rna4705, rna4705 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna4705
Unique Name	rna4705
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2969
Alignment location	CM002464.1:120557..121902 +

Link to JBrowse

Properties


Property Name	Value
Product	cytochrome c oxidase copper chaperone
Orig transcript id	gnl\|cribi\|Naga_100151g2.9622.mrna
Orig protein id	gnl\|cribi\|Naga_100151g2.9622
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002464.1	supercontig	CM002464.1:120557..121902 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100151g2	gene4541	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna4705	rna4705-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25988.1	cds4693	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002464.1:120557..121902+
coding sequence from alignment at CM002464.1:120557..121902+

mRNA sequence

>rna4705 ID=rna4705|Name=rna4705|organism=Nannochloropsis gaditana|type=mRNA|length=2969bp
AATGCCATGAACACCTCTAACGAGCCTTTGTTTCCCCATTCTCCAGCGTC
CACGATCGCACCTCTGTTATTATTTAATGGATAAGGTTGTGAGAAGACTT
ACTCTTACTGTCCAAGCCAGGCGTGAAGAAGCTTTCTTTGGTCGAGCACG
GTCATTATTTTCTGGTTTCAGTCCTCGACTGCTGTCGTCGCTCTCGTGCG
AGAGGCAGCGAGAAGAAATTTCCCTTCTAGATGCTTCCCGCGAGGAAAAT
AGCTAACCATGATAGGAGACCGTCACCATGTCTGACATATAGGTCGTTTG
AAGGAAGGATATGAACGGCGGCAACCTTGCGGCAGCGGGCAAATTTGTTG
CAGCGTTGTACTTGCTGCGGAGAGGGCCGTGAACAGGAACATCGAACTCT
TGGGAGCGCTCTCAGTGGACTAATCAATGAAACGCTACCTTGCCATTTGG
CATCTTTATCTCACTCTCCTCAATAAATGTACCCACATGCCATCTTCAGT
GACATCGAGGGCAACTTCTCTTCGATTGGCACGTCTCTTTCATAAAAGAG
GTGTGGAAAGGTACACGTTGGCGAAATAATTGCACAGAGTGGGGAACAGG
AAGATAGCATTTGCGGGCTTTAACCTGTCGTAAGACAAAGTACCACAGTC
CAAAGCCATACCGACGCCAACCGAACCCAGCAAAGACAACAACAGCAGCA
GTACGAAGAGAAAACGGCCGCGCGATTCAACCGGCACCCCTCCCCCAAAG
AAAGGAGGACATCGAACAGGAGACGAAACAACACGGACTGGCACGGGAAG
CGGAGGGAGCAGTGCAAAAAGCGAACAGAGCATGGGTAAGGACTACTACC
AAGTTCTTGGTGTCAGCCGAGGAGCAGATGACAAGGAAATCAAGAAGGCG
TATCGCAAGGAAGCCCTGCGATGGCATCCTGACAAGAATCCCGACAACCA
AGAACAAGCCCAAGCCAAATTTCAGGACATCTCCCAGGCCTTCGAGGTGC
TCTCCGACCCGGAGAAAAAGAAGATATATGACATGTACGGAGAGGATGGC
TTGAAGATGGGTGGCGGAGAGGCCCCGCCCGAGGGCCCCGGCGGCACGGG
GGGCATGGGCGGGTTCCCTGAGGGCTTTGCGGGCTTTGCGCGTGGAGGCG
GGGGCGGAGGAAGGGGGGGAGGTCGGGGGGGAGGGGGACAATTTCATTTC
GGGGGATTCAGCGATCCGGCCGATATTTTTGCGCAGTTTTTTGGGACCTC
GAGCGCCTTCGACGCGGACGGTTTCAGCTTCGATGACCTGGGAGGGGGAC
GCGGCGGGGCGCGGCAGCGGGTTCGCGGGATGGGCGGGATGGGAGGCATG
GGTGGGGTGCCTTTTGGCATGGGCCCCGGCGGATTTGGTGGTCCGGGTGC
TTCCCCTCCTCGGAGTTCCGGACCTCCGAAAAAGGCCGAGCCGTTGGAGT
ACAATTTTAACGTTACCTTGGAAGACCTCTACACCGGTGGAAAGCAGAAG
AAGATGCGGATCACGAAAAAGATCTGGGACGCGGCCTCGGGGAAATTTCT
GCACACGACCGTGGACAAGGAGATTCCCATCAAGAAAGGCTGGAAGAACG
GAACCAAGATCACGTTTGAGCGGGAGGGTGACGAGCTCCCAGGGGTCATC
CCCGCGGACATTGTCTTCATTTTGAACACGAAACCCCACCCCCGCTTCGA
GCGGGAAGGCGATGACCTGGTTTATGCCGCAACCGTTACCTTAGAGCAGG
CCTTAACCGGCGTCGAAGTCTCAGTCCAGACATTGGATGGTCGGGTTTTG
AAGGTAGTGAAAGGAGGGAGGGAGAGAGGGAGGGGGGCTGTTTGGTGCAT
GACGATGTATCTTTTCTCCTCACTCGCCAGAGCGAAGCATCCGGGGGGTT
TATGCCGGATTGTGGGACAGGCCTCGAAAAATGTAGAAGCTTGCTCCCCG
TCCGTGTTATTGGGGGCTTTCCAAAGGCCAGGAAGGCCTTTTTGGGATTG
GTGCAAATGTGGGGACGTCAGTGTCTGCTCTACTCCTATTGACTGTCTCT
TTTTTACCCGATCAGGTGAGCGAACCGCACGTCACCCCCGGGACCGTCAA
GATCCTGCGCGGGGAGGGGATGCCTCTGCAGAAGACCCCCGAAAAGAAAG
GCAACTTGCGCGTCAAGTTCAACATCGTCTTCCCCACGCTCTCGGAGACA
CAAAAGCAAGAGATCAAGCGGGTGTTGAGAGGAGGGAGGATGTAAGGGGA
ACCTGCCGAAGAAATTTACCAAATCTTGGGAGATGGAAGGATATGGACCG
GGACAAAAATTGGCAGTCCATTCTAGAAGGTGCATGTGTGGCAGATGGTG
GCTTGCGATCTAGAGATGACTTGTCATGACGAGATTTAATCGTCTCCTGC
CCCTTGATCCTGTAGAGAGGTCTCGTCACGCCGAGGCCCGGACGCGTGGA
GGTTTTTTGAGAGTAGGGAAATGCACGAGGAACACATACAGAAACATGGA
GAACACCTTCATGACTGATGATATGTCGTATGCCTATCAAAGTGGATGTA
TAGGAAGACGAGGAGTCGCGAACAGTCTTCGTGTGACGTGTTACCGGGTC
AAAAAAGGAAATAGATTCTAAGCAGTACTGAATATCCTTGTGGATTACAC
GCTTTTACCCTACATGCGATGCTTTCCATGAAAACATTGCAAGATGACAA
AAAGTGTGCCATGGTACATGGTGACCCGTAACAACGGTCTCGGAGTTGTG
ATGTCACCTCTCTAAAATGCATCCCTCATACGGGGAAAAAGAATCCTTGC
GCCGATTTCTTCTTCCAGGGCGCTGCATACAGTTGAGCATGCAAGTGCCG
TGATAGGCAGCTGCTTTGTTGATGTATTTTGATGACCAAGCTCGATTCGA
GAAATAACCTTCTGCCCATTGCCTGCGACGTAGAAGTACTGGAGTCTGAA
ACCACTTCGACACCAACGC

protein sequence of rna4705

>rna4705-protein ID=rna4705-protein|Name=rna4705|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MGTKASKPVEAEQPKLGKSGKKICCSCPDTKKIRDECVVNKGEEACADAI
EAHKACLRAEGFKTVTPGHASLNNLSFVSWPAVQRVRKRRRMTEGFWDSF
LAMVASHLESTKKATKGGKPSDDFGPAKKRGIYVPRKEGRACLKRGKKGA
EGFLANEVTTPKAIASKTPQHAGGLMGNTGVG

mRNA from alignment at CM002464.1:120557..121902+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna4705 ID=rna4705|Name=rna4705|organism=Nannochloropsis gaditana|type=mRNA|length=1346bp|location=Sequence derived from alignment at CM002464.1:120557..121902+ (Nannochloropsis gaditana)
ATGGGGACCAAAGCTTCGAAGCCGGTGGAAGCTGAGCAGCCAAAATTGGG
CAAAAGTGGAAAAAAAATCTGTTGCTCGTGCCCTGACACAAAAAAGGTGT
GTACGTATGGGAAACATTTTGATTCTAGAGTTTATATCACCAAGAGAGGT
AAATTATTTGGTAAACCATAATCCGTAGTTTTTGTCCCTTCCGCTACGAT
TGTAAGCTCGAATAATTGCTTGCAGGCGTGCACCCACCAAACGTGGGACT
GGAAGGAGATGATTTTACATTAATGAGGCGTCGAAATGGTGGAGGGACGA
CTTTTTCCCCATCACCATTTTCAATGAGGGCCTAAAGATGCTCCTTAAGG
CACCCTACCGTCTTTAGGAAGAGGATCGGTGtagtgagggggagagcgaa
ggGTACAGAGTGCGTACGGTACCTAAACCGTCAGAGGACTCAATGCATTG
GCACTTTCTCACGCAACCAAGGCTATCACGAAGCTTCGCAAGTGCCCAGA
GTTGCGTTGTTGTGTGTTTGTTTGAGCCTGCTTTTTGGCCGTTACATGCT
CATACACCCACGCGCCGTACGAAGTGCGTTCAGGAAAAGGAACAAGGCAT
Ctaaccctctccctccctccccccccccttccccgcctccccctccttcc
ctctcttttcttgtctCAGATCAGGGATGAATGTGTGGTGAACAAGGGCG
AAGAGGCGTGCGCAGATGCCATTGAAGCGCACAAGGCGTGTCTAAGAGCG
GAGGGATTCAAAGTCTGAGGCAGGGGTGGAACAGCATGGTGGGAGAATCA
ATAGACAGGAATTTAGACAGTAACCCCTGGGCATGCCAGTCTCAACAATT
TAAGCTTTGTATCGTGGCCTGCCGTCCAAAGGgtgcggaagaggaggagg
atgacagAAGGTTTTTGGGACAGCTTCCTCGCGATGGTGGCCTCTCACCT
TGAGTCCACGAAAAAGGCGACAAAAGGCGGGAAACCCAGCGATGATTTTG
GCCCTGccaagaaaagaggaatcTACGTACCccgaaaggaaggcagagcA
TGCttgaagaggggaaagaaaggaggtggTTTGAAAAGGTGGAAAAagtg
gaaaagggaaggaaaagaagggaggaaggaaatcgagggagggaagggag
gatggagtagagggagaaggagcggggagggaagtgaaggaagTGACGTG
TTGATGCTAAGAGGAGGTCATGAGCGACTTCCAACGAGGGTTTAGCGGAA
GGGTTTCTAGCAAATGAGGTCACTACACCAAAAGCAATTGCATCAAAGAC
ACCGCAACACGCAGGAGGGTTGATGGGGAATACAGGAGTAGGGTAA

Coding sequence (CDS) from alignment at CM002464.1:120557..121902+

>rna4705 ID=rna4705|Name=rna4705|organism=Nannochloropsis gaditana|type=CDS|length=2196bp|location=Sequence derived from alignment at CM002464.1:120557..121902+ (Nannochloropsis gaditana)
ATGGGGACCAAAGCTTCGAAGCCGGTGGAAGCTGAGCAGCCAAAATTGGG
CAAAAGTGGAAAAAAAATCTGTTGCTCGTGCCCTGACACAAAAAAGATCA
GGGATGAATGTGTGGTGAACAAGGGCGAAGAGGCGTGCGCAGATGCCATT
GAAGCGCACAAGGCGTGTCTAAGAGCGGAGGGATTCAAAACAGTAACCCC
TGGGCATGCCAGTCTCAACAATTTAAGCTTTGTATCGTGGCCTGCCGTCC
AAAGGgtgcggaagaggaggaggatgacagAAGGTTTTTGGGACAGCTTC
CTCGCGATGGTGGCCTCTCACCTTGAGTCCACGAAAAAGGCGACAAAAGG
CGGGAAACCCAGCGATGATTTTGGCCCTGccaagaaaagaggaatcTACG
TACCccgaaaggaaggcagagcATGCttgaagaggggaaagaaaggagCG
GAAGGGTTTCTAGCAAATGAGGTCACTACACCAAAAGCAATTGCATCAAA
GACACCGCAACACGCAGGAGGGTTGATGGGGAATACAGGAGTAGGGTAAA
TGGGGACCAAAGCTTCGAAGCCGGTGGAAGCTGAGCAGCCAAAATTGGGC
AAAAGTGGAAAAAAAATCTGTTGCTCGTGCCCTGACACAAAAAAGATCAG
GGATGAATGTGTGGTGAACAAGGGCGAAGAGGCGTGCGCAGATGCCATTG
AAGCGCACAAGGCGTGTCTAAGAGCGGAGGGATTCAAAACAGTAACCCCT
GGGCATGCCAGTCTCAACAATTTAAGCTTTGTATCGTGGCCTGCCGTCCA
AAGGgtgcggaagaggaggaggatgacagAAGGTTTTTGGGACAGCTTCC
TCGCGATGGTGGCCTCTCACCTTGAGTCCACGAAAAAGGCGACAAAAGGC
GGGAAACCCAGCGATGATTTTGGCCCTGccaagaaaagaggaatcTACGT
ACCccgaaaggaaggcagagcATGCttgaagaggggaaagaaaggagCGG
AAGGGTTTCTAGCAAATGAGGTCACTACACCAAAAGCAATTGCATCAAAG
ACACCGCAACACGCAGGAGGGTTGATGGGGAATACAGGAGTAGGGTAAAT
GGGGACCAAAGCTTCGAAGCCGGTGGAAGCTGAGCAGCCAAAATTGGGCA
AAAGTGGAAAAAAAATCTGTTGCTCGTGCCCTGACACAAAAAAGATCAGG
GATGAATGTGTGGTGAACAAGGGCGAAGAGGCGTGCGCAGATGCCATTGA
AGCGCACAAGGCGTGTCTAAGAGCGGAGGGATTCAAAACAGTAACCCCTG
GGCATGCCAGTCTCAACAATTTAAGCTTTGTATCGTGGCCTGCCGTCCAA
AGGgtgcggaagaggaggaggatgacagAAGGTTTTTGGGACAGCTTCCT
CGCGATGGTGGCCTCTCACCTTGAGTCCACGAAAAAGGCGACAAAAGGCG
GGAAACCCAGCGATGATTTTGGCCCTGccaagaaaagaggaatcTACGTA
CCccgaaaggaaggcagagcATGCttgaagaggggaaagaaaggagCGGA
AGGGTTTCTAGCAAATGAGGTCACTACACCAAAAGCAATTGCATCAAAGA
CACCGCAACACGCAGGAGGGTTGATGGGGAATACAGGAGTAGGGTAAATG
GGGACCAAAGCTTCGAAGCCGGTGGAAGCTGAGCAGCCAAAATTGGGCAA
AAGTGGAAAAAAAATCTGTTGCTCGTGCCCTGACACAAAAAAGATCAGGG
ATGAATGTGTGGTGAACAAGGGCGAAGAGGCGTGCGCAGATGCCATTGAA
GCGCACAAGGCGTGTCTAAGAGCGGAGGGATTCAAAACAGTAACCCCTGG
GCATGCCAGTCTCAACAATTTAAGCTTTGTATCGTGGCCTGCCGTCCAAA
GGgtgcggaagaggaggaggatgacagAAGGTTTTTGGGACAGCTTCCTC
GCGATGGTGGCCTCTCACCTTGAGTCCACGAAAAAGGCGACAAAAGGCGG
GAAACCCAGCGATGATTTTGGCCCTGccaagaaaagaggaatcTACGTAC
CccgaaaggaaggcagagcATGCttgaagaggggaaagaaaggagCGGAA
GGGTTTCTAGCAAATGAGGTCACTACACCAAAAGCAATTGCATCAAAGAC
ACCGCAACACGCAGGAGGGTTGATGGGGAATACAGGAGTAGGGTAA

Synonyms

Publications