EWM25970.1, cds4702 (CDS) Nannochloropsis gaditana

Overview
NameEWM25970.1
Unique Namecds4702
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:152593..155064 -

Link to JBrowse

Properties
Property NameValue
Start range152593
Start range.
Protein idEWM25970.1
Productatp-dependent rna helicase ddx42
Partialtrue
Orig transcript idgnl|cribi|Naga_100774g1.10599.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:152593..155064 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0005524ATP binding
Vocabulary: INTERPRO
TermDefinition
IPR014014RNA_helicase_DEAD_Q_motif
IPR000629RNA-helicase_DEAD-box_CS
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR001650Helicase_C
IPR014001Helicase_ATP-bd
Homology
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|585107864|gb|EWM25970.1| (atp-dependent rna helicase ddx42, partial [Nannochloropsis gaditana])

HSP 1 Score: 1640.55 bits (4247), Expect = 0.000e+0
Identity = 824/824 (100.00%), Postives = 824/824 (100.00%), Query Frame = 0
Query:    1 MNFRRPGGQAYRPTSSNRNAGNPFASKNDPSGSNAGAGSTVRASQQSQSVKDWFDDEDEEGDGRGKRRGAPSGLGIGGEEEEDPIDAFIKEQQGSCHQGKNGALNDSSKAVSSTPGPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGRGGGHGGGRGGGQGGGRGGGRGGGRSGSREDFRFAKPPASYKVTAGIGFGGGGGGEGGGGGGGGGGGGGRGRGAMMSSFVRQQEDFRTVRGDGGGEGEGREEGGGGGGRRREG 824
            MNFRRPGGQAYRPTSSNRNAGNPFASKNDPSGSNAGAGSTVRASQQSQSVKDWFDDEDEEGDGRGKRRGAPSGLGIGGEEEEDPIDAFIKEQQGSCHQGKNGALNDSSKAVSSTPGPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGRGGGHGGGRGGGQGGGRGGGRGGGRSGSREDFRFAKPPASYKVTAGIGFGGGGGGEGGGGGGGGGGGGGRGRGAMMSSFVRQQEDFRTVRGDGGGEGEGREEGGGGGGRRREG
Sbjct:    1 MNFRRPGGQAYRPTSSNRNAGNPFASKNDPSGSNAGAGSTVRASQQSQSVKDWFDDEDEEGDGRGKRRGAPSGLGIGGEEEEDPIDAFIKEQQGSCHQGKNGALNDSSKAVSSTPGPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGRGGGHGGGRGGGQGGGRGGGRGGGRSGSREDFRFAKPPASYKVTAGIGFGGGGGGEGGGGGGGGGGGGGRGRGAMMSSFVRQQEDFRTVRGDGGGEGEGREEGGGGGGRRREG 824          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|255548421|ref|XP_002515267.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Ricinus communis] >gi|223545747|gb|EEF47251.1| hypothetical protein RCOM_1346600 [Ricinus communis])

HSP 1 Score: 513.457 bits (1321), Expect = 2.813e-167
Identity = 279/614 (45.44%), Postives = 377/614 (61.40%), Query Frame = 0
Query:  116 GPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGED------DADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGRGGGHGGGRGGG 723
            G E+ +++DPLDAFM G+         H        P      A ++ E  R++E+ ++  +    +++  G         A YDSD EVYAA  A +A +     DD  + L             +K +E +PPLDH+ + Y PF K FY E P ++ M  +++  YR+  L ++V G +  RPI SF+  + FS  L+  I+K+G++ PT IQ QALP+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIY+EA KF+K HG RV+AV+GG  K EQ K LKAG +I++ATPGRL++ LK KA N+ + T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DPIR+  G  G ANED+ Q V V+P +  K  WLF+K   +++ G VLVF S K   +++  +L          +  G++V  LHGDKDQ+ R  I+++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+AR M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q V   L  +    GR       R G 
Sbjct:   65 GAEENDEIDPLDAFMEGI---------HEEMKAAPPP-----KAKDKAEKYRDDEDDNDPMESFLKAKKDVGLTLAADALHAGYDSDEEVYAAAKAVDAGLLEYDSDDNPVVL------------DRKKIEPIPPLDHSLIDYEPFNKDFYEEKPSISGMSEQDVAEYRKS-LAIRVSGFDVPRPIKSFEDCS-FSMQLMNAIVKQGYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLEAKKFSKSHGIRVSAVYGGMSKLEQFKELKAGCDIVVATPGRLIDLLKMKALNMSKATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPIRVTVGEVGMANEDITQVVQVIPSDAEKLPWLFEKLPGMIDDGDVLVFASKKATVDEIESQL----------AQKGFKVAALHGDKDQASRMEILQKFK----------------SGVYHVLIATDVAARGLDIKSLKSVVNFDIARDMDMHVHRIGRTGR----AGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSGELMDLAMKDGRFRSKRDARKGA 620          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|1109245605|ref|XP_019197538.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Ipomoea nil])

HSP 1 Score: 507.294 bits (1305), Expect = 3.298e-165
Identity = 277/593 (46.71%), Postives = 371/593 (62.56%), Query Frame = 0
Query:  120 EEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            ++++DPLDAFM G+    EE          EK   LD+   + E+   E    +++  G  ++       +A Y+SD EVYAA  A +A +     DD  + L             KK +E +P LDH+S+ Y PF K FY E+P ++ M  ++++ YR   L ++V G +  RP+ +F+   GFS  LL+ I K+ ++ PTPIQ QALP+AL+G D++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIYVE  KFAK HG RV+AV+GG  K EQ K LKAG EI++ATPGRL++ L+ KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+P +  K  WL +K   L++ G VLVF S K   +++  +L  M          G++V  LHGDKDQ+ R   +++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+A+ M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q VP  L  +    GR
Sbjct:   76 DDEIDPLDAFMEGIH---EEMKAAPPPKPKEK---LDKYKDDIEDDPMESFLKAKKDIGLQLAAEAL---NAGYNSDEEVYAAAKAVDAGLVEYDSDDNPIIL------------DKKKIEPIPALDHSSIDYEPFNKDFYEENPSISGMSEQDVIEYRNS-LAIRVSGFDVPRPVKTFEDC-GFSVELLKAISKQAYEKPTPIQCQALPIALSGGDIIGIAKTGSGKTAAFVLPLMVHIMDQPELEKEEGPIGVICAPTRELAHQIYVETKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLRMKAVTMTRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEIGMANEDITQVVQVIPSDAEKLPWLLEKLPGLIDDGDVLVFASKKATVDEIESQLAQM----------GFKVAALHGDKDQASRMETLQKFK----------------SGIYHVLIATDVAARGLDIKSIKSVVNFDVAKDMDMHVHRIGRTGR----AGDKDGTAYTLITQKEARFAGELVNSLITAGQNVPAELMDLAMKDGR 615          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|147821303|emb|CAN74586.1| (hypothetical protein VITISV_041989 [Vitis vinifera])

HSP 1 Score: 505.368 bits (1300), Expect = 2.319e-164
Identity = 275/600 (45.83%), Postives = 366/600 (61.00%), Query Frame = 0
Query:  123 VDPLDAFMVGVQS--------KVEEEARHTTEAGVEKPV--FLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            +DPLDAFM G+          KV E+A    +   + P+  FL    A+++ G+    +    G                YDSD EVYAA  A +A +     DD  + L             KK +E +P LDH+S+ Y PF K FY E   ++ M  +++  YR+  L ++V G +  RPI +F+   GFS  L+  I K+G++ PTPIQ QA P+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIY+E+ KFAKP+G RV+A++GG  K EQ K LK+G EI+IATPGRL++ +K KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+P +  K  WL  K   +++ G VLVF S K   +++  +L             G ++  LHGDKDQ+ R  I+++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+AR M+AHVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q VP  L  +    GR
Sbjct:   75 IDPLDAFMEGIHEEMRAPPPPKVVEKAEKYVDDDEDDPMESFL---RAKKDTGLALAADVMHAG----------------YDSDEEVYAAAKAVDAGLIEYDSDDNPIVL------------DKKKIEPIPALDHSSIEYEPFNKDFYEEKDSISGMTEQDVTEYRKS-LSIRVSGFDVPRPIKTFEDC-GFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASKKATVDEIESQL----------GQKGLKIAALHGDKDQASRMDILQKFK----------------SGIYHVLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGR----AGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPMELMDLAMKDGR 611          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|225437591|ref|XP_002277419.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Vitis vinifera] >gi|297743992|emb|CBI36962.3| unnamed protein product, partial [Vitis vinifera])

HSP 1 Score: 504.212 bits (1297), Expect = 5.244e-164
Identity = 276/590 (46.78%), Postives = 362/590 (61.36%), Query Frame = 0
Query:  123 VDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            +DPLDAFM G+    EE         VEK     E   +++E    E     + D G           A YDSD EVYAA  A +A +     DD  + L             KK +E +P LDH+S+ Y PF K FY E   ++ M  +++  YR+  L ++V G +  RPI +F+   GFS  L+  I K+G++ PTPIQ QA P+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIY+E+ KFAKP+G RV+A++GG  K EQ K LK+G EI+IATPGRL++ +K KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+P +  K  WL  K   +++ G VLVF S K   +++  +L             G ++  LHGDKDQ+ R  I+++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+AR M+AHVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q VP  L  +    GR
Sbjct:   75 IDPLDAFMEGIH---EEMRAPPPPKLVEKA----EKYVDDDEDDPMESFLRAKKDTGLALAADVMH--AGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVL------------DKKKIEPIPALDHSSIEYEPFNKDFYEEKDSISGMTEQDVTEYRKS-LSIRVSGFDVPRPIKTFEDC-GFSPQLMNAITKQGYEKPTPIQCQAFPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLESKKFAKPYGIRVSAIYGGMSKLEQFKELKSGCEIVIATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVQVIPSDAEKLPWLLDKLPGMIDDGDVLVFASKKATVDEIESQL----------GQKGLKIAALHGDKDQASRMDILQKFK----------------SGIYHVLIATDVAARGLDIKSIKSVVNFDIARDMDAHVHRIGRTGR----AGDKDGTAYTLITHKEARFAGELVGSLIAAGQNVPMELMDLAMKDGR 611          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|527198632|gb|EPS66709.1| (hypothetical protein M569_08067 [Genlisea aurea])

HSP 1 Score: 503.442 bits (1295), Expect = 5.873e-164
Identity = 268/596 (44.97%), Postives = 373/596 (62.58%), Query Frame = 0
Query:  120 EEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGV---REEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            EE++DPLDA+M G++ +++       +   +K  + D+   +  E     +++       D  +          A Y+SD EVYA   A +A +     DD  + +             K+ +E +PPLDH+S+ Y  F K FY E P ++ M+ +++  YR+  L +++ G +  RP+  F+   GFS  L++ I K+ ++ PTPIQ QALP+ L+GRD++GIA+TGSGKT +FV P +VH+MDQPE+ K EGPI +I APTRELA QIY+EA KF+K HG RVAAV+GG  K +Q K LKAG EI++ATPGRL++ +K KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+  +E K  WL +K   +++AG  LVF S K   ++    L + L++R      G++V  LHGDKDQ+ R  I++RFK                 G   VL+ATDVA+RGLDIK +++VVN+D+A+ M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q+VP  L  +    GR
Sbjct:   67 EEEIDPLDAYMNGLEEEIKAAPPPKAKEKFDK--YKDDAEDDPMESFLMAKKDVALQLAADALH----------AGYNSDEEVYAVAKAVDAGMIDYDSDDNPIVM------------DKRKIEPIPPLDHSSIDYEAFNKDFYEEKPSISGMNDQDVAEYRKG-LSIRISGFDVPRPVKKFEDC-GFSAELMKAIAKQTYENPTPIQCQALPIVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYLEAKKFSKVHGIRVAAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMIKMKALTMLRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVQVISSDEEKLPWLIEKLPGMIDAGDALVFASKKAAVDE----LESQLLQR------GFKVAALHGDKDQASRMEILQRFK----------------SGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGR----AGDKDGTAYTLITSKEARFAGELVNSLIAAGQDVPQELMDLAMKDGR 606          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|1009148011|ref|XP_015891717.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Ziziphus jujuba])

HSP 1 Score: 504.597 bits (1298), Expect = 6.004e-164
Identity = 285/609 (46.80%), Postives = 370/609 (60.76%), Query Frame = 0
Query:  105 NDSSKAVSSTPGPEKE-EDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            ND+SK          E E++DPLDAFM G+     EE R    A   KPV   E   ++EE    E     + D G           A YDSD EVYAA  A +A +     DD  + L             KK +E +P LDH+S+ Y PF K FY E   ++ M  ++   YR+  L ++V G +  RPI++F+   GFS  L+  I K+ ++ PTPIQ QALP+ L+G D++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIY+E+ KFAK HG RV+AV+GG  K EQ K LKAG EI++ATPGRL++ LK KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+P +  K  WL +K   +++ G VLVF S K   +++     T L +R       ++V  LHGDKDQ+ R   +++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+AR M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q V   L  +    GR
Sbjct:   58 NDTSKDGGDNGNGGAENEEIDPLDAFMEGIH----EEMR---SAPPPKPVEKAEKYKDDEEDDPVESFLRAKKDLGLTLASDALH--AGYDSDQEVYAAAKAVDAGLLEYDSDDNPVVL------------DKKKIEPIPALDHSSIDYEPFNKDFYEEKDSISGMSEQDAAEYRKS-LSIRVSGFDVPRPIMTFEDC-GFSSQLMNAIKKQAYEKPTPIQCQALPIVLSGTDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAPTRELAHQIYLESKKFAKSHGIRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDMLKMKALTMSRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILTDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPEMIDNGDVLVFASKKATVDEI----ETQLTQR------SFKVAALHGDKDQASRMETLQKFK----------------SGIYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR----AGDKDGTAYTLITQKEARFAGELVNSLVAAGQNVSVELMDLAMKDGR 613          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|1002257538|ref|XP_015633092.1| (PREDICTED: DEAD-box ATP-dependent RNA helicase 24 [Oryza sativa Japonica Group] >gi|122247124|sp|Q10MH8.1|RH24_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 24 >gi|108707754|gb|ABF95549.1| DEAD/DEAH box helicase family protein, expressed [Oryza sativa Japonica Group] >gi|113548375|dbj|BAF11818.1| Os03g0308500 [Oryza sativa Japonica Group] >gi|215737377|dbj|BAG96306.1| unnamed protein product [Oryza sativa Japonica Group] >gi|937908914|dbj|BAS83834.1| Os03g0308500 [Oryza sativa Japonica Group])

HSP 1 Score: 501.901 bits (1291), Expect = 4.264e-163
Identity = 272/593 (45.87%), Postives = 364/593 (61.38%), Query Frame = 0
Query:  120 EEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPVFLDETAAEEEEGVREEEEYSEEGDGGYISRRRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            EE++DPLDAFM  +Q ++           + +       A  ++E    E     + D G           A YDSD EVYAA  A +A +     DD  + +             KK +E +PPLDH+++ Y PF K FY E P V+ M  +E+  Y +  L ++V G +  RPI SF    GF   L+  I K+G++ PT IQ QALP+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI ++ APTRELA QIY+EA KFAKP+  RVAAV+GG  K++Q K LKAG EI+IATPGRL++ LK KA  +FR T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT   KVE LAR++L DPIR+  G+ G ANED++Q V V+P +  K  WL +K   +++ G VLVF + K   +++  +L          +  G+ +  LHGDKDQ+ R   +++FK                 G   VLVATDVA+RGLDIK ++ VVN+D+A+ M+ H+HR GRTGR     G + GTAYTL+T K+   AGELV  L  A Q+VP+ L  +    GR
Sbjct:   65 EEEIDPLDAFMAEIQEEIRAPPPAPKPEALRR-------ADSDDEDDPVESFLRAKKDSGLALAADAMH--AGYDSDEEVYAAAKAVDAGMMEYDSDDNPIVV------------DKKKIEPIPPLDHSTIEYEPFNKDFYEEKPSVSGMSEQEVADYMKS-LAIRVSGFDVPRPIKSFADC-GFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEIVIATPGRLIDLLKMKALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILTDPIRVTVGQVGSANEDIKQVVNVLPSDAEKMPWLLEKLPGMIDDGDVLVFAAKKARVDEIESQL----------NQRGFRIAALHGDKDQASRMETLQKFK----------------SGVYHVLVATDVAARGLDIKSIKTVVNFDIAKEMDMHIHRIGRTGR----AGDKDGTAYTLITQKEVRFAGELVHCLIAAGQDVPNELMDLAMKDGR 604          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|661879200|emb|CDP17060.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 501.516 bits (1290), Expect = 7.157e-163
Identity = 263/520 (50.58%), Postives = 339/520 (65.19%), Query Frame = 0
Query:  193 YDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            Y+SD EVYAA  A +A +     DD  + L             KK +E +P LDH+S+ Y PF K FY E   ++ M  +++  YR+  L V+V G +  RP+  F+   GFS  L++ I K+ ++ PTPIQ QALP+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIYVEA KFAKPHG RV+AV+GG  K +Q K LKAG EI++ATPGRL++ LK KA  + R T+LVLDEADRMFDLGFE QI SV+GQIRPDRQ+L+FSAT  RKVE LAR++L DPIR+  G  G ANED+ Q V V+P +  K  WL +K   L++ G VLVF S K   +D    L + L +R      G++V  LHGDKDQ+ R  ++++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+A+ M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q V   L  +    GR
Sbjct:  141 YNSDEEVYAAAKAVDAGLIEYDSDDNPILL------------DKKKIEPIPALDHSSIDYEPFNKDFYEEKASISGMSEQDIADYRKS-LAVRVSGFDVPRPLKMFEDC-GFSAELMKAIAKQAYEKPTPIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELAKEEGPIGVICAPTRELAHQIYVEAKKFAKPHGIRVSAVYGGMSKLDQFKELKAGCEIVVATPGRLIDMLKMKALTMLRATYLVLDEADRMFDLGFEPQIRSVVGQIRPDRQTLLFSATMPRKVEKLAREILTDPIRVTVGEVGMANEDITQFVQVIPSDAEKLPWLLEKLPGLIDGGDVLVFASKKATVDD----LESQLAQR------GFKVAALHGDKDQASRVEVLQKFK----------------SGTYHVLIATDVAARGLDIKSIKSVVNFDIAKDMDMHVHRIGRTGR----AGDKDGTAYTLITQKEARFAGELVNSLIAAGQNVSVELMDLAMKDGR 616          
BLAST of EWM25970.1 vs. NCBI_GenBank
Match: gi|641868284|gb|KDO86968.1| (hypothetical protein CISIN_1g003881mg [Citrus sinensis])

HSP 1 Score: 501.13 bits (1289), Expect = 1.223e-162
Identity = 283/612 (46.24%), Postives = 379/612 (61.93%), Query Frame = 0
Query:  105 NDSSKAVSST-PGPEKEEDVDPLDAFMVGVQSKVEEEARHTTEAGVEKPV-FLDETAAEEEEGVREEEEYSEEGDGGYISR--RRPGEDDADYDSDAEVYAAGAAAEAAVAGKGGDDRALGLVPGKMYSRVGPEGKKAMESLPPLDHASMSYPPFRKCFYTEDPEVTAMDWEEMLRYREEELQVQVEGRESCRPIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKGEGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATNLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKVLRDPIRIVCGRAGQANEDVRQEVVVVPREEGKEEWLFQKFSSLVEAGKVLVFVSSKQGCEDVAGRLRTMLMRREGSSAGGWEVETLHGDKDQSERSLIMRRFKRQEEGGKEGGKEGGKEGGRCRVLVATDVASRGLDIKDVRNVVNYDMARSMEAHVHRCGRTGRMSVEGGREGGTAYTLLTPKDAGMAGELVKGLEGARQEVPDALRAMVRGGGR 712
            ND++KA + T  G EKEE +DPLDAFM G+     EE R    A   KP   L+    ++EE   E    +++  G  ++    R G     YDSD EVYAA  A +A +     DD  + +             KK +E +P LDH+ + Y PF K FY +   ++ M  ++++ Y++  L ++V G +  RP+ +F+   GFS  L+  I K+G++ PT IQ QALP+ L+GRD++GIA+TGSGKT AFV P +VH+MDQPE+ K EGPI +I APTRELA QIY+E  KFAK HG RV+AV+GG  K +Q K LKAG EI+IATPGRL++ LK KA  + R T+LVLDEADRMFDLGFE QI S++GQIRPDRQ+L+FSAT  RKVE LAR++L DP+R+  G  G ANED+ Q V V+P +  K  WL +K   +++ G VLVF S K   +++  +L          +  G++   LHGDKDQ+ R  I+++FK                 G   VL+ATDVA+RGLDIK +++VVN+D+AR M+ HVHR GRTGR     G + GTAYTL+T K+A  AGELV  L  A Q V   L  +    GR
Sbjct:   56 NDAAKAANDTGNGAEKEE-IDPLDAFMEGIH----EEMR---AAPPPKPKEKLERYKDDDEEDPMESFLMAKKDVGLTLAADALRAG-----YDSDEEVYAAAKAVDAGMLDYDSDDNPVVV------------EKKKIEPIPALDHSLIDYEPFNKDFYQDSASISGMSEQDVMEYKKS-LAIRVSGFDVPRPVKTFEDC-GFSTQLMHAISKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLIDMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKLAREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKKTTVDEIESQL----------AQKGFKAAALHGDKDQASRMEILQKFK----------------SGVYHVLIATDVAARGLDIKSIKSVVNFDIARDMDMHVHRIGRTGR----AGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSMELMDLAMKDGR 610          
The following BLAST results are available for this feature:
BLAST of EWM25970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107864|gb|EWM25970.1|0.000e+0100.00atp-dependent rna helicase ddx42, partial [Nannoch... [more]
gi|255548421|ref|XP_002515267.1|2.813e-16745.44PREDICTED: DEAD-box ATP-dependent RNA helicase 24 ... [more]
gi|1109245605|ref|XP_019197538.1|3.298e-16546.71PREDICTED: DEAD-box ATP-dependent RNA helicase 24 ... [more]
gi|147821303|emb|CAN74586.1|2.319e-16445.83hypothetical protein VITISV_041989 [Vitis vinifera... [more]
gi|225437591|ref|XP_002277419.1|5.244e-16446.78PREDICTED: DEAD-box ATP-dependent RNA helicase 24 ... [more]
gi|527198632|gb|EPS66709.1|5.873e-16444.97hypothetical protein M569_08067 [Genlisea aurea][more]
gi|1009148011|ref|XP_015891717.1|6.004e-16446.80PREDICTED: DEAD-box ATP-dependent RNA helicase 24 ... [more]
gi|1002257538|ref|XP_015633092.1|4.264e-16345.87PREDICTED: DEAD-box ATP-dependent RNA helicase 24 ... [more]
gi|661879200|emb|CDP17060.1|7.157e-16350.58unnamed protein product [Coffea canephora][more]
gi|641868284|gb|KDO86968.1|1.223e-16246.24hypothetical protein CISIN_1g003881mg [Citrus sine... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4714rna4714Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications