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Properties
| Property Name | Value |
|---|
| Product | r- vamp71-family |
| Orig transcript id | gnl|cribi|Naga_100774g2.10600.mrna |
| Orig protein id | gnl|cribi|Naga_100774g2.10600 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002464.1 | supercontig | CM002464.1:155501..157400 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna4715 ID=rna4715|Name=rna4715|organism=Nannochloropsis gaditana|type=mRNA|length=2472bp
ATGAATTTTCGCCGGCCTGGTGGACAGGCTTATCGCCCCACGTCCTCGAA
CAGGAATGCAGGGAACCCCTTTGCCAGCAAAAACGATCCATCTGGTTCAA
ATGCCGGCGCAGGCTCCACCGTCAGAGCGTCTCAGCAGTCTCAGAGTGTG
AAAGATTGGTTCGATGACGAGGATGAAGAGGGCGATGGACGCGGAAAGAG
ACGTGGAGCACCTTCGGGCTTAGGCATTGGGGGGGAGGAGGAAGAAGACC
CAATAGATGCATTTATCAAAGAACAGCAGGGCTCGTGTCACCAAGGCAAA
AATGGCGCTCTGAATGATAGTTCAAAAGCTGTCAGTTCGACGCCGGGTCC
GGAGAAGGAGGAAGACGTAGATCCCCTGGACGCTTTCATGGTGGGTGTGC
AGAGTAAAGTGGAAGAGGAAGCCCGTCACACCACGGAGGCTGGGGTGGAA
AAACCTGTGTTCCTCGACGAGACCGCAGCAGAGGAAGAAGAAGGCGTGAG
AGAGGAAGAGGAGTACTCGGAGGAAGGAGACGGGGGGTATATCAGCCGTC
GGCGACCAGGGGAGGACGATGCGGACTATGACTCGGATGCCGAAGTGTAC
GCTGCTGGGGCGGCAGCAGAGGCAGCAGTTGCGGGCAAAGGAGGAGACGA
TAGGGCTCTTGGCCTGGTGCCTGGGAAGATGTACAGCCGGGTGGGGCCGG
AAGGGAAGAAGGCGATGGAGAGCTTGCCCCCTCTGGACCACGCCAGCATG
TCCTACCCGCCGTTTCGAAAATGTTTCTACACGGAGGACCCGGAGGTGAC
GGCGATGGATTGGGAAGAGATGTTAAGGTACCGGGAAGAGGAATTGCAGG
TGCAGGTGGAAGGGCGGGAAAGCTGCCGTCCCATCGTGTCCTTCAAGCAC
GCCACGGGCTTTTCCGAGACATTATTGCGCGAAATCATCAAGCGGGGTTT
TCAAGCCCCCACCCCCATCCAAGCGCAAGCCCTGCCCCTCGCTTTGGCCG
GTCGCGACGTGCTGGGGATCGCGCAGACGGGGAGCGGGAAGACCTTGGCC
TTCGTGTGGCCGGCCCTGGTGCATCTTATGGACCAACCGGAGGTGGTCAA
AGGGGAAGGGCCCATCGTCTTGATCCTCGCACCTACCAGGGAACTGGCAT
CGCAGATTTATGTGGAGGCTCTCAAATTTGCCAAGCCGCACGGGGCGAGA
GTGGCGGCCGTCTTTGGCGGGGCAGGGAAATGGGAGCAGAGCAAATTGTT
GAAGGCAGGTGTGGAGATCTTGATCGCCACCCCGGGGCGCCTGCTCGAAC
ATTTGAAGGGGAAAGCCACGAATTTGTTCCGGTGCACTTTCTTGGTCCTG
GACGAAGCGGATCGTATGTTTGACTTGGGCTTCGAATCTCAGATTCATTC
CGTCCTCGGACAGATTCGACCGGACCGGCAAAGCCTTATGTTCTCCGCCA
CTTTCAAACGGAAAGTGGAGAATTTGGCGCGAAAAGTGCTGCGCGATCCG
ATCCGCATCGTCTGTGGCCGGGCAGGGCAGGCCAACGAGGACGTGAGGCA
GGAAGTGGTGGTGGTGCCGAGGGAGGAAGGGAAGGAGGAATGGTTGTTCC
AGAAATTTTCGAGCCTGGTGGAGGCAGGAAAGGTGCTGGTCTTTGTGTCG
AGCAAACAAGGGTGCGAAGACGTGGCCGGGCGCTTGCGAACGATGTTGAT
GAGGAGGGAAGGAAGTAGCGCGGGAGGGTGGGAGGTAGAGACTTTGCATG
GAGACAAGGACCAGAGCGAACGGTCCCTGATCATGCGCCGGTTCAAGCGC
CAGGAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGG
GCGGTGTCGGGTGCTGGTGGCGACGGACGTGGCGTCGCGGGGCTTAGACA
TTAAAGACGTCCGGAACGTGGTCAATTACGACATGGCCCGGTCCATGGAA
GCGCACGTGCATCGATGTGGGCGGACAGGGCGGATGAGCGTGGAAGGAGG
GAGGGAGGGAGGGACGGCCTACACATTGTTGACTCCGAAGGACGCGGGTA
TGGCGGGGGAACTGGTGAAGGGCCTGGAAGGGGCGCGACAGGAGGTTCCG
GACGCCTTGAGGGCGATGGTACGGGGGGGAGGGAGGGGAGGAGGACATGG
GGGAGGGAGAGGGGGAGGACAGGGGGGAGGGAGGGGGGGAGGGAGAGGGG
GAGGGCGGTCTGGGAGCCGGGAAGATTTCCGATTTGCAAAGCCGCCGGCC
TCGTACAAGGTGACGGCTGGGATAGGTTTTGGAGGAGGAGGAGGAGGGGA
AGGAGGTGGAGGAGGTGGAGGGGGAGGAGGAGGAGGAGGGAGGGGAAGAG
GGGCCATGATGTCCTCGTTTGTGAGACAGCAGGAGGATTTTCGGACGGTG
AGAGGAGATGGTGGCGGGGAGGGAGAAGGACGGGAGGAGGGAGGAGGGGG
GGGGGGGAGGAGGAGGGAGGGA back to topprotein sequence of rna4715 >rna4715-protein ID=rna4715-protein|Name=rna4715|organism=Nannochloropsis gaditana|type=polypeptide|length=271bp
MTSGCTPEKRGSSGARDQEYRDLPPGSLCCPARFEGKFTLHLQQNRATTM
TILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAH
VFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTA
IAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVL
ERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIV
ALILLISASACGFDFHGCGKR back to topmRNA from alignment at CM002464.1:155501..157400- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna4715 ID=rna4715|Name=rna4715|organism=Nannochloropsis gaditana|type=mRNA|length=1900bp|location=Sequence derived from alignment at CM002464.1:155501..157400- (Nannochloropsis gaditana)
ATGGTGAGGAGCGAGAGCGAGAAAATAAGGAGGAAGGAGACGCAGCCGTG
AAGGTACCTGTTCTAGCCGCTTGATCGTTTTTTCATAGTCCGTCTTCATG
TTCGATCCCTACCGCTGGAAGGAATCACAGCTGTGAGGCCTCACAGGAGG
CCACCACTTTTCGCTGTACGGCGGTGGATAGCTTTGTTGTTCCTAGATAA
ATAGAGTGAGAGCGTGGCGGATGAGTACTAGCAGTGCAGAGGATGACCCA
AGGAAATTTTTTTGAAACTTTACTTTCCACAATGCCTGCAAGAATTATGC
AGTCGCCATTGAATACAAATTTGCCTTTGCCTCCAGGCTTAAGCGCGTGC
GTGTGTCATTTTTTTGTCATAATGGGAGTTATCCTCCCTCCTCTCCCTCC
TCCCTTGTAAAGAGGGGCCAAAACACATTCCCCCGCAACAAAGGAATTGA
AAGCTCATGCAAATGGAGACAAGAAGGCATCCGACATGGTCTGAATAAAA
AGAAAGTGGAAGTTTCTACCCGAATCAGGTCACGTTCGAAGCCCGCCTCG
ATACCAGCATTGTGCTGGAAGCCAAGGGAAGGAACAAAATCAAACGACGG
CTTTCCCTCCTCTTTGCCGTATACCGCCTCTACCTGACAATAAAGGCAGC
ACTCCGCCCTCCTTGTGCCTCCATCGACCACATTTCCTCAACTTCTTCTG
AAAGCTCAAACATTTTACTTTTGCGGACCTTTTGGTATCCTGTCCCACGT
TCATGTCTCGTGTAGTCATGCCAACACTTTGAGGGTGGTCATGACCCTCC
CCCGCCCGACCTGAGAATCAGTACAACCCATTACTATTGAAAAAGGACCA
TCTGGGAACGAACTCACAACATCTATCACACGCAAATGGACTCAGGGCAA
AAAAGGGTAGACAAGCGGCTGTACACCTGAAAAACGAGGATCTAGTGGCG
CTCGTGACCAAGAGTATCGTGATCTCCCTCCCGGGTCTCTTTGCTGCCCT
GCACGGTTTGAAGGCAAGTTCACATTGCACCTACAACAAAACCGAGCCAC
GACGATGACAATCGTAAGTGTCCGTCATACGTATCTTGTACAAATATCTC
GCATGAAGATTTTTACTGCGTAAGTCGGACCCTCGTTTTTCTTCACAATA
CTCTGGGTTGCCGTTTTGGCACCTCCCCACGATCGTGTCCGTCCACCACT
CACCGCCCACACATCCCGTCCCTATCCTTTTCTCTTGCAGCTCTATGCCC
TGATTGCCCGTGGAAAGGATGTCCTATGCGAGTATACGGCCGTCTCGGGA
AATTTCCCCACGGTAACCCGCCTTCTTCTAGGGAAGATCCCGCGGGGGGA
GGACGGAAAACGCAGCTACGTCTATGATGCGCATGTCTTCCATTACATCG
TCGCAGACCGACTAACCTATCTGTGTATGACCGATGACCCGCAGCAAAAG
CGTTTTCGGGCTCCGTTTGCGTACTTGAATGACATCAAGGACCGTTTCCT
GACCCGATACGGGCGTGAAAGCGCGCACACGGCCATTGCCTTTGCCATGA
ACGAAGAATTTTCCGGGATATTAAAGAGGCAAATGGATTACTTCAACAGT
CCCGATGCGGCGGCCTCGAGCGCCCTGCAAGCGAAACTGGACGACGTGCG
GAACGTCATGATCCAAAATGTGGACCTGGTCTTGGAGAGGGGCGAAAAAT
TAGAGCTTTTGGTGGACAAAACCGCCGACTTGCAGCACAGTGCCTTCAAA
TTCGAACGATCCTCCCGGCAACTCCGGCATGAGATGCTGTGGCGAAGGAT
CCGCTGTTACTTGCTCATAACTGGATTGATTGTCGCACTGATCTTATTGA
TCTCAGCCTCCGCGTGTGGCTTTGATTTTCACGGGTGTGGAAAGAGATAG
back to topCoding sequence (CDS) from alignment at CM002464.1:155501..157400- >rna4715 ID=rna4715|Name=rna4715|organism=Nannochloropsis gaditana|type=CDS|length=2448bp|location=Sequence derived from alignment at CM002464.1:155501..157400- (Nannochloropsis gaditana)
CTCTATGCCCTGATTGCCCGTGGAAAGGATGTCCTATGCGAGTATACGGC
CGTCTCGGGAAATTTCCCCACGGTAACCCGCCTTCTTCTAGGGAAGATCC
CGCGGGGGGAGGACGGAAAACGCAGCTACGTCTATGATGCGCATGTCTTC
CATTACATCGTCGCAGACCGACTAACCTATCTGTGTATGACCGATGACCC
GCAGCAAAAGCGTTTTCGGGCTCCGTTTGCGTACTTGAATGACATCAAGG
ACCGTTTCCTGACCCGATACGGGCGTGAAAGCGCGCACACGGCCATTGCC
TTTGCCATGAACGAAGAATTTTCCGGGATATTAAAGAGGCAAATGGATTA
CTTCAACAGTCCCGATGCGGCGGCCTCGAGCGCCCTGCAAGCGAAACTGG
ACGACGTGCGGAACGTCATGATCCAAAATGTGGACCTGGTCTTGGAGAGG
GGCGAAAAATTAGAGCTTTTGGTGGACAAAACCGCCGACTTGCAGCACAG
TGCCTTCAAATTCGAACGATCCTCCCGGCAACTCCGGCATGAGATGCTGT
GGCGAAGGATCCGCTGTTACTTGCTCATAACTGGATTGATTGTCGCACTG
ATCTTATTGATCTCAGCCTCCGCGTGTGGCTTTGATTTTCACGGGTGTGG
AAAGAGATAGACAAGCGGCTGTACACCTGAAAAACGAGGATCTAGTGGCG
CTCGTGACCAAGAGTATCGTGATCTCCCTCCCGGGTCTCTTTGCTGCCCT
GCACGGTTTGAAGGCAAGTTCACATTGCACCTACAACAAAACCGAGCCAC
GACGATGACAATCATGCTCTATGCCCTGATTGCCCGTGGAAAGGATGTCC
TATGCGAGTATACGGCCGTCTCGGGAAATTTCCCCACGGTAACCCGCCTT
CTTCTAGGGAAGATCCCGCGGGGGGAGGACGGAAAACGCAGCTACGTCTA
TGATGCGCATGTCTTCCATTACATCGTCGCAGACCGACTAACCTATCTGT
GTATGACCGATGACCCGCAGCAAAAGCGTTTTCGGGCTCCGTTTGCGTAC
TTGAATGACATCAAGGACCGTTTCCTGACCCGATACGGGCGTGAAAGCGC
GCACACGGCCATTGCCTTTGCCATGAACGAAGAATTTTCCGGGATATTAA
AGAGGCAAATGGATTACTTCAACAGTCCCGATGCGGCGGCCTCGAGCGCC
CTGCAAGCGAAACTGGACGACGTGCGGAACGTCATGATCCAAAATGTGGA
CCTGGTCTTGGAGAGGGGCGAAAAATTAGAGCTTTTGGTGGACAAAACCG
CCGACTTGCAGCACAGTGCCTTCAAATTCGAACGATCCTCCCGGCAACTC
CGGCATGAGATGCTGTGGCGAAGGATCCGCTGTTACTTGCTCATAACTGG
ATTGATTGTCGCACTGATCTTATTGATCTCAGCCTCCGCGTGTGGCTTTG
ATTTTCACGGGTGTGGAAAGAGATAGACAAGCGGCTGTACACCTGAAAAA
CGAGGATCTAGTGGCGCTCGTGACCAAGAGTATCGTGATCTCCCTCCCGG
GTCTCTTTGCTGCCCTGCACGGTTTGAAGGCAAGTTCACATTGCACCTAC
AACAAAACCGAGCCACGACGATGACAATCATGCTCTATGCCCTGATTGCC
CGTGGAAAGGATGTCCTATGCGAGTATACGGCCGTCTCGGGAAATTTCCC
CACGGTAACCCGCCTTCTTCTAGGGAAGATCCCGCGGGGGGAGGACGGAA
AACGCAGCTACGTCTATGATGCGCATGTCTTCCATTACATCGTCGCAGAC
CGACTAACCTATCTGTGTATGACCGATGACCCGCAGCAAAAGCGTTTTCG
GGCTCCGTTTGCGTACTTGAATGACATCAAGGACCGTTTCCTGACCCGAT
ACGGGCGTGAAAGCGCGCACACGGCCATTGCCTTTGCCATGAACGAAGAA
TTTTCCGGGATATTAAAGAGGCAAATGGATTACTTCAACAGTCCCGATGC
GGCGGCCTCGAGCGCCCTGCAAGCGAAACTGGACGACGTGCGGAACGTCA
TGATCCAAAATGTGGACCTGGTCTTGGAGAGGGGCGAAAAATTAGAGCTT
TTGGTGGACAAAACCGCCGACTTGCAGCACAGTGCCTTCAAATTCGAACG
ATCCTCCCGGCAACTCCGGCATGAGATGCTGTGGCGAAGGATCCGCTGTT
ACTTGCTCATAACTGGATTGATTGTCGCACTGATCTTATTGATCTCAGCC
TCCGCGTGTGGCTTTGATTTTCACGGGTGTGGAAAGAGATAGACAAGCGG
CTGTACACCTGAAAAACGAGGATCTAGTGGCGCTCGTGACCAAGAGTATC
GTGATCTCCCTCCCGGGTCTCTTTGCTGCCCTGCACGGTTTGAAGGCAAG
TTCACATTGCACCTACAACAAAACCGAGCCACGACGATGACAATCATG back to top
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