rna4712, rna4712 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4712
Unique Name	rna4712
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3178
Alignment location	CM002464.1:149249..151011 -

Link to JBrowse

Properties


Property Name	Value
Product	peptide chain release factor 2
Orig transcript id	gnl\|cribi\|Naga_100557g2.10089.mrna
Orig protein id	gnl\|cribi\|Naga_100557g2.10089
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:149249..151011 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100557g2	gene4549	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25973.1	cds4700	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4712	rna4712-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:149249..151011-
coding sequence from alignment at CM002464.1:149249..151011-

mRNA sequence

>rna4712 ID=rna4712|Name=rna4712|organism=Nannochloropsis gaditana|type=mRNA|length=3178bp
GGTTGAAGTTGAAGTTTCGTCGCACGCCAAGTGCCAAACGAGCGAGAGCT
CTGGGCCTCCGTGAACACGTGGTAAACGCATATGTCCATGTCCTTTTGGC
GTCTTTCTGTATGTCAATATGACGACATACACGTAATCAACGCCACTACT
CGAGGATCGATCGAAAGGAAAGCTTTCATTTCATTTTCGTAGCTTGAATT
TCTGAGCCCATGGTAGGCGCACACGCACCCCCCTAGGCATCAGCCCCGCA
AGTTGAAAACGGAGAATGAATCGCGCATATCACGCCCGGTAAAAAAAGGT
TGAGCGCTGTTTGGCATGGAGTCAAAGCAATGGGACATGCAGAAAGATGT
CTGTCTGTCATGCTACATCGACGCCAGAGTTTTTTTGAGGGGGAAAAAGT
GAAAATGGCGGTTTGCGTCAACTTACCACTTTGACGAACGTGACACCTGC
GGGTGTCAATTTCTGTGCCATCGTTCTCATCCGTATGCCTTTTTTTCCCG
CAAAGCAGGACGAAATGAAAAGGTCCTTCACATGTTCCAATCTTATAGAC
CTATACGAGGGCCAAAAAGTTTTTTTACCCGATGGAAACTACAAAAATGG
AGTAAGTAGCACCTTGAACCCTCAGGTCCGGCTTGAGTATCCCCCCCCCT
TTTCGACGCAGCCCCGGGCCAAGCGACTGCATGCGGCTCCAAGAGCGAAC
GATAAAATACACGCCGAAATGAAGGATCTCAAAACACATGACGAGGGTGT
CAACGCCAAAGCGGCCATGAGCCAGATTGATCAGAGTATGCCTCCGCCTG
TGCCCACCTTTTCTTCTTCGTCCTTCCCTCTTCCTCCCTCGAGCGGGAAT
CGAAGAAATCTTTACATCCACGGCTCTGTCATCTTAACCGCTTGCCATCA
TCAACAATGGAAATCCAGTACAAAAGAAACTGCAATTTTAAAGGCAAGCA
ATCCGACACCCGCGCCATTCTCAACCCCATCCTCTTCCTCCTCCTCCTCC
TCGTCGTCCAGCTTTCTCTCCTCCTCCCTGCCGCCTTCTCCCCCTTCCAA
GCCTCTGTCTGCCTCCTCCATGGCTCTTTTCCGACGCTTGGGCCGGTCGT
CCTCTCTTACTTCCCTCCCACCTGGTGTTTCTCCGCCTTGCTCTCCTACC
CTCTCGGATCCGCCCGTTCCGATCTTCTCGCAGGAGGTAGCCCCGGGCCG
CAGGAGCAGCAACGGCAGTATATCTGCCCTCACTTCCTTAGGCTCCTCTT
CATATGGCTCGGGACCTCCTCCGTTGAAATCTCCTTGGGGGGCGCCCCCT
CCAAGGCTGGCGATGGAGGGAGGGGAAGCAGGAGGGCCTTGCCAGGAAGT
CGGAGGGGGAAATGGCGATGGCGACGGCAAATCGGTGCGCCGGGCTCAAT
TTTTGCTCATGTCTTCCACTTCATCCTCCACTTCATCTCTGACCAGCGAG
GGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAGGAGGAAGGGCAGTT
GGGAGGAACGACGGAGCGCGTGGATAGCGAGGAGAGCGGGAGGGAAGAAG
AATGCCCGGAGGATCTCTCCCAGGTGGCTCTTGCCGTAGGCCAGAGCAAG
TATGGCTTGTTCCCGTCGTCTTCCTCGCGTCCCGCCGCCCGCCCAGACCC
GACCCCGGCCAAGCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTAC
CCACCTGTACGCGGGCCCCACCACAAGCGGACTCCCTACTGCAACATTTG
TGGCAGTTGCGCGTGGCAGATCCGGACCCCATTTCCGGTTCTCGCTCCCT
CATGTCCAGGCAAGGAGGGCAAAGGGGAAGGGGAAGAGGGGGAGAAAGGA
GAGAGGTTAGGGTTAGGGTTACAGTGTAGGTGCCACAGCGTGCTAGATGA
GCGGGAATCAAAGGCTGGATGCACCCCTATGCCTCGCCCGCATCCCCTGC
GGCCGTGACTTGAAGGAGGGGAGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAGTTTTGTCATAGCTTT
GTCGGGTTCATGGGCCATGGAGGGGTATCCATGTGCGCTCTCCTCCTCAA
TCATGGTGTCTTTGTGGATAGAGAAGACGGTGTGTGGAGCAAGACGGTGT
GTGGGAAGGCAGGCGGGAGGGATGCGAATCGAAAACAGGAGGGCAAGGGG
TATGATGGAAATACAACCGTGGGCGGGCGAGTAGAGGTTGTTGCCACGTG
GCAGCAAGGGCAGGACTGTGCTCATTTTGAACGGAAGATAAAAGGGTACA
TTTGTGTGTATACACTGGGGACGATAAGGGGCTTTGTGAGGGGTTCGGGA
ATGGCAATCGTGTGCGTGGGACGAGGGATTTTTCGAGTTGCTCCTTGGTT
GCATAGACAATAAACGTTAGAAAGGGAGGACGGCCGAGTGGCATGATTCT
GCACACGGCGGGAGAGTCACCACCCCGCTTGTATTGGATGTGGGGAGAAC
TTGTAGATGCAGAGACTGTATGTTTGGATGTCGTGTAGAAAAAGCGGGGC
GGTGCCTGCGATCCTGCCGGACGCGTCGCTTCGTCCAATCGCTCAAATGA
GATGACCTCTTCCCAGTCCGTTGGGACAAAAGGGGCCAAGAAGATAAGAG
TCAAAGGGGAGGAAAAGTCGGGATTGTGGGGGCAAGGTCCAAGCTTCGAA
GGGAGGTTGAGGGGGACGCACACGCCCTGAGTCCGCTCCCAGGGGCAACG
ACTCTAGCTAGGCAAGCCCCTGCGGTCGGGAGGGGGTTCGATATGTATGG
TTCTCCTTTCGAATGAGAATCCATGCGCCCCGGTATTTTTGTTGTGCACC
AGGCTCGGACTCGACAGGGGGCACGGGTTTTCCCAAAAAACATGTGACGG
GGGGGATGGATAGACGGGGACGCAGACGACACGACAGGCATCGGGTATCC
AAGCCCGGGAATTTCCTCCCGTTAAAAAATCATGATTAATTTGACTGCGC
CGGTCTGGCCCGTGCTCAATGTTCGTTTTTAAGTTGCGGAGACAGCACGG
TGGATCCTTACATCGCCTATGCACATTTTTTGAAAATTGTTACCGGCCAT
TGCCCCGATTTTCCCCCCATTTCCCCCCTCCCAATCCCCGCAATTCTGGG
CCCCTCGGTCCACACCTCTCCCTTCTCC

protein sequence of rna4712

>rna4712-protein ID=rna4712-protein|Name=rna4712|organism=Nannochloropsis gaditana|type=polypeptide|length=557bp
MKGRSIQKISSAMTCRVSLKNGPCGPTRSVAIKTQARWTRASRTLFHPTP
LSRSTTIGVEAMRSWAWQWSRSLRGAGSAGLPFCLLPLLSLGSLPPVKSI
FTSAMTPSTFLRPPSWWPSCISVKGVPAPRHDLGSLSSASLRNGRRRSRR
MFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANT
AALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDR
WRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGP
YDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVST
EGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVE
VMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTG
LVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASW
GQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAA
EGKEEGG

mRNA from alignment at CM002464.1:149249..151011-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4712 ID=rna4712|Name=rna4712|organism=Nannochloropsis gaditana|type=mRNA|length=1763bp|location=Sequence derived from alignment at CM002464.1:149249..151011- (Nannochloropsis gaditana)
TAAAGTCCCTCACATCGGTAGGAAAAAAATATTGTCGACATCTCTCTCGA
TTATTCTGCCAATTTTAAGCGCTATACGACCGTGTTTTGATGAAAGGGAG
GTCGATACAGAAAATTTCATCAGCCATGACGTGCCGAGTATCTCTCAAAA
ATGGTCCTTGCGGCCCAACTCGCTCGGTTGCAATCAAAACCCAGGCTCGA
TGGACGCGTGCCTCACGCACGCTTTTCCACCCCACTCCACTATCGCGATC
TACCACCATAGGTGTTGAGGCGATGAGGTCATGGGCTTGGCAATGGTCCC
GTTCCTTGAGAGGGGCCGGGTCAGCTGGCCTCCCTTTCTGCCTTTTGCCC
CTCCTTTCCCTCGGATCCCTCCCCCCCGTCAAGTCCATCTTTACAAGTGC
CATGACACCGTCCACCTTCCTTCGGCCTCCCTCTTGGTGGCCTTCGTGCA
TCTCGGTCAAAGGGGTTCCGGCCCCGCGACACGATCTAGGAAGCCTCTCC
TCTGCCAGTCTACGTAATGGGCGGAGACGGTCGAGGCGCATGTTTTCTTC
CTCCTCCGCATCTTCCTCCCCTTCGTCTTCTTCTTCTTTCTCCTCCTCCA
TCCTGTCTTCCGCCGAGACGCCCATTCAGGACCCCGCCGAGCTCAAGCGG
GCGCTCGCGGAGGCCGCACGGGCCATTGAAGCCAACACCGCTGCCTTAAA
TCTGCCCAAAATCATGGGGGAAATCGATTACTGCGAACAAGAGGCAGCCC
AGGAGAGTTTCTGGGAGCGGCCGGGGGAGGCTCGGGAGAAAATGAGCGTC
TTGGCCGGGCTGCAAGGCACGGTGGCCCGTGTGGACCGATGGCGGCGACA
GTACGAGGACGTGGCGACCGCCCTGGCCCTGTGGGAGGAAGGAGGGGGGG
AGGAATGGGGAGAGGAAGGGAAGGAAGGGATGCGGAGACTCCAGCAGGAC
TTGGTCACGTGGGAGGTGGATCAGCTTTTGTCGGGCCCATACGATGCCTG
TGGGTGCCGAGTGGCCATCACTGCTGGGGCGGGGGGCACTGACGCCAGCG
ACTGGGCGGGGATGTTGCTGCGGATGTACTTGAGGTACGGGGAGAGGAAA
GGATGGAAGCTGCGAATGCTGGAGAAACAGGTGTCGACGGAAGGGGTGGG
GATCAAGGGGGCGCTGTTGGAAGTGGAGGGGGAGAAGGCGTACGGCTTAT
TGAAAGCGGAGGAAGGCACACACCGCCTGGTCCGGATCAGCCCTTTCAAC
GCGGCGGGGAAGCGGCAAACCTCCTTTGCAGGGGTGGAAGTGATGCCCAT
CCTGTCGGACGAGCGGCTGGAGGACGTGGTGCTGGCGGAGGGGGAGGTGG
AGATGACAACCTTTCGGTCGGGCGGGGCGGGGGGGCAGAACGTCAACAAG
GTGGAGACGGCGGTGCGACTCAAGCACTTGCCCACCGGCCTGGTGGCTCG
GTGCCAGGAGGAACGTTCCCAGATGTTGAACCGGAAAAAGGCGACGGCCC
TGCTCAAGGCCAAGCTCTTGGCGGTCAAAGAGGCGCAAAGGGTGGAGGCC
CTGGCAGAAATCCGGGGCGACCTGATCGAAGCCTCGTGGGGGCAGCAGAT
CCGAAACTACGTTCTGCATCCGTACAAACTCGTGAAGGATACCCGGAGCG
GGCGGGAAACCCCCGACGTGTCGGGCGTTTTGGACGGGGGGGAGGTGCTG
GAGGACTTCATCGGGGCCTACCTACGGTTGCGGGCGGCGGAGGGGAAGGA
GGAAGGAGGGTGA

Coding sequence (CDS) from alignment at CM002464.1:149249..151011-

>rna4712 ID=rna4712|Name=rna4712|organism=Nannochloropsis gaditana|type=CDS|length=1674bp|location=Sequence derived from alignment at CM002464.1:149249..151011- (Nannochloropsis gaditana)
ATGAAAGGGAGGTCGATACAGAAAATTTCATCAGCCATGACGTGCCGAGT
ATCTCTCAAAAATGGTCCTTGCGGCCCAACTCGCTCGGTTGCAATCAAAA
CCCAGGCTCGATGGACGCGTGCCTCACGCACGCTTTTCCACCCCACTCCA
CTATCGCGATCTACCACCATAGGTGTTGAGGCGATGAGGTCATGGGCTTG
GCAATGGTCCCGTTCCTTGAGAGGGGCCGGGTCAGCTGGCCTCCCTTTCT
GCCTTTTGCCCCTCCTTTCCCTCGGATCCCTCCCCCCCGTCAAGTCCATC
TTTACAAGTGCCATGACACCGTCCACCTTCCTTCGGCCTCCCTCTTGGTG
GCCTTCGTGCATCTCGGTCAAAGGGGTTCCGGCCCCGCGACACGATCTAG
GAAGCCTCTCCTCTGCCAGTCTACGTAATGGGCGGAGACGGTCGAGGCGC
ATGTTTTCTTCCTCCTCCGCATCTTCCTCCCCTTCGTCTTCTTCTTCTTT
CTCCTCCTCCATCCTGTCTTCCGCCGAGACGCCCATTCAGGACCCCGCCG
AGCTCAAGCGGGCGCTCGCGGAGGCCGCACGGGCCATTGAAGCCAACACC
GCTGCCTTAAATCTGCCCAAAATCATGGGGGAAATCGATTACTGCGAACA
AGAGGCAGCCCAGGAGAGTTTCTGGGAGCGGCCGGGGGAGGCTCGGGAGA
AAATGAGCGTCTTGGCCGGGCTGCAAGGCACGGTGGCCCGTGTGGACCGA
TGGCGGCGACAGTACGAGGACGTGGCGACCGCCCTGGCCCTGTGGGAGGA
AGGAGGGGGGGAGGAATGGGGAGAGGAAGGGAAGGAAGGGATGCGGAGAC
TCCAGCAGGACTTGGTCACGTGGGAGGTGGATCAGCTTTTGTCGGGCCCA
TACGATGCCTGTGGGTGCCGAGTGGCCATCACTGCTGGGGCGGGGGGCAC
TGACGCCAGCGACTGGGCGGGGATGTTGCTGCGGATGTACTTGAGGTACG
GGGAGAGGAAAGGATGGAAGCTGCGAATGCTGGAGAAACAGGTGTCGACG
GAAGGGGTGGGGATCAAGGGGGCGCTGTTGGAAGTGGAGGGGGAGAAGGC
GTACGGCTTATTGAAAGCGGAGGAAGGCACACACCGCCTGGTCCGGATCA
GCCCTTTCAACGCGGCGGGGAAGCGGCAAACCTCCTTTGCAGGGGTGGAA
GTGATGCCCATCCTGTCGGACGAGCGGCTGGAGGACGTGGTGCTGGCGGA
GGGGGAGGTGGAGATGACAACCTTTCGGTCGGGCGGGGCGGGGGGGCAGA
ACGTCAACAAGGTGGAGACGGCGGTGCGACTCAAGCACTTGCCCACCGGC
CTGGTGGCTCGGTGCCAGGAGGAACGTTCCCAGATGTTGAACCGGAAAAA
GGCGACGGCCCTGCTCAAGGCCAAGCTCTTGGCGGTCAAAGAGGCGCAAA
GGGTGGAGGCCCTGGCAGAAATCCGGGGCGACCTGATCGAAGCCTCGTGG
GGGCAGCAGATCCGAAACTACGTTCTGCATCCGTACAAACTCGTGAAGGA
TACCCGGAGCGGGCGGGAAACCCCCGACGTGTCGGGCGTTTTGGACGGGG
GGGAGGTGCTGGAGGACTTCATCGGGGCCTACCTACGGTTGCGGGCGGCG
GAGGGGAAGGAGGAAGGAGGGTGA

Synonyms

Publications