EWM25973.1, cds4700 (CDS) Nannochloropsis gaditana

Overview
NameEWM25973.1
Unique Namecds4700
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002464.1:149249..150922 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25973.1
Productpeptide chain release factor 2
Orig transcript idgnl|cribi|Naga_100557g2.10089.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002464.1supercontigCM002464.1:149249..150922 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003747translation release factor activity
GO:0016149translation release factor activity, codon specific
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
GO:0006415translational termination
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR004374PrfB
IPR014720dsRNA-bd_dom
IPR000352Pep_chain_release_fac_I_II
IPR005139PCRF
Homology
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|585107868|gb|EWM25973.1| (peptide chain release factor 2 [Nannochloropsis gaditana])

HSP 1 Score: 1124 bits (2906), Expect = 0.000e+0
Identity = 557/557 (100.00%), Postives = 557/557 (100.00%), Query Frame = 0
Query:    1 MKGRSIQKISSAMTCRVSLKNGPCGPTRSVAIKTQARWTRASRTLFHPTPLSRSTTIGVEAMRSWAWQWSRSLRGAGSAGLPFCLLPLLSLGSLPPVKSIFTSAMTPSTFLRPPSWWPSCISVKGVPAPRHDLGSLSSASLRNGRRRSRRMFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAAEGKEEGG 557
            MKGRSIQKISSAMTCRVSLKNGPCGPTRSVAIKTQARWTRASRTLFHPTPLSRSTTIGVEAMRSWAWQWSRSLRGAGSAGLPFCLLPLLSLGSLPPVKSIFTSAMTPSTFLRPPSWWPSCISVKGVPAPRHDLGSLSSASLRNGRRRSRRMFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAAEGKEEGG
Sbjct:    1 MKGRSIQKISSAMTCRVSLKNGPCGPTRSVAIKTQARWTRASRTLFHPTPLSRSTTIGVEAMRSWAWQWSRSLRGAGSAGLPFCLLPLLSLGSLPPVKSIFTSAMTPSTFLRPPSWWPSCISVKGVPAPRHDLGSLSSASLRNGRRRSRRMFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAAEGKEEGG 557          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|999846675|gb|AMK98483.1| (plastid peptide chain release factor 2 [Monodopsis sp. MarTras21])

HSP 1 Score: 453.366 bits (1165), Expect = 8.411e-152
Identity = 225/380 (59.21%), Postives = 280/380 (73.68%), Query Frame = 0
Query:  181 DPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGE--------------EWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            DPAE+KR L E    +EAN A+L+LP + GEIDY EQEAAQE FW++P +A++ MS +  L+ T+ R   W+ +  D+ TAL    E   E              +  EE     + L QDL  WEV+ LL+GPYD  GCR++ITAG GG DASDWAG+L+RMY R+ E+KGW  +++E     E  GIK A++E+EGE A+G+L AE+GTHRLVRISPFNAAGKRQTSFAGVE MPILS+E L+++ + E E+E +T R+GGAGGQNVNKVETAVRLKH+PTGLV RCQEER+Q++NRKKA  +LK KLL VKE QRVE LA+IRGDL+EASWGQQIRNYV HPYKLVKDTR+  ET ++  VLDG   LE+F+ AYLR
Sbjct:  103 DPAEIKRVLNECIPQVEANIASLDLPHLQGEIDYHEQEAAQEDFWDQPNKAKQIMSTITRLKSTLNRAKGWQSKIGDLETALQFLAEAEEEGAGGGPVMSVEETRDILEEADRTAKALVQDLERWEVESLLNGPYDNAGCRLSITAGVGGADASDWAGILMRMYQRFAEKKGWSCKVIEMS-PAEAFGIKSAIMEIEGEYAFGILAAEKGTHRLVRISPFNAAGKRQTSFAGVETMPILSEETLDNIEIPETELEFSTSRAGGAGGQNVNKVETAVRLKHIPTGLVVRCQEERTQLMNRKKALDMLKEKLLVVKEEQRVEELAQIRGDLVEASWGQQIRNYVFHPYKLVKDTRTEVETSNLQDVLDGD--LEEFVSAYLR 479          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|999846667|gb|AMK98479.1| (plastid peptide chain release factor 2 [Vischeria sp. CAUP Q 202])

HSP 1 Score: 426.787 bits (1096), Expect = 2.650e-142
Identity = 217/368 (58.97%), Postives = 270/368 (73.37%), Query Frame = 0
Query:  181 DPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALW-EEG-GGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            DP E KR+LA     I    + ++L  +  + DY E+EAAQE FW+ P EA+  MS L  ++ T+ARV  W  +  DV TAL L  EEG GG E  EE    +  L  DL  W+V+ LL+GPYD  GCR+ ITAG GG DASDWAG+LLRMY RY E+K +K+ + +   + EG GIK A LEVEGE AYGLL AE+GTHRLVRISPFNA GKRQTSFAGV+ MPIL +E L+++ + E ++E +T R+GGAGGQNVNKVETAVRLKH+PTG+V RCQEER+Q++NRK A  +LK KLLA+KE Q+VE L +IRGDL+EASWGQQIRNYV HPYKLVKDTR+  ET ++  VLDG   +++F+ AYLR
Sbjct:   47 DPMEAKRSLAALKDVIAGCMSNVDLGALEAQADYHEKEAAQEGFWDSPAEAKRIMSSLTRVKSTIARVKGWNTKVLDVETALMLAREEGEGGAEMVEEAARIIADLDSDLKRWQVESLLNGPYDQAGCRMYITAGVGGADASDWAGILLRMYERYAEKKVFKICVRDMSPAAEGFGIKSATLEVEGEYAYGLLAAEKGTHRLVRISPFNANGKRQTSFAGVDTMPILPEETLDEIDVPESDLEFSTSRAGGAGGQNVNKVETAVRLKHIPTGIVVRCQEERTQLMNRKMALDMLKEKLLAIKEEQKVEQLKDIRGDLVEASWGQQIRNYVFHPYKLVKDTRTEVETSNLQSVLDGE--IDEFVDAYLR 412          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|873234793|emb|CEM01602.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 379.022 bits (972), Expect = 5.751e-123
Identity = 189/368 (51.36%), Postives = 253/368 (68.75%), Query Frame = 0
Query:  184 ELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALW--EEGGGEEWGE---EGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            E+KR L       + N    +LP I  E+D  ++E  +E FW+ P  A +  + L  L+ + + V+ WRR  ED   A+     EE    E  E   E    M+RL + + +WE+++L+ GPYD  GCR+ +TAGAGGT++ DWA MLLRMYLR+ +RKGW+ R++++    E  GIK A +E+EGE AYGLL  E+GTHRLVRISPFNA GKRQTSFAGVE MPIL DE + D+ + + ++E+TT RSGG GGQNVNKVETAVR+ H+PT ++ +C +ERSQ+ N++ A  +LK +LL +KE QRV+ LAEIRGD+++A WG QIRNYVLHPYK+VKDTR+G ET     VLDG   +E F  +YLR
Sbjct:   83 EVKRTLDTLRERYDRNVELADLPSIGREMDSIQRETTKEDFWDDPARASKLSARLQRLKESRSSVEGWRRSLEDAEAAIDFVTSEELSDAERNEFLAESVTTMKRLSRHMDSWELEKLMDGPYDRVGCRLYVTAGAGGTESCDWADMLLRMYLRFAQRKGWRARVVDRSDGEEA-GIKSAEVEIEGEYAYGLLSGEKGTHRLVRISPFNAQGKRQTSFAGVETMPILPDEDVRDITIDDRDLEVTTMRSGGKGGQNVNKVETAVRILHIPTNIMVKCTQERSQLKNKEIALKMLKERLLVIKEEQRVQELAEIRGDMVQAEWGNQIRNYVLHPYKVVKDTRTGTETSAARDVLDGD--IEAFCESYLR 447          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|427354826|gb|AFY37549.1| (bacterial peptide chain release factor 2 (bRF-2) [Leptolyngbya sp. PCC 7376])

HSP 1 Score: 367.081 bits (941), Expect = 1.059e-119
Identity = 184/364 (50.55%), Postives = 249/364 (68.41%), Query Frame = 0
Query:  183 AELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            A+LKR+L   +  +      L+   +  +I   EQ AAQ  FWE    A+  M  L  L+  + + ++W  Q+ED      L E        +E  + +  LQ++L  WE+ Q+LSG YD  G  + I AGAGGTDA DWA MLLRMY R+ E++G+K+++ E     E  G+K A LE+EG  A+G LK+E+GTHRLVRISPFNA GKRQTSFAG+E+MP+L D+ ++ V + + ++E+TT R+GG GGQNVNKVETAVR+ HLPTG+  RC +ERSQ+ N++KA ALLKAKLL + + QR + +AEIRGD++EA+WG QIRNYV HPY++VKD R+ +ET DVSGV+DG   L+ FI AYLR
Sbjct:    5 ADLKRSLVMVSERLGKTQEYLDPKTLNAKIFDLEQVAAQPEFWENQDTAQTTMQELNDLKANLDQYEQWHSQFEDAEAIAELLELEDDPALLDEAIQNLETLQKELDRWELQQMLSGEYDNNGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVKLAEISEGDEA-GLKSATLEIEGRYAFGYLKSEKGTHRLVRISPFNANGKRQTSFAGIEIMPVLGDDAVK-VEIPDKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRTQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNKETTDVSGVMDGD--LDSFIEAYLR 364          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|1101983667|ref|WP_071533625.1| (MULTISPECIES: peptide chain release factor 2 [Arthrospira])

HSP 1 Score: 365.155 bits (936), Expect = 3.635e-119
Identity = 186/344 (54.07%), Postives = 241/344 (70.06%), Query Frame = 0
Query:  203 LNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
             ++P I  +I   EQ AAQ +FW+   +A++ +  L+ L+  + +   WR+  ED      L E    E   +E +  +  L +D+  WE+ QLLSGPYD  G  + I AGAGGTDA DWA MLLRMY R+GE +G+K+ + E     E  GIK A LE+EG  AYG LKAE+GTHRLVRISPFNA GKRQTSFAGVE+MPIL DE   ++ + E ++E+TT R+GG GGQNVNKVETAVR+ H+PTG+  RC +ERSQ+ NR+KA ALLKAKLL V + QR +A+AEIRGDL+EA+WG QIRNYV HPY++VKD R+G ET  ++ V++G   L+ FI AYLR
Sbjct:    2 FDVPAIEAKIQDLEQLAAQPNFWDDQTQAQKTLQTLSDLKSVLQQQQDWRKTLEDTGAIAELLELEDDESLRQEAESNVVHLGRDIDRWELQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAEISEGDEA-GIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPIL-DEGAINLDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKAKLLVVAQEQRAQAIAEIRGDLVEAAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNGE--LDGFIQAYLR 341          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|1179581853|ref|XP_020673951.1| (peptide chain release factor PrfB1, chloroplastic [Dendrobium catenatum])

HSP 1 Score: 369.007 bits (946), Expect = 3.859e-119
Identity = 197/424 (46.46%), Postives = 282/424 (66.51%), Query Frame = 0
Query:  135 SLSSASLRNGRRRSRRMFSSSSASSSPSSSSSFSSSILSSAETPIQDPAELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWG--EEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLRLRAAEGKEEG 556
            +L+++S  N  R S R+  + +A++   S+++ S +     E  +QD   L++ +  AA  +E  +AA  L  +  ++   E++AA+ S W+ P +A+E +  L  ++  + +V  ++ Q E+  T + L EE G  + G  EE  + +R L + L  +E+ QLLSGPYD  G  +AITAGAGGTDA DWA MLLRMY+R+GE++G+K R++EK    E  GIK A +E++G  AYG L  E+GTHR+VR SPFNA G RQTSFAGVEVMP+L +  + ++ + E ++E++  R+GG GGQNVNKVETAVR+ H+PTG+  RC EERSQ+ N+ KA + LKAKLL + E QR   + +IRGD ++A WGQQIRNYV HPYKLVKD R+G ET D++ V+DG   LE FI AYL+ + +    EG
Sbjct:   45 ALTASSHTNPLRSSPRLLQALNATAGSQSNAATSET----TEWAMQDFYGLRKDVQVAAERVEEISAATGLECLEADLSVLERKAAESSLWDDPSKAQEILLALTDIKYKIKQVKEFKSQVEEAETIVKLIEEFGSIDSGLLEEASKIIRELNKALNHFELAQLLSGPYDREGATIAITAGAGGTDAQDWADMLLRMYVRWGEKQGYKSRVVEKSAGDEA-GIKSATIEIDGRFAYGYLSGEKGTHRIVRQSPFNAKGLRQTSFAGVEVMPLLREGSI-NLDIPEEDLEISFSRAGGKGGQNVNKVETAVRIVHIPTGVTVRCTEERSQLANKIKALSRLKAKLLVIAEEQRAAEIKQIRGDAVKAEWGQQIRNYVFHPYKLVKDVRTGNETSDITSVMDGD--LESFIKAYLKYKYSAVASEG 460          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|737769805|ref|WP_035737831.1| (peptide chain release factor 2 [Arthrospira platensis] >gi|1015662695|gb|AMW29057.1| peptide chain release factor 2 [Arthrospira platensis YZ])

HSP 1 Score: 364.77 bits (935), Expect = 4.870e-119
Identity = 186/344 (54.07%), Postives = 241/344 (70.06%), Query Frame = 0
Query:  203 LNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
             ++P I  +I   EQ AAQ +FW+   +A++ +  L+ L+  + +   WR+  ED      L E    E   +E +  +  L +D+  WE+ QLLSGPYD  G  + I AGAGGTDA DWA MLLRMY R+GE +G+K+ + E     E  GIK A LE+EG  AYG LKAE+GTHRLVRISPFNA GKRQTSFAGVE+MPIL DE   ++ + E ++E+TT R+GG GGQNVNKVETAVR+ H+PTG+  RC +ERSQ+ NR+KA ALLKAKLL V + QR +A+AEIRGDL+EA+WG QIRNYV HPY++VKD R+G ET  ++ V++G   L+ FI AYLR
Sbjct:    2 FDVPAIEAKIQDLEQLAAQPNFWDDQTQAQKTLQTLSDLKSVLQQQQDWRKTLEDTGAIAELLELEDDESLRQEAESNVVHLGRDIDRWELQQLLSGPYDRSGAVLTINAGAGGTDAQDWAEMLLRMYTRWGEAQGYKVHLAELSEGDEA-GIKSATLEMEGPYAYGYLKAEKGTHRLVRISPFNANGKRQTSFAGVEIMPIL-DEGAINLDIPEKDLEITTSRAGGKGGQNVNKVETAVRIVHIPTGIAVRCTQERSQLQNREKAMALLKAKLLVVAQEQRAQAIAEIRGDLVEAAWGNQIRNYVFHPYQMVKDLRTGEETTAINDVMNGE--LDGFIQAYLR 341          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|428693689|gb|AFZ49839.1| (peptide chain release factor 2 [Dactylococcopsis salina PCC 8305])

HSP 1 Score: 363.229 bits (931), Expect = 2.570e-118
Identity = 186/363 (51.24%), Postives = 240/363 (66.12%), Query Frame = 0
Query:  184 ELKRALAEAARAIEANTAALNLPKIMGEIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            ELKR +   ++ +      L+LP I  +I+  EQ+AAQ  FW+ P  A+  +  L  L+    +  +WR + ED    L L E        EE  E ++ L Q L  WE+ QLLS PYD  G  + I  GAGGTDA DWA MLLRMY R+GE++G+ + + E     E  GIK A LE+EG   YG LK E+GTHRLVRISP+NA GKRQTSFAGVEVMP+L    ++D+ L E ++E+TT R+GG GGQNVNKVETAVR+ HLPTG+  RC +ERSQ+ NR+KA ALLK+KL+ + + QR + +AEIRGD +EA+WG QIRNYV HPY++VKD R+  ET  V  VLDG   +  F+ AYLR
Sbjct:    5 ELKREMETISQRLGKAQEYLDLPLIQAQIEDLEQQAAQPEFWDDPETAQGTLQKLNDLKSAWEQYQKWRDRAEDTKAILELLETEADHALWEEATENLQTLNQALDRWELQQLLSDPYDERGAVLTINTGAGGTDAQDWAQMLLRMYSRWGEKQGYTVNLAELSEGDEA-GIKSATLEIEGRYGYGYLKGEKGTHRLVRISPYNANGKRQTSFAGVEVMPMLDQTTIQDIELPEKDLEITTSRAGGKGGQNVNKVETAVRVVHLPTGIAVRCTQERSQLQNREKAIALLKSKLIVIAQEQRAQKIAEIRGDAVEAAWGNQIRNYVFHPYQMVKDLRTNVETSAVEDVLDGE--INPFVEAYLR 364          
BLAST of EWM25973.1 vs. NCBI_GenBank
Match: gi|1180372259|ref|WP_083891059.1| (peptide chain release factor 2 [Leptolyngbya sp. PCC 7376])

HSP 1 Score: 362.459 bits (929), Expect = 5.521e-118
Identity = 180/342 (52.63%), Postives = 240/342 (70.18%), Query Frame = 0
Query:  206 PKIMG-EIDYCEQEAAQESFWERPGEAREKMSVLAGLQGTVARVDRWRRQYEDVATALALWEEGGGEEWGEEGKEGMRRLQQDLVTWEVDQLLSGPYDACGCRVAITAGAGGTDASDWAGMLLRMYLRYGERKGWKLRMLEKQVSTEGVGIKGALLEVEGEKAYGLLKAEEGTHRLVRISPFNAAGKRQTSFAGVEVMPILSDERLEDVVLAEGEVEMTTFRSGGAGGQNVNKVETAVRLKHLPTGLVARCQEERSQMLNRKKATALLKAKLLAVKEAQRVEALAEIRGDLIEASWGQQIRNYVLHPYKLVKDTRSGRETPDVSGVLDGGEVLEDFIGAYLR 546
            PK +  +I   EQ AAQ  FWE    A+  M  L  L+  + + ++W  Q+ED      L E        +E  + +  LQ++L  WE+ Q+LSG YD  G  + I AGAGGTDA DWA MLLRMY R+ E++G+K+++ E     E  G+K A LE+EG  A+G LK+E+GTHRLVRISPFNA GKRQTSFAG+E+MP+L D+ ++ V + + ++E+TT R+GG GGQNVNKVETAVR+ HLPTG+  RC +ERSQ+ N++KA ALLKAKLL + + QR + +AEIRGD++EA+WG QIRNYV HPY++VKD R+ +ET DVSGV+DG   L+ FI AYLR
Sbjct:   17 PKTLNAKIFDLEQVAAQPEFWENQDTAQTTMQELNDLKANLDQYEQWHSQFEDAEAIAELLELEDDPALLDEAIQNLETLQKELDRWELQQMLSGEYDNNGAVLTINAGAGGTDAQDWAEMLLRMYTRWSEKQGYKVKLAEISEGDEA-GLKSATLEIEGRYAFGYLKSEKGTHRLVRISPFNANGKRQTSFAGIEIMPVLGDDAVK-VEIPDKDLEITTSRAGGKGGQNVNKVETAVRIVHLPTGIAVRCTQERSQLQNKEKAMALLKAKLLVIAQEQRTQEIAEIRGDMVEAAWGNQIRNYVFHPYQMVKDLRTNKETTDVSGVMDGD--LDSFIEAYLR 354          
The following BLAST results are available for this feature:
BLAST of EWM25973.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585107868|gb|EWM25973.1|0.000e+0100.00peptide chain release factor 2 [Nannochloropsis ga... [more]
gi|999846675|gb|AMK98483.1|8.411e-15259.21plastid peptide chain release factor 2 [Monodopsis... [more]
gi|999846667|gb|AMK98479.1|2.650e-14258.97plastid peptide chain release factor 2 [Vischeria ... [more]
gi|873234793|emb|CEM01602.1|5.751e-12351.36unnamed protein product [Vitrella brassicaformis C... [more]
gi|427354826|gb|AFY37549.1|1.059e-11950.55bacterial peptide chain release factor 2 (bRF-2) [... [more]
gi|1101983667|ref|WP_071533625.1|3.635e-11954.07MULTISPECIES: peptide chain release factor 2 [Arth... [more]
gi|1179581853|ref|XP_020673951.1|3.859e-11946.46peptide chain release factor PrfB1, chloroplastic ... [more]
gi|737769805|ref|WP_035737831.1|4.870e-11954.07peptide chain release factor 2 [Arthrospira platen... [more]
gi|428693689|gb|AFZ49839.1|2.570e-11851.24peptide chain release factor 2 [Dactylococcopsis s... [more]
gi|1180372259|ref|WP_083891059.1|5.521e-11852.63peptide chain release factor 2 [Leptolyngbya sp. P... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna4712rna4712Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications