EWM25968.1, cds4705 (CDS) Nannochloropsis gaditana

Overview
NameEWM25968.1
Unique Namecds4705
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:164175..164264 +
Alignment locationCM002464.1:164395..164658 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25968.1
ProductHRDC-like protein
Orig transcript idgnl|cribi|Naga_101162g1.2499.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:164175..164264 +
CM002464.1supercontigCM002464.1:164395..164658 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
GO:0044237cellular metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0003824catalytic activity
GO:0003676nucleic acid binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR010997HRDC-like
IPR002121HRDC_dom
Homology
[Close]
BLAST of EWM25968.1 vs. NCBI_GenBank
Match: gi|585107858|gb|EWM25968.1| (HRDC-like protein [Nannochloropsis gaditana])

HSP 1 Score: 237.269 bits (604), Expect = 4.027e-79
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 
Query:    1 MGDTSDEDELPLSALLPSKRKEASQTSGKKKKKKRRPMSPSDLATLYRIPKREAPALEEALMAWRDAYSEAENIAMSHRVLNTRQITQLAALCPTTLAELEVISGFGSMEGGLESGG 117
            MGDTSDEDELPLSALLPSKRKEASQTSGKKKKKKRRPMSPSDLATLYRIPKREAPALEEALMAWRDAYSEAENIAMSHRVLNTRQITQLAALCPTTLAELEVISGFGSMEGGLESGG
Sbjct:    1 MGDTSDEDELPLSALLPSKRKEASQTSGKKKKKKRRPMSPSDLATLYRIPKREAPALEEALMAWRDAYSEAENIAMSHRVLNTRQITQLAALCPTTLAELEVISGFGSMEGGLESGG 117
The following BLAST results are available for this feature:
BLAST of EWM25968.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585107858|gb|EWM25968.1|4.027e-79100.00HRDC-like protein [Nannochloropsis gaditana][more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4717rna4717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications