rna4714, rna4714 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4714
Unique Name	rna4714
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1130
Alignment location	CM002464.1:152593..155064 -

Link to JBrowse

Properties


Property Name	Value
Product	atp-dependent rna helicase ddx42
Orig transcript id	gnl\|cribi\|Naga_100774g1.10599.mrna
Orig protein id	gnl\|cribi\|Naga_100774g1.10599
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:152593..155064 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100774g1	gene4551	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25970.1	cds4702	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4714	rna4714-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:152593..155064-
coding sequence from alignment at CM002464.1:152593..155064-

mRNA sequence

>rna4714 ID=rna4714|Name=rna4714|organism=Nannochloropsis gaditana|type=mRNA|length=1130bp
GATGTGAGGGACTTTAACTGTTCAGCGGGCACCTCCCTCGTCCCTGGCAT
CTTACCGAGTTAAATGACTTTATGAGCCCGTTTAGCACTGTTTGCAGGGG
GCATCCCACTGTCCACTGTCCAATCAAGCAATTCAAATGCTGACTCTTTC
ACATCTACTCTTCTGGAAGCATTTCTGAGGCTAAATTGACGCGGAGACAA
TTCGATCGATCGCCTCCACCTCCTCACTCAACCTCCCCTGCCTTCCCTCC
ATCCGCTCCTCTTCGCAGTCGAGCACCCACCATGCCGAAACGACGACGCG
TGAATCAAGAAAAAGGGAACGATGTTGCCGGCGAGGACGACAAAATCGTC
CCGTCCCCGGTTATCCAGGTTCCCTTCCAAGAGCAGCGAGTCCTGTTTAA
GCTGGCCCTCCTTCCGGACGCGATGGGCAATTTGGAGGAAAGCATACACG
AGAAACTTCACGGCATGCTCATGAAGTACAACCAGGACGTGGGCGGGATC
TTGCTCACTCTATCCCAGGTGCGTTTCCCTCCGTCCCGGAGGTTCGCCAG
CATGATGGGGGATTTGCCGCATTTGCACGTGCGGGTGGAAGCCACCTCCC
TGGTCTTTACGCCGGAGCCTGGCATGTCCTTGACGGGCGTGGTGATCAAG
GTCACGTCCACGCACGTGGCCTTGTTGGTGTACGGCCTGTTCAACGCGGC
GATTGCCAGGGAGGACATGCCCGACGCCTACGCATTTGACTACGACCGGG
AAGCCTGGGTGGGCACAGGAGGGAAGGAAGTACTCGGGCTAGGGGAGGAG
GTGGCGTTCCGGGTTGTGCTAGTGCACGAAGCGGCCGGTCTAATCGCTTT
GGATGGGTCCCTGCGGGAAGAGGGGGGCGAGCCGCGGGCGCCCGTGGCGG
GCTTGCGGGAGGGGGATGGAGGGGGAAAAGGAGGGGAAGGGGGGAGGGAG
GTCGAGGAGGAGGAAAGGAAGGGAGGGGCGGGAAGGGAGGGAAAGAAAAG
AGATACGAGGGGGACAGCAGAAGAAGGCGCGAGCGTAAAGAAGAGGAAGG
AGGGGACGGGGAAGGCGGAGGCGAAAGCCCACAAGAAAGGGAAGGGAAAG
CGCCTCAAAGGAGAGAAGGGACCGGCCTAG

protein sequence of rna4714

>rna4714-protein ID=rna4714-protein|Name=rna4714|organism=Nannochloropsis gaditana|type=polypeptide|length=824bp
MNFRRPGGQAYRPTSSNRNAGNPFASKNDPSGSNAGAGSTVRASQQSQSV
KDWFDDEDEEGDGRGKRRGAPSGLGIGGEEEEDPIDAFIKEQQGSCHQGK
NGALNDSSKAVSSTPGPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVE
KPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVY
AAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASM
SYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKH
ATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLA
FVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGAR
VAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVL
DEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDP
IRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVS
SKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKR
QEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSME
AHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVP
DALRAMVRGGGRGGGHGGGRGGGQGGGRGGGRGGGRSGSREDFRFAKPPA
SYKVTAGIGFGGGGGGEGGGGGGGGGGGGGRGRGAMMSSFVRQQEDFRTV
RGDGGGEGEGREEGGGGGGRRREG

mRNA from alignment at CM002464.1:152593..155064-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4714 ID=rna4714|Name=rna4714|organism=Nannochloropsis gaditana|type=mRNA|length=2472bp|location=Sequence derived from alignment at CM002464.1:152593..155064- (Nannochloropsis gaditana)
ATGAATTTTCGCCGGCCTGGTGGACAGGCTTATCGCCCCACGTCCTCGAA
CAGGAATGCAGGGAACCCCTTTGCCAGCAAAAACGATCCATCTGGTTCAA
ATGCCGGCGCAGGCTCCACCGTCAGAGCGTCTCAGCAGTCTCAGAGTGTG
AAAGATTGGTTCGATGACGAGGATGAAGAGGGCGATGGACGCGGAAAGAG
ACGTGGAGCACCTTCGGGCTTAGGCATTGGGGGGGAGGAGGAAGAAGACC
CAATAGATGCATTTATCAAAGAACAGCAGGGCTCGTGTCACCAAGGCAAA
AATGGCGCTCTGAATGATAGTTCAAAAGCTGTCAGTTCGACGCCGGGTCC
GGAGAAGGAGGAAGACGTAGATCCCCTGGACGCTTTCATGGTGGGTGTGC
AGAGTAAAGTGGAAGAGGAAGCCCGTCACACCACGGAGGCTGGGGTGGAA
AAACCTGTGTTCCTCGACGAGACCGCAGCAGAGGAAGAAGAAGGCGTGAG
AGAGGAAGAGGAGTACTCGGAGGAAGGAGACGGGGGGTATATCAGCCGTC
GGCGACCAGGGGAGGACGATGCGGACTATGACTCGGATGCCGAAGTGTAC
GCTGCTGGGGCGGCAGCAGAGGCAGCAGTTGCGGGCAAAGGAGGAGACGA
TAGGGCTCTTGGCCTGGTGCCTGGGAAGATGTACAGCCGGGTGGGGCCGG
AAGGGAAGAAGGCGATGGAGAGCTTGCCCCCTCTGGACCACGCCAGCATG
TCCTACCCGCCGTTTCGAAAATGTTTCTACACGGAGGACCCGGAGGTGAC
GGCGATGGATTGGGAAGAGATGTTAAGGTACCGGGAAGAGGAATTGCAGG
TGCAGGTGGAAGGGCGGGAAAGCTGCCGTCCCATCGTGTCCTTCAAGCAC
GCCACGGGCTTTTCCGAGACATTATTGCGCGAAATCATCAAGCGGGGTTT
TCAAGCCCCCACCCCCATCCAAGCGCAAGCCCTGCCCCTCGCTTTGGCCG
GTCGCGACGTGCTGGGGATCGCGCAGACGGGGAGCGGGAAGACCTTGGCC
TTCGTGTGGCCGGCCCTGGTGCATCTTATGGACCAACCGGAGGTGGTCAA
AGGGGAAGGGCCCATCGTCTTGATCCTCGCACCTACCAGGGAACTGGCAT
CGCAGATTTATGTGGAGGCTCTCAAATTTGCCAAGCCGCACGGGGCGAGA
GTGGCGGCCGTCTTTGGCGGGGCAGGGAAATGGGAGCAGAGCAAATTGTT
GAAGGCAGGTGTGGAGATCTTGATCGCCACCCCGGGGCGCCTGCTCGAAC
ATTTGAAGGGGAAAGCCACGAATTTGTTCCGGTGCACTTTCTTGGTCCTG
GACGAAGCGGATCGTATGTTTGACTTGGGCTTCGAATCTCAGATTCATTC
CGTCCTCGGACAGATTCGACCGGACCGGCAAAGCCTTATGTTCTCCGCCA
CTTTCAAACGGAAAGTGGAGAATTTGGCGCGAAAAGTGCTGCGCGATCCG
ATCCGCATCGTCTGTGGCCGGGCAGGGCAGGCCAACGAGGACGTGAGGCA
GGAAGTGGTGGTGGTGCCGAGGGAGGAAGGGAAGGAGGAATGGTTGTTCC
AGAAATTTTCGAGCCTGGTGGAGGCAGGAAAGGTGCTGGTCTTTGTGTCG
AGCAAACAAGGGTGCGAAGACGTGGCCGGGCGCTTGCGAACGATGTTGAT
GAGGAGGGAAGGAAGTAGCGCGGGAGGGTGGGAGGTAGAGACTTTGCATG
GAGACAAGGACCAGAGCGAACGGTCCCTGATCATGCGCCGGTTCAAGCGC
CAGGAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGG
GCGGTGTCGGGTGCTGGTGGCGACGGACGTGGCGTCGCGGGGCTTAGACA
TTAAAGACGTCCGGAACGTGGTCAATTACGACATGGCCCGGTCCATGGAA
GCGCACGTGCATCGATGTGGGCGGACAGGGCGGATGAGCGTGGAAGGAGG
GAGGGAGGGAGGGACGGCCTACACATTGTTGACTCCGAAGGACGCGGGTA
TGGCGGGGGAACTGGTGAAGGGCCTGGAAGGGGCGCGACAGGAGGTTCCG
GACGCCTTGAGGGCGATGGTACGGGGGGGAGGGAGGGGAGGAGGACATGG
GGGAGGGAGAGGGGGAGGACAGGGGGGAGGGAGGGGGGGAGGGAGAGGGG
GAGGGCGGTCTGGGAGCCGGGAAGATTTCCGATTTGCAAAGCCGCCGGCC
TCGTACAAGGTGACGGCTGGGATAGGTTTTGGAGGAGGAGGAGGAGGGGA
AGGAGGTGGAGGAGGTGGAGGGGGAGGAGGAGGAGGAGGGAGGGGAAGAG
GGGCCATGATGTCCTCGTTTGTGAGACAGCAGGAGGATTTTCGGACGGTG
AGAGGAGATGGTGGCGGGGAGGGAGAAGGACGGGAGGAGGGAGGAGGGGG
GGGGGGGAGGAGGAGGGAGGGA

Coding sequence (CDS) from alignment at CM002464.1:152593..155064-

>rna4714 ID=rna4714|Name=rna4714|organism=Nannochloropsis gaditana|type=CDS|length=2472bp|location=Sequence derived from alignment at CM002464.1:152593..155064- (Nannochloropsis gaditana)
ATGAATTTTCGCCGGCCTGGTGGACAGGCTTATCGCCCCACGTCCTCGAA
CAGGAATGCAGGGAACCCCTTTGCCAGCAAAAACGATCCATCTGGTTCAA
ATGCCGGCGCAGGCTCCACCGTCAGAGCGTCTCAGCAGTCTCAGAGTGTG
AAAGATTGGTTCGATGACGAGGATGAAGAGGGCGATGGACGCGGAAAGAG
ACGTGGAGCACCTTCGGGCTTAGGCATTGGGGGGGAGGAGGAAGAAGACC
CAATAGATGCATTTATCAAAGAACAGCAGGGCTCGTGTCACCAAGGCAAA
AATGGCGCTCTGAATGATAGTTCAAAAGCTGTCAGTTCGACGCCGGGTCC
GGAGAAGGAGGAAGACGTAGATCCCCTGGACGCTTTCATGGTGGGTGTGC
AGAGTAAAGTGGAAGAGGAAGCCCGTCACACCACGGAGGCTGGGGTGGAA
AAACCTGTGTTCCTCGACGAGACCGCAGCAGAGGAAGAAGAAGGCGTGAG
AGAGGAAGAGGAGTACTCGGAGGAAGGAGACGGGGGGTATATCAGCCGTC
GGCGACCAGGGGAGGACGATGCGGACTATGACTCGGATGCCGAAGTGTAC
GCTGCTGGGGCGGCAGCAGAGGCAGCAGTTGCGGGCAAAGGAGGAGACGA
TAGGGCTCTTGGCCTGGTGCCTGGGAAGATGTACAGCCGGGTGGGGCCGG
AAGGGAAGAAGGCGATGGAGAGCTTGCCCCCTCTGGACCACGCCAGCATG
TCCTACCCGCCGTTTCGAAAATGTTTCTACACGGAGGACCCGGAGGTGAC
GGCGATGGATTGGGAAGAGATGTTAAGGTACCGGGAAGAGGAATTGCAGG
TGCAGGTGGAAGGGCGGGAAAGCTGCCGTCCCATCGTGTCCTTCAAGCAC
GCCACGGGCTTTTCCGAGACATTATTGCGCGAAATCATCAAGCGGGGTTT
TCAAGCCCCCACCCCCATCCAAGCGCAAGCCCTGCCCCTCGCTTTGGCCG
GTCGCGACGTGCTGGGGATCGCGCAGACGGGGAGCGGGAAGACCTTGGCC
TTCGTGTGGCCGGCCCTGGTGCATCTTATGGACCAACCGGAGGTGGTCAA
AGGGGAAGGGCCCATCGTCTTGATCCTCGCACCTACCAGGGAACTGGCAT
CGCAGATTTATGTGGAGGCTCTCAAATTTGCCAAGCCGCACGGGGCGAGA
GTGGCGGCCGTCTTTGGCGGGGCAGGGAAATGGGAGCAGAGCAAATTGTT
GAAGGCAGGTGTGGAGATCTTGATCGCCACCCCGGGGCGCCTGCTCGAAC
ATTTGAAGGGGAAAGCCACGAATTTGTTCCGGTGCACTTTCTTGGTCCTG
GACGAAGCGGATCGTATGTTTGACTTGGGCTTCGAATCTCAGATTCATTC
CGTCCTCGGACAGATTCGACCGGACCGGCAAAGCCTTATGTTCTCCGCCA
CTTTCAAACGGAAAGTGGAGAATTTGGCGCGAAAAGTGCTGCGCGATCCG
ATCCGCATCGTCTGTGGCCGGGCAGGGCAGGCCAACGAGGACGTGAGGCA
GGAAGTGGTGGTGGTGCCGAGGGAGGAAGGGAAGGAGGAATGGTTGTTCC
AGAAATTTTCGAGCCTGGTGGAGGCAGGAAAGGTGCTGGTCTTTGTGTCG
AGCAAACAAGGGTGCGAAGACGTGGCCGGGCGCTTGCGAACGATGTTGAT
GAGGAGGGAAGGAAGTAGCGCGGGAGGGTGGGAGGTAGAGACTTTGCATG
GAGACAAGGACCAGAGCGAACGGTCCCTGATCATGCGCCGGTTCAAGCGC
CAGGAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGGGAAGGAGGGCGG
GCGGTGTCGGGTGCTGGTGGCGACGGACGTGGCGTCGCGGGGCTTAGACA
TTAAAGACGTCCGGAACGTGGTCAATTACGACATGGCCCGGTCCATGGAA
GCGCACGTGCATCGATGTGGGCGGACAGGGCGGATGAGCGTGGAAGGAGG
GAGGGAGGGAGGGACGGCCTACACATTGTTGACTCCGAAGGACGCGGGTA
TGGCGGGGGAACTGGTGAAGGGCCTGGAAGGGGCGCGACAGGAGGTTCCG
GACGCCTTGAGGGCGATGGTACGGGGGGGAGGGAGGGGAGGAGGACATGG
GGGAGGGAGAGGGGGAGGACAGGGGGGAGGGAGGGGGGGAGGGAGAGGGG
GAGGGCGGTCTGGGAGCCGGGAAGATTTCCGATTTGCAAAGCCGCCGGCC
TCGTACAAGGTGACGGCTGGGATAGGTTTTGGAGGAGGAGGAGGAGGGGA
AGGAGGTGGAGGAGGTGGAGGGGGAGGAGGAGGAGGAGGGAGGGGAAGAG
GGGCCATGATGTCCTCGTTTGTGAGACAGCAGGAGGATTTTCGGACGGTG
AGAGGAGATGGTGGCGGGGAGGGAGAAGGACGGGAGGAGGGAGGAGGGGG
GGGGGGGAGGAGGAGGGAGGGA

Synonyms

Publications