGCGCGACGTCTTCGTCCTCATGCCCACAGGGGGAGGAAAGAGCCTCTG
CTACCAGTTGCCTGCCTGCTTGACGCCGGGCATCACGGTTGTCTTCTCGC
CCCTCCTCTCGCTCATTCAAGACCAAGTGGAAGGGCTCCGGGAAAACGGC
GTGGACGCTGCACAGCTGACGTCCCACCAGGATTATGAAACTGAGGGCAG
GGAAATCATGGATCGTCTCTACCATCTCCCCGCCCACGGAAGTCTGAAGC
TTTTGTACATCACCCCGGAGAAATTCGCACGGTCGGACGCCATGGTCAAA
TGCCTGCAGCGGCTGAAGGACCGCGGACTCCTCGCCCGCTTTGTCATCGA
CGAGGCTCACTGCATCTCACAGTGGGGCCATGACTTCCGCCCGGACTATC
TCATGCTCCGCTCCATCCGCGATAAATTTCCCAGCATTCCTATCATGGCT
TTGACTGCTACAGCCAATCAACGCCTGCTCGAGGACGCGACTTGA
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protein sequence of rna4717

>rna4717-protein ID=rna4717-protein|Name=rna4717|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MGDTSDEDELPLSALLPSKRKEASQTSGKKKKKKRRPMSPSDLATLYRIP
KREAPALEEALMAWRDAYSEAENIAMSHRVLNTRQITQLAALCPTTLAEL
EVISGFGSMEGGLESGG
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mRNA from alignment at CM002464.1:164175..166049+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna4717 ID=rna4717|Name=rna4717|organism=Nannochloropsis gaditana|type=mRNA|length=1875bp|location=Sequence derived from alignment at CM002464.1:164175..166049+ (Nannochloropsis gaditana)
atgggggacACAAGCGATGAGGACGAGCTGCCTCTGTCGGCCTTGCTCCC
CtcgaagcggaaggaggcgTCGCAAACGAgcgggaaaaaggtgagCACGG
AGCATGGGGAAGGATCGGTTCGGGGACATGGGGAGGATTGAGTCGGCCAG
GGAGACCGGCGGGGCGGAACTCGGGCTCAGCTGACGATCTTCCCTTTACG
TGCtattttccctcttctagaagaagaaaaaacggcggcccatgtccccc
TCGGACTTGGCCACCTTGTACCGTATTCCCAAACGGGAAGCACCGGCCCT
GGAAGAGGCGTTGATGGCCTGGAGGGACGCGTACTCGGAGGCAGAGAACA
TTGCAATGAGCCACCGGGTTTTGAATACGCGGCAGATCACTCAGTTGGCA
GCTTTGTGTCCCACCACGCTGGCCGAACTGGAAGTCATCTCCGGCTTTGG
GAgtatggagggagggttggagaGTGGAGGGTAGAAGGGATGGATCGAAG
TACGACAGGGTCTTGCTCATTCGTGACAAGTTTTCATTATTGAGTCAAAG
AttgcctcccttgcccggcTTCTCCCTCTACTTCTCACCCGAACTTTTTT
TAAccaccctttttctttccccagTGGATGGGAGGGTGCAGCGTATAGGC
AAGCAAGTCTTGGGGGTCATCGAGAATTTTCTCCGCCAGgtacgaaggga
gggaggaagggagggagggaggaatggaaagcatgcactcaccctccctt
tctttctctttcctctatCTTTCGCCTCCGTCCTACGAAGCGGAACTTGA
CGCCCAAGAACATCGACCTCTCCGTCTTCATCACCGGAGtgcaggcgggg
gaaagcagctgggaaggagggggctggggagggagttTCCATCAGTTCGC
GGCGCCAGAAAATTACCAGGTGTCAGTGCTTGCCAGCCAGTCATCgccga
caagggagggacgggggaaagaggagggaaagaaggtaGGAATTCGGGGA
AGAGAAGTAAGTGCGCATCGAAATGTTGGCACGGCAGCTGCTGGACGGCA
GGATTGGGTAGTTgagggaagtggtggagcagcaggaggggtTGGGACAG
GCACTGGCGCAAACATGGGCCGCGGCCCCTTTACGTACGATGTTGACGAC
GTGGATACTGCTCTCTTGCTGGCAGCAGCcgaagaggcggagagggggat
ggagggaagggccccGCCTATGAAGGATGCAGGACACGGAGCTTTCTCGT
CCGATGTACCGGCGAGGGAGATTTGGGAGCAGGCATCGACCCGGCGActc
ctgggagaggaggaagccggtgGTGCGGTGGACGAAGATTTTTACACTGT
AGGGTAGGGCGGGGCGTCGGCATGGAAGACACAAGGGGCAAAGGACAGGG
TGGCCGTGGTTGTGGGTGGGGTGCCTCGCTGTCAGATTGTGCATTCGAGA
TGGCACGGAAATGGGATCGAAACGGAATCACGCGTCGGGAGAGGTGGGAG
AATGACATGTACATATGGAAACTGTGCTCGCTCCCAAGCAGAAAAAAAGC
AGGGGTTGAAATTGGTGCCGTTGCTCGGAAAGCGACTCCCGTTGCTTCAT
CCCCGGAAAAGTTATTGTTACTCAATCGTACTCTCACTCCTGCGTGCGCG
GGTTCCGCTTGCCTGCGCCCTTTTTGGTCCTaggaagagcaaggcaatgg
agggaggagaccgaaGAGGAGCCACACCAGGTGTAGATTTTGAGAAATTG
CAACAAAGTATGGCTAAACGGAAATTAGAAGGCCACGCTGCTGGCAACGC
CATGCTCCTTGCCACATAAAAAGCGACTAGCCACAAAGGCGAACTTGTCC
AAAAGTAGTATGTTACGCAGAATCA
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Coding sequence (CDS) from alignment at CM002464.1:164175..166049+

>rna4717 ID=rna4717|Name=rna4717|organism=Nannochloropsis gaditana|type=CDS|length=708bp|location=Sequence derived from alignment at CM002464.1:164175..166049+ (Nannochloropsis gaditana)
atgggggacACAAGCGATGAGGACGAGCTGCCTCTGTCGGCCTTGCTCCC
CtcgaagcggaaggaggcgTCGCAAACGAgcgggaaaaagaagaagaaaa
aacggcggcccatgtcccccTCGGACTTGGCCACCTTGTACCGTATTCCC
AAACGGGAAGCACCGGCCCTGGAAGAGGCGTTGATGGCCTGGAGGGACGC
GTACTCGGAGGCAGAGAACATTGCAATGAGCCACCGGGTTTTGAATACGC
GGCAGATCACTCAGTTGGCAGCTTTGTGTCCCACCACGCTGGCCGAACTG
GAAGTCATCTCCGGCTTTGGGAgtatggagggagggttggagaGTGGAGG
GTAGatgggggacACAAGCGATGAGGACGAGCTGCCTCTGTCGGCCTTGC
TCCCCtcgaagcggaaggaggcgTCGCAAACGAgcgggaaaaagaagaag
aaaaaacggcggcccatgtcccccTCGGACTTGGCCACCTTGTACCGTAT
TCCCAAACGGGAAGCACCGGCCCTGGAAGAGGCGTTGATGGCCTGGAGGG
ACGCGTACTCGGAGGCAGAGAACATTGCAATGAGCCACCGGGTTTTGAAT
ACGCGGCAGATCACTCAGTTGGCAGCTTTGTGTCCCACCACGCTGGCCGA
ACTGGAAGTCATCTCCGGCTTTGGGAgtatggagggagggttggagaGTG
GAGGGTAG
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Synonyms
Publications