EWM25971.1, cds4703 (CDS) Nannochloropsis gaditana

Overview
NameEWM25971.1
Unique Namecds4703
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:157398..157400 -
Alignment locationCM002464.1:156338..156490 -
Alignment locationCM002464.1:155501..156160 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25971.1
Productr- vamp71-family
Orig transcript idgnl|cribi|Naga_100774g2.10600.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:157398..157400 -
CM002464.1supercontigCM002464.1:156338..156490 -
CM002464.1supercontigCM002464.1:155501..156160 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0016192vesicle-mediated transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR011012Longin-like_dom
IPR010908Longin_dom
IPR001388Synaptobrevin
Homology
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|585107865|gb|EWM25971.1| (r- vamp71-family [Nannochloropsis gaditana])

HSP 1 Score: 564.303 bits (1453), Expect = 0.000e+0
Identity = 271/271 (100.00%), Postives = 271/271 (100.00%), Query Frame = 0
Query:    1 MTSGCTPEKRGSSGARDQEYRDLPPGSLCCPARFEGKFTLHLQQNRATTMTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGKR 271
            MTSGCTPEKRGSSGARDQEYRDLPPGSLCCPARFEGKFTLHLQQNRATTMTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGKR
Sbjct:    1 MTSGCTPEKRGSSGARDQEYRDLPPGSLCCPARFEGKFTLHLQQNRATTMTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGKR 271          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|676393301|ref|XP_009039928.1| (hypothetical protein AURANDRAFT_70318 [Aureococcus anophagefferens] >gi|323449389|gb|EGB05277.1| hypothetical protein AURANDRAFT_70318 [Aureococcus anophagefferens])

HSP 1 Score: 263.848 bits (673), Expect = 1.607e-85
Identity = 125/221 (56.56%), Postives = 163/221 (73.76%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSP--DAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC 268
            MTILYAL+ARGK VL E+T  SGNFPT+TRLLLG+I     GK SY+YD +VFHY+  + L YLCM DDP  ++ R PFA+L D+K RFL  YG + A TAIAFAMN EFS +L++QM+ FN P  D    +A+  KLDDV+NVM+QN+++VLERGEKLELLVDKT  L  +AF FE+SSR+L+  M W++++ Y+L  GL+  ++ +I+  ACG DF  C
Sbjct:    1 MTILYALVARGKTVLSEFTFTSGNFPTITRLLLGRIDMARSGKMSYIYDQYVFHYVCEEGLLYLCMCDDPDSQKRRVPFAFLEDVKRRFLAAYG-DVAQTAIAFAMNLEFSRVLQQQMELFNGPMGDRQQFNAVHQKLDDVKNVMVQNIEMVLERGEKLELLVDKTDRLNTTAFTFEKSSRKLKEAMFWKKVKLYMLAIGLLGFVVFIITWVACGADFGKC 220          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|676379781|ref|XP_009033169.1| (hypothetical protein AURANDRAFT_36201 [Aureococcus anophagefferens] >gi|323456208|gb|EGB12075.1| hypothetical protein AURANDRAFT_36201 [Aureococcus anophagefferens])

HSP 1 Score: 256.529 bits (654), Expect = 1.204e-82
Identity = 114/222 (51.35%), Postives = 165/222 (74.32%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNSPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGCGKR 271
            MTILYAL+ARG  VL EYT  SGNFPT+TR+LLGKIP  +DGK SYVYD +VFHY+V +++T+LCM D+  ++R   PFA+L+D+K+RF   YG +    AIAFA NE+F   +++Q++++N P A   + +  KLDDV+NVM+QN+++VLERGEKLELLVDK+  LQ  +F+F++SS++LR  M W++++ Y+LI  +++ L+ +  A  CG  F  CG +
Sbjct:    1 MTILYALVARGNTVLAEYTFTSGNFPTITRVLLGKIPE-QDGKMSYVYDQYVFHYVVENKMTFLCMADESFKRR--VPFAFLDDVKNRFFATYG-DKGQAAIAFAYNEDFGRTIQKQLEFYNGPQADQFATVHKKLDDVKNVMVQNIEMVLERGEKLELLVDKSEQLQLDSFRFQKSSKKLRQAMFWKKVKIYMLIACVVLVLLYIFLAVLCGPTFEKCGNK 218          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|1173957945|gb|OQS04380.1| (vesicle-associated membrane protein [Thraustotheca clavata])

HSP 1 Score: 245.358 bits (625), Expect = 3.391e-78
Identity = 121/220 (55.00%), Postives = 155/220 (70.45%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC 268
            M I+YAL+ARGK VL EYTA SGNFPTVTR+LL KIP  ED K SYVYD HVFHYIV D +TYLCM D+  ++R   PF +L D+K+RFLT YG +   TAIAFAMN EF  +++RQMDYFN+ P+      +Q  LD+V++ M++N++ VL RGEK ELLVD+T  L   +F F R SR+LR  M WR ++ +L +  L V +I  + + ACGFDF  C
Sbjct:    1 MAIVYALVARGKIVLAEYTASSGNFPTVTRVLLAKIPL-EDSKMSYVYDMHVFHYIVKDGITYLCMADNDFKRR--VPFQFLEDMKNRFLTTYG-DRGRTAIAFAMNAEFQHVIQRQMDYFNANPEVDTVIQVQQSLDEVKDTMVENIEKVLGRGEKFELLVDRTDQLNQQSFVFNRKSRKLRKAMWWRSMKMWLCLGCLAVLIIYFVISMACGFDFSSC 216          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|669151914|ref|XP_008611519.1| (hypothetical protein SDRG_07463 [Saprolegnia diclina VS20] >gi|530736993|gb|EQC35235.1| hypothetical protein SDRG_07463 [Saprolegnia diclina VS20])

HSP 1 Score: 243.432 bits (620), Expect = 1.665e-77
Identity = 121/220 (55.00%), Postives = 156/220 (70.91%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC 268
            M I+YALIARGK VL EYTA SGNFPTVTR+LL KIP  +D K SYVYD HVFHY+V D +TYLCM D+  ++R   PF +L+D+K RFLT YG +   TAIAFAMN EF  +++RQMDYFN+ PD      +Q  LDDV++ M++N++ VL RGEK ELLVD+T  L   +F F R SR+LR  M WR ++ ++ +  L + +I L+ + ACGFDF  C
Sbjct:    1 MPIVYALIARGKTVLAEYTASSGNFPTVTRVLLAKIP-VDDSKMSYVYDKHVFHYVVKDGITYLCMADNDFKRR--VPFQFLDDLKARFLTTYG-DRGRTAIAFAMNAEFQHVIQRQMDYFNANPDVDTVVQVQQTLDDVKDTMVENIEKVLGRGEKFELLVDRTDQLSQQSFVFNRKSRKLRKVMWWRSMKMWVCLGCLGLLVIYLVISMACGFDFSSC 216          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|813206241|ref|XP_012210118.1| (hypothetical protein SPRG_14796 [Saprolegnia parasitica CBS 223.65] >gi|641524627|gb|KDO19185.1| hypothetical protein SPRG_14796 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 241.506 bits (615), Expect = 8.925e-77
Identity = 120/220 (54.55%), Postives = 156/220 (70.91%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC 268
            M I+YALIARGK VL EYTA SGNFPTVTR+LL KIP  +D K SYVYD HVFHY+V D +TYLCM D+  ++R   PF +L+D+K RFLT YG +   TAIAFAMN EF  +++RQMDYFN+ P+      +Q  LDDV++ M++N++ VL RGEK ELLVD+T  L   +F F R SR+LR  M WR ++ ++ +  L + +I L+ + ACGFDF  C
Sbjct:    1 MPIVYALIARGKTVLAEYTASSGNFPTVTRVLLAKIPL-DDSKMSYVYDKHVFHYVVKDGITYLCMADNDFKRR--VPFQFLDDLKARFLTTYG-DRGRTAIAFAMNAEFQHVIQRQMDYFNANPEVDTVVQVQQTLDDVKDTMVENIEKVLGRGEKFELLVDRTDQLSQQSFVFNRKSRKLRKVMWWRSMKMWVCLGCLGLLVIYLVISMACGFDFSSC 216          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|299116962|emb|CBN75066.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 239.965 bits (611), Expect = 3.227e-76
Identity = 121/214 (56.54%), Postives = 156/214 (72.90%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACG 262
            MTI+YALIARGK VL E+TA +GNFPTVTR+LL KIP  E  + SYV+DAHVFHYIV + +TYLCM D  +Q R R PFA+L DIK +F  +YG  S HTA AF+MN EF+ IL+RQMD FNS P   +   ++++++DVR  M++NVD VLERGEK+ELLVDKT  L   AF+F+R+SR LR  M WR+++  +   G+ V L+    A+ACG
Sbjct:    1 MTIVYALIARGKAVLAEFTATAGNFPTVTRVLLNKIPT-EATRMSYVWDAHVFHYIVENGVTYLCMAD--EQSRRRVPFAFLEDIKTKFGAQYG-ASIHTAPAFSMNAEFAPILQRQMDAFNSNPPGDSLQGVRSQIEDVRAGMLENVDKVLERGEKIELLVDKTDQLNQQAFRFDRASRSLRRTMYWRKVKTGVAAAGVAVILMFAAGATACG 210          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|1214700589|gb|OWZ13143.1| (Vesicle-associated membrane protein [Phytophthora megakarya])

HSP 1 Score: 238.039 bits (606), Expect = 2.152e-75
Identity = 120/224 (53.57%), Postives = 163/224 (72.77%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC-GKR 271
            M I+YAL++R K VL EYTA SGNFPTVTR+LL KIP   DG+ SYVYD H+FHYIV   +TYLCM DD  ++R   PF +L D+K+RF   YG E A TAIAFAMN++F   ++R +DY+N+ PDA + S ++ ++DDV+++M++N++ VL+RGEK ELLVD+T  L   + KFERSS QLR  M  R ++ +LL+  + + +I L+ + ACGFDF GC GKR
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIPTN-DGRMSYVYDRHIFHYIVEGGITYLCMADDDLKRR--VPFLFLEDMKNRFQAAYG-ERALTAIAFAMNDQFQHEIRRLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSMWRRNVKLWLLLVFVGLFVIYLVISMACGFDFSGCSGKR 220          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|698804758|ref|XP_009835408.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574109402|gb|ETV74905.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 238.039 bits (606), Expect = 2.348e-75
Identity = 112/220 (50.91%), Postives = 155/220 (70.45%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFN-SPDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC 268
            M I+YAL++RGK VL E+TA SGNFPTVTR+LL KIP  ED K SYVYD H+FHY+V D +TYLCM D+  ++R   PF +L D+K+RFL  YG E   TAIAFAMN EF  +++RQM+Y+N SPD    + +Q  LDDV++ M++N++ VL+RGEK ELLVD+T  L   +F F R +++LR  + WR ++ ++ +  L + ++  + A ACGFD   C
Sbjct:    1 MPIVYALVSRGKTVLAEFTASSGNFPTVTRVLLAKIP-TEDSKMSYVYDQHIFHYVVQDGITYLCMADNDFKRR--VPFQFLEDLKNRFLATYG-ERGQTAIAFAMNAEFQHVIQRQMEYYNASPDVDTVARVQQSLDDVKDAMVENIEKVLDRGEKFELLVDRTDKLSQQSFVFNRKAKKLRKTLWWRSVKMWVCLGVLGIGILYFVIAMACGFDLSAC 216          
BLAST of EWM25971.1 vs. NCBI_GenBank
Match: gi|675162313|ref|XP_008890041.1| (hypothetical protein PPTG_00403 [Phytophthora parasitica INRA-310] >gi|567971916|gb|ETK96912.1| hypothetical protein L915_00462 [Phytophthora parasitica] >gi|568000236|gb|ETL50257.1| hypothetical protein L916_00466 [Phytophthora parasitica] >gi|568029396|gb|ETM03322.1| hypothetical protein L917_00437 [Phytophthora parasitica] >gi|568060037|gb|ETM56583.1| hypothetical protein L914_00461 [Phytophthora parasitica] >gi|568109306|gb|ETN23913.1| hypothetical protein PPTG_00403 [Phytophthora parasitica INRA-310] >gi|570337942|gb|ETO85890.1| hypothetical protein F444_00486 [Phytophthora parasitica P1976] >gi|570961985|gb|ETP26964.1| hypothetical protein F441_00489 [Phytophthora parasitica CJ01A1] >gi|570998803|gb|ETP54934.1| hypothetical protein F442_00479 [Phytophthora parasitica P10297] >gi|970648687|gb|KUF88158.1| Vesicle-associated membrane protein 7B [Phytophthora nicotianae])

HSP 1 Score: 237.269 bits (604), Expect = 3.592e-75
Identity = 120/224 (53.57%), Postives = 163/224 (72.77%), Query Frame = 0
Query:   50 MTILYALIARGKDVLCEYTAVSGNFPTVTRLLLGKIPRGEDGKRSYVYDAHVFHYIVADRLTYLCMTDDPQQKRFRAPFAYLNDIKDRFLTRYGRESAHTAIAFAMNEEFSGILKRQMDYFNS-PDAAASSALQAKLDDVRNVMIQNVDLVLERGEKLELLVDKTADLQHSAFKFERSSRQLRHEMLWRRIRCYLLITGLIVALILLISASACGFDFHGC-GKR 271
            M I+YAL++R K VL EYTA SGNFPTVTR+LL KIP   DG+ SYVYD H+FHYIV   +TYLCM DD  ++R   PF +L D+K+RF   YG E A TAIAFAMN++F   ++R +DY+N+ PDA + S ++ ++DDV+++M++N++ VL+RGEK ELLVD+T  L   + KFERSS QLR  M  R ++ +LL+  + + +I L+ + ACGFDF GC GKR
Sbjct:    1 MPIVYALVSREKTVLAEYTATSGNFPTVTRVLLAKIP-PTDGRMSYVYDRHIFHYIVEGGVTYLCMADDDLKRR--VPFLFLEDMKNRFQAAYG-ERALTAIAFAMNDQFQHEIRRLLDYYNANPDADSLSRVKQQIDDVKDIMVENIEKVLDRGEKFELLVDRTDKLNRQSVKFERSSTQLRKSMWRRNVKLWLLLVTVGLFVIYLVISMACGFDFSGCSGKR 220          
The following BLAST results are available for this feature:
BLAST of EWM25971.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107865|gb|EWM25971.1|0.000e+0100.00r- vamp71-family [Nannochloropsis gaditana][more]
gi|676393301|ref|XP_009039928.1|1.607e-8556.56hypothetical protein AURANDRAFT_70318 [Aureococcus... [more]
gi|676379781|ref|XP_009033169.1|1.204e-8251.35hypothetical protein AURANDRAFT_36201 [Aureococcus... [more]
gi|1173957945|gb|OQS04380.1|3.391e-7855.00vesicle-associated membrane protein [Thraustotheca... [more]
gi|669151914|ref|XP_008611519.1|1.665e-7755.00hypothetical protein SDRG_07463 [Saprolegnia dicli... [more]
gi|813206241|ref|XP_012210118.1|8.925e-7754.55hypothetical protein SPRG_14796 [Saprolegnia paras... [more]
gi|299116962|emb|CBN75066.1|3.227e-7656.54conserved unknown protein [Ectocarpus siliculosus][more]
gi|1214700589|gb|OWZ13143.1|2.152e-7553.57Vesicle-associated membrane protein [Phytophthora ... [more]
gi|698804758|ref|XP_009835408.1|2.348e-7550.91hypothetical protein, variant [Aphanomyces astaci]... [more]
gi|675162313|ref|XP_008890041.1|3.592e-7553.57hypothetical protein PPTG_00403 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4715rna4715Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications